Wall clock time and date at job start Mon Mar 30 2020 05:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00461 * 2 1 3 5 5 N 1.46503 * 109.47269 * 184.99793 * 4 2 1 6 6 C 1.46502 * 119.99894 * 89.99545 * 5 4 2 7 7 C 1.50699 * 109.46717 * 90.00177 * 6 5 4 8 8 H 1.08005 * 120.00223 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99915 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99790 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00126 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47062 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47355 * 120.00288 * 11 9 7 14 14 H 1.48499 * 109.46828 * 239.99952 * 11 9 7 15 15 C 1.37487 * 119.99808 * 270.00213 * 5 4 2 16 16 N 1.29258 * 118.84873 * 359.72555 * 15 5 4 17 17 C 1.45836 * 123.75313 * 180.73308 * 16 15 5 18 18 C 1.53035 * 110.65741 * 339.68491 * 17 16 15 19 19 C 1.53002 * 109.63898 * 289.53092 * 18 17 16 20 20 C 1.53003 * 109.81522 * 169.00528 * 18 17 16 21 21 C 1.53609 * 108.44375 * 49.21750 * 18 17 16 22 22 N 1.37475 * 118.84511 * 179.97438 * 15 5 4 23 23 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 24 24 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 26 26 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 27 27 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 28 28 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 30 30 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 31 31 H 1.09001 * 109.47630 * 64.99767 * 4 2 1 32 32 H 1.08996 * 109.47218 * 210.00236 * 6 5 4 33 33 H 1.08995 * 109.47207 * 330.00600 * 6 5 4 34 34 H 0.97002 * 119.99725 * 180.02562 * 10 9 7 35 35 H 1.08995 * 109.37548 * 219.27672 * 17 16 15 36 36 H 1.08996 * 109.03706 * 99.86919 * 17 16 15 37 37 H 1.09001 * 109.46721 * 178.94842 * 19 18 17 38 38 H 1.09000 * 109.46832 * 298.95003 * 19 18 17 39 39 H 1.09004 * 109.47225 * 58.94859 * 19 18 17 40 40 H 1.09001 * 109.47132 * 300.94339 * 20 18 17 41 41 H 1.09003 * 109.46583 * 60.94394 * 20 18 17 42 42 H 1.09000 * 109.46668 * 180.94208 * 20 18 17 43 43 H 1.09000 * 109.87543 * 181.12564 * 21 18 17 44 44 H 1.09001 * 109.93757 * 60.09444 * 21 18 17 45 45 H 0.97002 * 120.64878 * 347.05553 * 22 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 3.5001 -0.8262 -1.1907 6 6 4.1259 -1.9918 -0.5613 7 6 4.3422 -3.0658 -1.5962 8 1 4.0437 -2.8968 -2.6203 9 6 4.9220 -4.2636 -1.2358 10 7 5.2859 -4.4692 0.0112 11 14 5.1907 -5.5946 -2.5186 12 1 4.6977 -5.1190 -3.8362 13 1 6.6398 -5.9047 -2.6142 14 1 4.4475 -6.8186 -2.1251 15 6 4.2830 0.1690 -1.7262 16 7 3.7075 1.1849 -2.2808 17 6 4.4323 2.2915 -2.8946 18 6 5.8690 2.3523 -2.3711 19 6 5.8654 2.8097 -0.9110 20 6 6.6875 3.3317 -3.2148 21 6 6.4824 0.9475 -2.4706 22 7 5.6506 0.0464 -1.6576 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6055 -1.7197 -1.2953 31 1 1.7517 -0.1582 -2.1370 32 1 5.0852 -1.7020 -0.1325 33 1 3.4758 -2.3721 0.2266 34 1 5.6941 -5.3118 0.2647 35 1 3.9255 3.2283 -2.6633 36 1 4.4494 2.1494 -3.9752 37 1 6.8883 2.8340 -0.5354 38 1 5.4297 3.8065 -0.8437 39 1 5.2755 2.1142 -0.3139 40 1 6.6821 3.0074 -4.2554 41 1 6.2499 4.3274 -3.1422 42 1 7.7135 3.3581 -2.8477 43 1 7.5016 0.9599 -2.0843 44 1 6.4838 0.6152 -3.5087 45 1 6.0591 -0.6211 -1.0845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302488088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:58 Heat of formation + Delta-G solvation = 18.522116 kcal Electronic energy + Delta-G solvation = -22170.665149 eV Core-core repulsion = 19222.890494 eV Total energy + Delta-G solvation = -2947.774655 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.46792 -37.08746 -34.55428 -33.14659 -32.00438 -31.59563 -27.57704 -27.15300 -26.62010 -26.43916 -24.72207 -24.23511 -22.18897 -20.17885 -19.14209 -17.21060 -17.05471 -16.39292 -15.67480 -14.63887 -14.60914 -14.39689 -14.12520 -13.81552 -13.64084 -13.25636 -13.03400 -12.45824 -12.22005 -12.07195 -12.03553 -11.71451 -11.64786 -11.59654 -11.31698 -11.17255 -11.09951 -10.88435 -10.72303 -10.58477 -10.52366 -10.33705 -10.17644 -9.94370 -9.88334 -9.49081 -8.54348 -8.08312 -7.61086 -6.70839 -6.08863 -4.19164 3.23417 3.32053 3.37012 3.65202 3.91585 4.35305 4.61936 4.93818 5.06271 5.17890 5.19956 5.49101 5.53632 5.60560 5.61086 5.65822 5.74325 5.88268 5.98597 6.01629 6.07456 6.08271 6.13756 6.20046 6.27678 6.34740 6.38218 6.41493 6.50406 6.55558 6.60417 6.64525 6.66728 6.97296 7.05890 7.10715 7.23808 7.36596 7.75775 7.90235 8.15548 8.23468 8.85328 9.01921 9.45473 9.63718 10.93086 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.014406 B = 0.007419 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.162118 B = 3773.048678 C = 5158.975446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.112 4.112 3 C -0.123 4.123 4 C 0.154 3.846 5 N -0.600 5.600 6 C 0.255 3.745 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.895 3.105 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.653 3.347 16 N -0.700 5.700 17 C 0.113 3.887 18 C -0.118 4.118 19 C -0.126 4.126 20 C -0.134 4.134 21 C 0.145 3.855 22 N -0.767 5.767 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.026 0.974 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.024 0.976 33 H 0.034 0.966 34 H 0.263 0.737 35 H 0.059 0.941 36 H 0.039 0.961 37 H 0.045 0.955 38 H 0.048 0.952 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.071 0.929 44 H 0.051 0.949 45 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.584 11.972 -1.698 12.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.132 4.132 3 C -0.180 4.180 4 C 0.029 3.971 5 N -0.319 5.319 6 C 0.135 3.865 7 C -0.567 4.567 8 H 0.079 0.921 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.723 3.277 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.292 3.708 16 N -0.445 5.445 17 C -0.019 4.019 18 C -0.121 4.121 19 C -0.184 4.184 20 C -0.192 4.192 21 C 0.018 3.982 22 N -0.414 5.414 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.042 0.958 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -1.289 12.148 -1.807 12.349 hybrid contribution 1.415 -1.223 -0.378 1.908 sum 0.126 10.925 -2.185 11.142 Atomic orbital electron populations 1.21745 0.95869 1.01158 1.01058 1.21547 0.94682 0.97393 0.99615 1.21698 1.01571 0.95078 0.99662 1.21120 0.79587 0.99287 0.97059 1.46391 1.04285 1.19413 1.61781 1.19128 0.93003 0.81449 0.92967 1.21641 1.39929 0.99144 0.95956 0.92148 1.24955 0.95416 0.98319 0.95371 1.69939 1.41771 1.25276 1.16463 0.86487 0.77777 0.81653 0.81805 1.19786 1.21040 1.20941 1.18325 0.78887 0.86743 0.86840 1.71051 1.33588 1.06047 1.33817 1.21318 0.88963 0.95011 0.96580 1.21523 0.98791 0.95093 0.96672 1.21679 1.00874 1.00619 0.95195 1.21746 0.99306 0.98794 0.99385 1.21446 0.93554 0.88268 0.94889 1.45260 1.04145 1.41060 1.50893 0.92892 0.93033 0.93412 0.92015 0.95509 0.92497 0.92248 0.91744 0.90548 0.95820 0.94796 0.92753 0.92271 0.94289 0.93579 0.93286 0.92129 0.92778 0.92615 0.92979 0.91061 0.93075 0.75949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.19 37.16 0.34 -1.59 16 2 C -0.11 -1.86 3.13 -90.62 -0.28 -2.14 16 3 C -0.12 -2.01 7.87 37.16 0.29 -1.72 16 4 C 0.15 2.91 4.99 -4.04 -0.02 2.89 16 5 N -0.60 -12.59 2.40 -177.10 -0.43 -13.02 16 6 C 0.26 6.11 5.05 -5.19 -0.03 6.08 16 7 C -0.53 -13.93 9.39 -34.44 -0.32 -14.26 16 8 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 9 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 10 N -0.90 -24.92 13.29 55.43 0.74 -24.18 16 11 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 C 0.65 12.99 5.82 -321.42 -1.87 11.12 16 16 N -0.70 -13.19 7.11 -62.47 -0.44 -13.64 16 17 C 0.11 1.82 5.88 -4.38 -0.03 1.79 16 18 C -0.12 -1.65 0.79 -154.17 -0.12 -1.77 16 19 C -0.13 -1.76 8.25 37.16 0.31 -1.45 16 20 C -0.13 -1.48 8.50 37.16 0.32 -1.17 16 21 C 0.14 2.21 5.98 -3.38 -0.02 2.19 16 22 N -0.77 -14.21 4.99 -61.29 -0.31 -14.52 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 1.05 5.54 -51.93 -0.29 0.76 16 29 H 0.06 1.00 7.85 -51.93 -0.41 0.59 16 30 H 0.06 1.25 8.07 -51.93 -0.42 0.83 16 31 H 0.08 1.47 7.31 -51.93 -0.38 1.09 16 32 H 0.02 0.59 6.21 -51.93 -0.32 0.27 16 33 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 34 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 36 H 0.04 0.64 8.10 -51.93 -0.42 0.22 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 1.00 6.25 -51.93 -0.32 0.68 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.40 7.91 6.61 -40.82 -0.27 7.64 16 LS Contribution 344.90 15.07 5.20 5.20 Total: -1.00 -27.08 344.90 -10.08 -37.16 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -8.29 Total: 5.49 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -1.53 Total: 1.53 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: -0.44 Total: -65.35 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.08 -10.08 -37.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302488088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.687 kcal (2) G-P(sol) polarization free energy of solvation -27.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds