Wall clock time and date at job start Mon Mar 30 2020 05:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00461 * 2 1 3 5 5 N 1.46503 * 109.47269 * 184.99793 * 4 2 1 6 6 C 1.46502 * 119.99894 * 89.99545 * 5 4 2 7 7 C 1.50699 * 109.46717 * 90.00177 * 6 5 4 8 8 H 1.08005 * 120.00223 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99915 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99790 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00126 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47062 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47355 * 120.00288 * 11 9 7 14 14 H 1.48499 * 109.46828 * 239.99952 * 11 9 7 15 15 C 1.37487 * 119.99808 * 270.00213 * 5 4 2 16 16 N 1.29258 * 118.84873 * 359.72555 * 15 5 4 17 17 C 1.45836 * 123.75313 * 180.73308 * 16 15 5 18 18 C 1.53035 * 110.65741 * 339.68491 * 17 16 15 19 19 C 1.53002 * 109.63898 * 289.53092 * 18 17 16 20 20 C 1.53003 * 109.81522 * 169.00528 * 18 17 16 21 21 C 1.53609 * 108.44375 * 49.21750 * 18 17 16 22 22 N 1.37475 * 118.84511 * 179.97438 * 15 5 4 23 23 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 24 24 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 26 26 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 27 27 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 28 28 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 30 30 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 31 31 H 1.09001 * 109.47630 * 64.99767 * 4 2 1 32 32 H 1.08996 * 109.47218 * 210.00236 * 6 5 4 33 33 H 1.08995 * 109.47207 * 330.00600 * 6 5 4 34 34 H 0.97002 * 119.99725 * 180.02562 * 10 9 7 35 35 H 1.08995 * 109.37548 * 219.27672 * 17 16 15 36 36 H 1.08996 * 109.03706 * 99.86919 * 17 16 15 37 37 H 1.09001 * 109.46721 * 178.94842 * 19 18 17 38 38 H 1.09000 * 109.46832 * 298.95003 * 19 18 17 39 39 H 1.09004 * 109.47225 * 58.94859 * 19 18 17 40 40 H 1.09001 * 109.47132 * 300.94339 * 20 18 17 41 41 H 1.09003 * 109.46583 * 60.94394 * 20 18 17 42 42 H 1.09000 * 109.46668 * 180.94208 * 20 18 17 43 43 H 1.09000 * 109.87543 * 181.12564 * 21 18 17 44 44 H 1.09001 * 109.93757 * 60.09444 * 21 18 17 45 45 H 0.97002 * 120.64878 * 347.05553 * 22 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 3.5001 -0.8262 -1.1907 6 6 4.1259 -1.9918 -0.5613 7 6 4.3422 -3.0658 -1.5962 8 1 4.0437 -2.8968 -2.6203 9 6 4.9220 -4.2636 -1.2358 10 7 5.2859 -4.4692 0.0112 11 14 5.1907 -5.5946 -2.5186 12 1 4.6977 -5.1190 -3.8362 13 1 6.6398 -5.9047 -2.6142 14 1 4.4475 -6.8186 -2.1251 15 6 4.2830 0.1690 -1.7262 16 7 3.7075 1.1849 -2.2808 17 6 4.4323 2.2915 -2.8946 18 6 5.8690 2.3523 -2.3711 19 6 5.8654 2.8097 -0.9110 20 6 6.6875 3.3317 -3.2148 21 6 6.4824 0.9475 -2.4706 22 7 5.6506 0.0464 -1.6576 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6055 -1.7197 -1.2953 31 1 1.7517 -0.1582 -2.1370 32 1 5.0852 -1.7020 -0.1325 33 1 3.4758 -2.3721 0.2266 34 1 5.6941 -5.3118 0.2647 35 1 3.9255 3.2283 -2.6633 36 1 4.4494 2.1494 -3.9752 37 1 6.8883 2.8340 -0.5354 38 1 5.4297 3.8065 -0.8437 39 1 5.2755 2.1142 -0.3139 40 1 6.6821 3.0074 -4.2554 41 1 6.2499 4.3274 -3.1422 42 1 7.7135 3.3581 -2.8477 43 1 7.5016 0.9599 -2.0843 44 1 6.4838 0.6152 -3.5087 45 1 6.0591 -0.6211 -1.0845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302488088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:57 Heat of formation + Delta-G solvation = 5.594876 kcal Electronic energy + Delta-G solvation = -22171.225716 eV Core-core repulsion = 19222.890494 eV Total energy + Delta-G solvation = -2948.335222 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.85580 -38.51964 -35.96627 -34.97937 -33.43369 -33.18767 -29.39263 -28.29570 -27.85610 -27.66688 -26.31371 -25.64753 -23.93978 -21.51312 -20.53514 -18.76018 -18.55349 -18.29215 -17.17111 -16.43054 -15.96029 -15.83620 -15.39432 -15.16817 -14.97526 -14.64238 -14.40980 -14.29787 -13.62477 -13.34154 -13.23790 -13.10915 -12.95637 -12.82712 -12.79493 -12.64507 -12.54318 -12.44142 -12.25324 -12.15107 -12.00890 -11.70641 -11.59819 -11.50461 -11.37867 -11.19014 -10.61944 -9.50200 -9.12688 -8.40428 -8.01203 -6.32875 1.36896 1.40076 1.50953 2.14082 2.40276 2.41807 3.08619 3.10616 3.76360 3.93677 4.05991 4.12553 4.23406 4.31199 4.48017 4.53775 4.60153 4.71486 4.77653 4.85460 4.86952 4.93388 4.96200 4.96680 5.03632 5.08388 5.13659 5.18197 5.22466 5.24953 5.26203 5.27715 5.33221 5.38845 5.48574 5.60875 5.68028 5.72659 5.96053 6.10266 6.21401 6.62987 6.80501 7.33965 7.46081 8.10836 8.85799 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.014406 B = 0.007419 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.162118 B = 3773.048678 C = 5158.975446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.107 4.107 3 C -0.109 4.109 4 C 0.156 3.844 5 N -0.610 5.610 6 C 0.275 3.725 7 C -0.535 4.535 8 H 0.045 0.955 9 C 0.019 3.981 10 N -0.922 5.922 11 Si 0.956 3.044 12 H -0.276 1.276 13 H -0.278 1.278 14 H -0.278 1.278 15 C 0.643 3.357 16 N -0.706 5.706 17 C 0.107 3.893 18 C -0.111 4.111 19 C -0.119 4.119 20 C -0.126 4.126 21 C 0.139 3.861 22 N -0.773 5.773 23 H 0.060 0.940 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.033 0.967 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.014 0.986 33 H 0.012 0.988 34 H 0.266 0.734 35 H 0.067 0.933 36 H 0.037 0.963 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.029 0.971 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.093 0.907 44 H 0.045 0.955 45 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.283 13.128 -2.398 13.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.127 4.127 3 C -0.166 4.166 4 C 0.032 3.968 5 N -0.330 5.330 6 C 0.153 3.847 7 C -0.574 4.574 8 H 0.063 0.937 9 C -0.180 4.180 10 N -0.562 5.562 11 Si 0.782 3.218 12 H -0.201 1.201 13 H -0.203 1.203 14 H -0.203 1.203 15 C 0.281 3.719 16 N -0.451 5.451 17 C -0.024 4.024 18 C -0.113 4.113 19 C -0.177 4.177 20 C -0.185 4.185 21 C 0.014 3.986 22 N -0.418 5.418 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.032 0.968 33 H 0.030 0.970 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.048 0.952 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.111 0.889 44 H 0.063 0.937 45 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -0.992 13.349 -2.530 13.623 hybrid contribution 1.308 -1.527 -0.175 2.018 sum 0.316 11.822 -2.705 12.132 Atomic orbital electron populations 1.21684 0.93336 1.01788 1.02291 1.21471 0.96729 0.96978 0.97495 1.21540 0.99978 0.94892 1.00233 1.21159 0.78652 0.98826 0.98162 1.46304 1.05104 1.19201 1.62342 1.18662 0.92097 0.82023 0.91915 1.21752 1.39939 1.00144 0.95558 0.93717 1.25639 0.95124 1.00197 0.97076 1.70023 1.42315 1.25962 1.17907 0.85539 0.77875 0.79126 0.79257 1.20056 1.20317 1.20340 1.18387 0.79354 0.86842 0.87307 1.70986 1.34790 1.06202 1.33088 1.21419 0.90525 0.94169 0.96267 1.21463 0.97655 0.95034 0.97196 1.21604 1.01224 1.00227 0.94598 1.21683 0.99586 0.98283 0.98902 1.21686 0.94335 0.88427 0.94135 1.45407 1.04009 1.41390 1.51034 0.92064 0.92768 0.91716 0.93672 0.93835 0.94764 0.92559 0.93004 0.90850 0.96832 0.97041 0.92460 0.91458 0.94445 0.92195 0.92230 0.95198 0.92435 0.91449 0.91469 0.88894 0.93718 0.77002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.50 9.19 71.98 0.66 -2.84 16 2 C -0.11 -3.53 3.13 -10.79 -0.03 -3.57 16 3 C -0.11 -3.52 7.87 71.98 0.57 -2.95 16 4 C 0.16 6.04 4.99 86.38 0.43 6.47 16 5 N -0.61 -26.42 2.40 -714.24 -1.72 -28.13 16 6 C 0.28 13.68 5.05 85.63 0.43 14.12 16 7 C -0.53 -28.90 9.39 25.60 0.24 -28.66 16 8 H 0.04 2.52 7.81 -2.91 -0.02 2.50 16 9 C 0.02 1.04 5.46 84.65 0.46 1.50 16 10 N -0.92 -51.88 13.29 21.45 0.28 -51.59 16 11 Si 0.96 43.21 29.54 68.60 2.03 45.24 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 14 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 15 C 0.64 25.97 5.82 261.00 1.52 27.49 16 16 N -0.71 -26.56 7.11 -351.54 -2.50 -29.06 16 17 C 0.11 3.33 5.88 86.52 0.51 3.83 16 18 C -0.11 -2.90 0.79 -51.96 -0.04 -2.94 16 19 C -0.12 -3.12 8.25 71.98 0.59 -2.53 16 20 C -0.13 -2.42 8.50 71.98 0.61 -1.80 16 21 C 0.14 4.10 5.98 86.46 0.52 4.62 16 22 N -0.77 -28.96 4.99 -347.81 -1.74 -30.70 16 23 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.03 1.25 5.54 -2.39 -0.01 1.24 16 29 H 0.06 1.83 7.85 -2.39 -0.02 1.81 16 30 H 0.05 2.09 8.07 -2.39 -0.02 2.07 16 31 H 0.07 2.86 7.31 -2.39 -0.02 2.84 16 32 H 0.01 0.71 6.21 -2.39 -0.01 0.70 16 33 H 0.01 0.62 8.07 -2.39 -0.02 0.60 16 34 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 35 H 0.07 1.98 8.11 -2.39 -0.02 1.96 16 36 H 0.04 1.18 8.10 -2.39 -0.02 1.16 16 37 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.03 0.96 6.25 -2.39 -0.01 0.95 16 40 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.39 15.91 6.61 -92.71 -0.61 15.29 16 Total: -1.00 -58.10 344.90 3.15 -54.94 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: 0.33 Total: 26.56 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 6.47 Total: 12.74 kcal Atomic # 7 Polarization: -133.81 SS G_CDS: -5.67 Total: -139.48 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -58.10 3.15 -54.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302488088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.537 kcal (2) G-P(sol) polarization free energy of solvation -58.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds