Wall clock time and date at job start Mon Mar 30 2020 05:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00324 * 2 1 4 4 H 1.48502 * 109.47149 * 240.00294 * 3 2 1 5 5 H 1.48500 * 109.46715 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47058 * 120.00278 * 3 2 1 7 7 C 1.37874 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00572 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00041 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47183 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46896 * 109.47002 * 179.97438 * 11 10 9 13 13 C 1.47845 * 111.00274 * 49.16054 * 12 11 10 14 14 C 1.54902 * 104.79932 * 146.36229 * 13 12 11 15 15 C 1.55399 * 101.74334 * 323.01819 * 14 13 12 16 16 H 1.09003 * 110.67898 * 277.17870 * 15 14 13 17 17 N 1.46893 * 110.84806 * 153.86192 * 15 14 13 18 18 C 1.46955 * 111.00059 * 58.85896 * 17 15 14 19 19 C 1.53052 * 109.36855 * 183.18710 * 18 17 15 20 20 N 1.46954 * 109.36391 * 301.60288 * 19 18 17 21 21 C 1.46960 * 110.88321 * 59.31835 * 20 19 18 22 22 C 1.46958 * 111.00247 * 182.65807 * 17 15 14 23 23 C 1.47449 * 110.99975 * 169.99929 * 12 11 10 24 24 H 0.97000 * 119.99602 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46918 * 59.99468 * 9 7 2 26 26 H 1.09003 * 109.46424 * 300.00220 * 9 7 2 27 27 H 1.08996 * 109.47304 * 60.00221 * 10 9 7 28 28 H 1.08992 * 109.47209 * 299.99664 * 10 9 7 29 29 H 1.09001 * 109.46941 * 59.99616 * 11 10 9 30 30 H 1.08998 * 109.47119 * 300.00345 * 11 10 9 31 31 H 1.08998 * 110.37193 * 265.19199 * 13 12 11 32 32 H 1.09003 * 110.37113 * 27.41920 * 13 12 11 33 33 H 1.08998 * 110.99192 * 81.02230 * 14 13 12 34 34 H 1.09001 * 110.99000 * 204.79983 * 14 13 12 35 35 H 1.09000 * 109.49378 * 303.15908 * 18 17 15 36 36 H 1.09006 * 109.48659 * 63.22128 * 18 17 15 37 37 H 1.08997 * 109.49197 * 181.63200 * 19 18 17 38 38 H 1.08997 * 109.50223 * 61.57524 * 19 18 17 39 39 H 1.00900 * 111.00358 * 183.18582 * 20 19 18 40 40 H 1.09000 * 109.48856 * 180.71421 * 21 20 19 41 41 H 1.08995 * 109.50927 * 60.65278 * 21 20 19 42 42 H 1.08998 * 109.49262 * 296.78155 * 22 17 15 43 43 H 1.09001 * 109.48531 * 56.82389 * 22 17 15 44 44 H 1.09005 * 109.88731 * 356.15172 * 23 12 11 45 45 H 1.08997 * 109.88529 * 117.17453 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 7 2.4348 -6.1036 -0.0005 13 6 3.4659 -5.9198 1.0429 14 6 3.7992 -7.3531 1.5267 15 6 2.4047 -8.0368 1.4747 16 1 1.8335 -7.8152 2.3763 17 7 2.5403 -9.4874 1.2875 18 6 3.3241 -10.0879 2.3759 19 6 3.5096 -11.5824 2.1031 20 7 2.1924 -12.2243 1.9903 21 6 1.4086 -11.6238 0.9019 22 6 1.2231 -10.1293 1.1748 23 6 1.7479 -7.3862 0.2391 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5570 0.8897 27 1 2.8719 -3.6044 0.8894 28 1 2.8718 -3.6044 -0.8905 29 1 0.8532 -5.0450 -0.8896 30 1 0.8538 -5.0445 0.8903 31 1 4.3522 -5.4459 0.6212 32 1 3.0717 -5.3221 1.8648 33 1 4.4971 -7.8422 0.8470 34 1 4.1917 -7.3406 2.5435 35 1 4.2995 -9.6046 2.4312 36 1 2.7972 -9.9533 3.3206 37 1 4.0659 -12.0356 2.9236 38 1 4.0604 -11.7168 1.1722 39 1 2.2855 -13.2207 1.8618 40 1 0.4331 -12.1072 0.8467 41 1 1.9351 -11.7583 -0.0429 42 1 0.6723 -9.9953 2.1058 43 1 0.6666 -9.6758 0.3546 44 1 0.6895 -7.2097 0.4314 45 1 1.8637 -8.0364 -0.6279 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306104666.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:06 Heat of formation + Delta-G solvation = -18.505017 kcal Electronic energy + Delta-G solvation = -20676.135804 eV Core-core repulsion = 17726.755532 eV Total energy + Delta-G solvation = -2949.380272 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.84583 -39.13241 -36.33046 -35.14265 -33.54704 -32.08454 -31.14488 -29.59628 -27.91621 -25.86599 -24.93599 -24.19797 -22.56403 -21.47177 -20.99255 -20.71718 -18.51943 -18.12519 -16.94279 -16.71549 -16.44724 -16.06688 -15.81073 -15.54977 -15.42814 -14.89864 -14.69580 -14.44258 -14.20056 -14.02751 -13.50119 -13.36921 -13.23968 -13.04828 -12.65030 -12.50560 -12.46472 -12.28235 -12.18386 -12.04872 -11.85558 -11.66209 -11.58523 -11.51504 -11.35054 -11.09131 -10.55760 -9.58313 -9.34408 -9.22668 -8.20888 -6.32296 1.39382 1.42892 1.50823 2.40385 2.71928 3.07739 3.12082 3.28086 3.45869 3.78121 3.94124 4.05363 4.14541 4.19744 4.24048 4.34054 4.35841 4.37258 4.39978 4.49764 4.59760 4.61340 4.67831 4.83688 4.86212 4.90184 4.91870 4.95311 4.96071 5.04037 5.07226 5.12484 5.19941 5.21022 5.50051 5.72106 5.83787 5.88997 6.00856 6.04873 6.06907 6.11750 6.26167 6.47454 6.84176 7.36971 8.91009 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.053630 B = 0.002912 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.972933 B = 9614.049859 C = 9935.227046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.027 3.973 10 C -0.093 4.093 11 C 0.063 3.937 12 N -0.534 5.534 13 C 0.040 3.960 14 C -0.108 4.108 15 C 0.069 3.931 16 H 0.039 0.961 17 N -0.530 5.530 18 C 0.053 3.947 19 C 0.062 3.938 20 N -0.701 5.701 21 C 0.064 3.936 22 C 0.051 3.949 23 C 0.054 3.946 24 H 0.264 0.736 25 H -0.009 1.009 26 H -0.011 1.011 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.024 0.976 31 H 0.081 0.919 32 H 0.040 0.960 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.030 0.970 37 H 0.094 0.906 38 H 0.038 0.962 39 H 0.355 0.645 40 H 0.091 0.909 41 H 0.038 0.962 42 H 0.029 0.971 43 H 0.081 0.919 44 H 0.047 0.953 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.736 -25.243 4.493 26.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.011 4.011 10 C -0.131 4.131 11 C -0.065 4.065 12 N -0.258 5.258 13 C -0.088 4.088 14 C -0.146 4.146 15 C -0.040 4.040 16 H 0.057 0.943 17 N -0.255 5.255 18 C -0.075 4.075 19 C -0.067 4.067 20 N -0.334 5.334 21 C -0.066 4.066 22 C -0.077 4.077 23 C -0.074 4.074 24 H 0.073 0.927 25 H 0.010 0.990 26 H 0.007 0.993 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.042 0.958 31 H 0.099 0.901 32 H 0.058 0.942 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.048 0.952 37 H 0.112 0.888 38 H 0.056 0.944 39 H 0.174 0.826 40 H 0.110 0.890 41 H 0.056 0.944 42 H 0.048 0.952 43 H 0.099 0.901 44 H 0.066 0.934 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.778 -24.838 4.044 26.062 hybrid contribution -0.572 1.010 0.698 1.354 sum 6.206 -23.829 4.743 25.076 Atomic orbital electron populations 1.70095 1.07848 1.27878 1.51647 1.26010 0.95798 1.03454 0.94664 0.85484 0.78276 0.77947 0.79255 1.19111 1.20750 1.19085 1.21660 0.93539 0.92351 1.50639 0.92199 1.18959 0.94368 0.93119 0.94659 1.21472 0.98078 0.92732 1.00804 1.22230 0.93966 0.90550 0.99764 1.63689 1.13377 1.01724 1.47037 1.23046 0.95687 0.97275 0.92747 1.22753 0.96045 0.93590 1.02191 1.22801 0.97096 0.87914 0.96239 0.94303 1.62252 1.16600 1.01906 1.44729 1.22238 0.98512 0.95073 0.91637 1.21989 0.90227 0.93312 1.01215 1.60503 1.17044 1.09008 1.46823 1.21954 0.98881 0.93410 0.92358 1.22228 0.89956 0.94943 1.00557 1.22825 0.96123 0.90528 0.97912 0.92731 0.99047 0.99263 0.92784 0.92900 0.91556 0.95775 0.90081 0.94185 0.89467 0.89554 0.89289 0.95189 0.88792 0.94379 0.82617 0.89026 0.94359 0.95231 0.90089 0.93404 0.89638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.97 13.29 21.45 0.28 -57.69 16 2 C 0.00 -0.10 5.46 84.65 0.46 0.37 16 3 Si 0.97 44.92 29.54 68.60 2.03 46.95 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 7 C -0.54 -31.79 9.11 25.60 0.23 -31.56 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.03 1.45 4.97 29.85 0.15 1.60 16 10 C -0.09 -4.01 4.82 30.59 0.15 -3.86 16 11 C 0.06 2.30 4.82 86.30 0.42 2.72 16 12 N -0.53 -16.59 5.31 -885.54 -4.71 -21.30 16 13 C 0.04 1.12 5.31 86.77 0.46 1.58 16 14 C -0.11 -2.31 5.31 32.07 0.17 -2.14 16 15 C 0.07 1.56 2.65 46.19 0.12 1.68 16 16 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 17 N -0.53 -10.49 4.53 -863.06 -3.91 -14.40 16 18 C 0.05 0.90 5.41 86.31 0.47 1.37 16 19 C 0.06 0.85 6.72 86.31 0.58 1.43 16 20 N -0.70 -9.81 6.90 -513.44 -3.54 -13.35 16 21 C 0.06 0.94 6.72 86.31 0.58 1.52 16 22 C 0.05 0.95 5.44 86.31 0.47 1.42 16 23 C 0.05 1.42 5.43 86.64 0.47 1.89 16 24 H 0.26 15.36 8.31 -92.71 -0.77 14.58 16 25 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 26 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 27 H 0.05 2.25 6.47 -2.39 -0.02 2.24 16 28 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.02 0.90 7.96 -2.39 -0.02 0.88 16 31 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.04 1.19 7.02 -2.39 -0.02 1.18 16 33 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.09 1.56 8.03 -2.39 -0.02 1.54 16 35 H 0.09 1.35 6.93 -2.39 -0.02 1.34 16 36 H 0.03 0.57 8.14 -2.38 -0.02 0.55 16 37 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.35 3.51 8.90 -89.69 -0.80 2.71 16 40 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.08 1.48 7.04 -2.39 -0.02 1.47 16 44 H 0.05 1.27 7.49 -2.38 -0.02 1.25 16 45 H 0.09 2.21 7.81 -2.39 -0.02 2.19 16 Total: -1.00 -65.66 342.61 -4.99 -70.64 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.14 Total: 11.15 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: 4.73 Total: -21.99 kcal Atomic # 7 Polarization: -94.87 SS G_CDS: -11.88 Total: -106.74 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -65.66 -4.99 -70.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306104666.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.137 kcal (2) G-P(sol) polarization free energy of solvation -65.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds