Wall clock time and date at job start Mon Mar 30 2020 04:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46899 * 111.00179 * 2 1 4 4 C 1.52997 * 109.47004 * 66.04982 * 3 2 1 5 5 C 1.52993 * 109.47341 * 179.97438 * 4 3 2 6 6 N 1.46497 * 109.47517 * 179.97438 * 5 4 3 7 7 C 1.36890 * 126.40096 * 270.03397 * 6 5 4 8 8 C 1.34667 * 106.81864 * 179.97438 * 7 6 5 9 9 N 1.34130 * 108.01939 * 359.97438 * 8 7 6 10 10 C 1.30496 * 109.25586 * 0.02562 * 9 8 7 11 11 C 1.46903 * 111.00071 * 236.04658 * 2 1 3 12 12 C 1.52994 * 109.47557 * 199.82936 * 11 2 1 13 13 O 1.42894 * 109.47289 * 64.43601 * 12 11 2 14 14 C 1.42903 * 114.00494 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47441 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99839 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99638 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00395 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99444 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47032 * 90.00201 * 19 17 15 21 21 H 1.48504 * 109.46826 * 209.99750 * 19 17 15 22 22 H 1.48495 * 109.47608 * 329.99905 * 19 17 15 23 23 H 1.08998 * 109.47414 * 54.75639 * 1 2 3 24 24 H 1.09004 * 109.47497 * 174.75741 * 1 2 3 25 25 H 1.09006 * 109.47262 * 294.75474 * 1 2 3 26 26 H 1.08989 * 109.46987 * 306.04619 * 3 2 1 27 27 H 1.09000 * 109.46962 * 186.04177 * 3 2 1 28 28 H 1.09002 * 109.47359 * 59.99782 * 4 3 2 29 29 H 1.09008 * 109.47030 * 299.99859 * 4 3 2 30 30 H 1.09002 * 109.46912 * 59.99704 * 5 4 3 31 31 H 1.08996 * 109.47512 * 299.99884 * 5 4 3 32 32 H 1.07998 * 126.58729 * 359.97438 * 7 6 5 33 33 H 1.08004 * 125.98659 * 180.26599 * 8 7 6 34 34 H 1.08004 * 125.64694 * 180.02562 * 10 9 8 35 35 H 1.09000 * 109.47131 * 319.82902 * 11 2 1 36 36 H 1.09001 * 109.46771 * 79.82526 * 11 2 1 37 37 H 1.08997 * 109.47318 * 184.43996 * 12 11 2 38 38 H 1.09001 * 109.47260 * 304.43926 * 12 11 2 39 39 H 1.09004 * 109.46710 * 299.99961 * 14 13 12 40 40 H 1.08999 * 109.47104 * 59.99336 * 14 13 12 41 41 H 0.96994 * 119.99551 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0573 1.3183 5 6 2.1804 3.4854 1.3186 6 7 1.8314 4.1425 2.5806 7 6 0.6980 4.8675 2.8328 8 6 0.7806 5.2883 4.1093 9 7 1.9327 4.8322 4.6229 10 6 2.5674 4.1453 3.7128 11 6 1.9954 -0.7660 -1.1376 12 6 3.4450 -1.1662 -0.8560 13 8 3.4852 -2.0539 0.2630 14 6 4.8005 -2.4901 0.6121 15 6 4.7243 -3.4171 1.7978 16 1 3.7672 -3.6495 2.2409 17 6 5.8767 -3.9675 2.3177 18 7 7.0422 -3.6840 1.7784 19 14 5.7822 -5.1159 3.7879 20 1 5.6240 -6.5145 3.3143 21 1 7.0293 -5.0018 4.5861 22 1 4.6185 -4.7446 4.6323 23 1 -0.3634 0.5930 -0.8393 24 1 -0.3634 -1.0234 -0.0939 25 1 -0.3634 0.4303 0.9333 26 1 1.5611 1.9272 -0.8308 27 1 3.0797 1.3443 -0.1082 28 1 2.0659 1.5014 2.1492 29 1 0.5472 2.0844 1.4266 30 1 1.7464 4.0416 0.4877 31 1 3.2646 3.4581 1.2106 32 1 -0.1076 5.0642 2.1409 33 1 0.0455 5.8843 4.6299 34 1 3.5228 3.6589 3.8438 35 1 1.3925 -1.6625 -1.2822 36 1 1.9561 -0.1527 -2.0379 37 1 3.8606 -1.6656 -1.7311 38 1 4.0314 -0.2747 -0.6337 39 1 5.2446 -3.0170 -0.2325 40 1 5.4148 -1.6259 0.8648 41 1 7.8528 -4.0710 2.1444 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293738001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:24 Heat of formation + Delta-G solvation = -5.489922 kcal Electronic energy + Delta-G solvation = -19900.981736 eV Core-core repulsion = 16816.332747 eV Total energy + Delta-G solvation = -3084.648989 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.90406 -39.40456 -37.94725 -35.84280 -34.87364 -32.34285 -30.83303 -30.26981 -28.92540 -27.44082 -25.32802 -24.42313 -23.15523 -22.23748 -21.67712 -21.55209 -18.62755 -18.30996 -17.40581 -17.19349 -16.50819 -16.39482 -16.14633 -15.79336 -15.43217 -15.29247 -14.82832 -14.77541 -14.55103 -14.08918 -13.65889 -13.55209 -13.30927 -13.13288 -12.96279 -12.79157 -12.70819 -12.60173 -12.26641 -12.17087 -11.86313 -11.52742 -11.22476 -10.93090 -10.84179 -10.56166 -10.15259 -9.42377 -9.13519 -8.31427 -6.42917 1.16168 1.39702 1.42213 1.54439 1.92177 2.24095 2.35360 2.96027 3.02374 3.28595 3.73315 3.89462 3.90835 4.01747 4.16038 4.19326 4.27816 4.32907 4.43714 4.48397 4.60277 4.60723 4.65133 4.69395 4.70937 4.80431 4.84521 4.97860 5.01464 5.05469 5.21037 5.22118 5.40258 5.56448 5.86606 5.98944 6.14403 6.21926 6.30288 6.59046 6.89139 7.16499 7.29648 8.80824 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.014807 B = 0.003952 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.518832 B = 7084.094454 C = 8362.807482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.564 5.564 3 C 0.061 3.939 4 C -0.120 4.120 5 C 0.109 3.891 6 N -0.455 5.455 7 C -0.048 4.048 8 C -0.063 4.063 9 N -0.541 5.541 10 C 0.167 3.833 11 C 0.070 3.930 12 C 0.057 3.943 13 O -0.397 6.397 14 C 0.211 3.789 15 C -0.546 4.546 16 H 0.058 0.942 17 C 0.008 3.992 18 N -0.930 5.930 19 Si 0.980 3.020 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.267 1.267 23 H 0.043 0.957 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.120 0.880 31 H 0.104 0.896 32 H 0.206 0.794 33 H 0.182 0.818 34 H 0.215 0.785 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.045 0.955 38 H 0.039 0.961 39 H -0.017 1.017 40 H -0.017 1.017 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.471 16.216 -6.445 22.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.288 5.288 3 C -0.067 4.067 4 C -0.159 4.159 5 C -0.013 4.013 6 N -0.137 5.137 7 C -0.181 4.181 8 C -0.210 4.210 9 N -0.260 5.260 10 C -0.116 4.116 11 C -0.057 4.057 12 C -0.021 4.021 13 O -0.316 6.316 14 C 0.136 3.864 15 C -0.583 4.583 16 H 0.076 0.924 17 C -0.191 4.191 18 N -0.570 5.570 19 Si 0.803 3.197 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.191 1.191 23 H 0.062 0.938 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.138 0.862 31 H 0.122 0.878 32 H 0.222 0.778 33 H 0.199 0.801 34 H 0.231 0.769 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.001 0.999 40 H 0.000 1.000 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.984 15.965 -5.255 21.239 hybrid contribution 0.161 -0.409 -0.883 0.986 sum -12.823 15.556 -6.138 21.073 Atomic orbital electron populations 1.22386 0.86141 1.01937 1.01297 1.61682 1.08839 1.14039 1.44262 1.22043 1.00427 0.87697 0.96535 1.21803 1.01780 0.94053 0.98261 1.22023 1.03161 0.92695 0.83447 1.45771 1.16749 1.38615 1.12521 1.23236 0.93288 1.01685 0.99898 1.22724 0.97438 1.06754 0.94092 1.70245 1.08558 1.15186 1.32026 1.25357 1.00730 1.03065 0.82399 1.22060 0.93757 0.98119 0.91789 1.22622 0.97792 0.92676 0.88966 1.87895 1.29662 1.64650 1.49429 1.19755 0.80143 0.92520 0.94004 1.21382 0.93935 1.28304 1.14704 0.92378 1.25912 0.94253 0.98252 1.00638 1.70061 0.98637 1.45365 1.42918 0.85237 0.78015 0.78541 0.77957 1.19186 1.19855 1.19149 0.93838 0.92045 0.91404 0.92080 0.91338 0.93237 0.90885 0.86171 0.87774 0.77765 0.80134 0.76871 0.90583 0.90516 0.93719 0.94304 0.99931 0.99960 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 9.23 127.69 1.18 1.79 16 2 N -0.56 -14.78 4.63 -922.49 -4.27 -19.06 16 3 C 0.06 1.20 4.78 86.30 0.41 1.62 16 4 C -0.12 -2.24 5.46 30.59 0.17 -2.07 16 5 C 0.11 1.48 6.15 86.38 0.53 2.01 16 6 N -0.45 -8.60 2.75 -529.09 -1.46 -10.06 16 7 C -0.05 -0.83 11.58 83.08 0.96 0.13 16 8 C -0.06 -1.41 11.87 83.52 0.99 -0.42 16 9 N -0.54 -15.26 11.25 -200.31 -2.25 -17.52 16 10 C 0.17 3.99 12.56 180.26 2.26 6.25 16 11 C 0.07 1.87 5.39 86.30 0.47 2.34 16 12 C 0.06 2.03 6.13 71.98 0.44 2.47 16 13 O -0.40 -19.54 10.27 -148.98 -1.53 -21.07 16 14 C 0.21 12.00 5.69 71.24 0.41 12.41 16 15 C -0.55 -33.13 9.43 25.60 0.24 -32.89 16 16 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 17 C 0.01 0.46 5.46 84.65 0.46 0.92 16 18 N -0.93 -56.36 13.29 21.45 0.28 -56.08 16 19 Si 0.98 45.14 29.54 68.60 2.03 47.17 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 H 0.04 0.68 8.07 -2.39 -0.02 0.66 16 24 H 0.06 1.33 7.85 -2.38 -0.02 1.32 16 25 H 0.07 1.35 6.73 -2.38 -0.02 1.33 16 26 H 0.06 0.85 8.07 -2.39 -0.02 0.83 16 27 H 0.07 1.50 6.58 -2.39 -0.02 1.49 16 28 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 1.30 6.67 -2.38 -0.02 1.29 16 30 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.21 1.96 8.06 -2.91 -0.02 1.94 16 33 H 0.18 3.16 8.06 -2.91 -0.02 3.13 16 34 H 0.21 4.25 8.06 -2.91 -0.02 4.23 16 35 H 0.08 2.08 7.74 -2.39 -0.02 2.06 16 36 H 0.08 1.50 8.00 -2.39 -0.02 1.48 16 37 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.04 1.34 6.68 -2.39 -0.02 1.33 16 39 H -0.02 -1.01 8.14 -2.39 -0.02 -1.02 16 40 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 41 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -76.13 342.32 2.31 -73.82 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: 0.98 Total: 8.23 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 8.52 Total: -5.44 kcal Atomic # 7 Polarization: -95.01 SS G_CDS: -7.70 Total: -102.71 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -1.53 Total: -21.07 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -76.13 2.31 -73.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293738001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.335 kcal (2) G-P(sol) polarization free energy of solvation -76.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds