Wall clock time and date at job start Mon Mar 30 2020 05:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47007 * 2 1 4 4 H 1.08996 * 109.46625 * 179.66610 * 3 2 1 5 5 C 1.50698 * 109.47020 * 59.66583 * 3 2 1 6 6 H 1.08002 * 119.99468 * 239.99985 * 5 3 2 7 7 C 1.37873 * 120.00140 * 59.99838 * 5 3 2 8 8 N 1.31515 * 120.00145 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00021 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46996 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47100 * 120.00078 * 9 7 5 12 12 H 1.48503 * 109.46911 * 240.00066 * 9 7 5 13 13 N 1.46902 * 109.47104 * 299.66575 * 3 2 1 14 14 C 1.48541 * 110.99693 * 301.01700 * 13 3 2 15 15 C 1.54935 * 103.22290 * 200.28134 * 14 13 3 16 16 C 1.54589 * 102.92620 * 37.41479 * 15 14 13 17 17 H 1.09001 * 110.39132 * 96.99769 * 16 15 14 18 18 N 1.46898 * 110.31514 * 219.12531 * 16 15 14 19 19 C 1.46957 * 110.99654 * 296.40636 * 18 16 15 20 20 C 1.53057 * 109.38047 * 176.79588 * 19 18 16 21 21 N 1.47009 * 109.33676 * 58.39093 * 20 19 18 22 22 C 1.46952 * 110.89148 * 300.69108 * 21 20 19 23 23 C 1.46954 * 111.00403 * 172.60694 * 18 16 15 24 24 C 1.47899 * 110.99818 * 183.62684 * 13 3 2 25 25 H 1.08994 * 109.47248 * 294.78995 * 1 2 3 26 26 H 1.09000 * 109.47191 * 54.79090 * 1 2 3 27 27 H 1.09000 * 109.47057 * 174.78850 * 1 2 3 28 28 H 1.08997 * 109.46967 * 240.00093 * 2 1 3 29 29 H 1.08997 * 109.47359 * 119.99947 * 2 1 3 30 30 H 0.96998 * 120.00166 * 179.97438 * 8 7 5 31 31 H 1.08995 * 110.67228 * 318.71508 * 14 13 3 32 32 H 1.08997 * 110.66431 * 81.84811 * 14 13 3 33 33 H 1.09007 * 110.72247 * 279.05826 * 15 14 13 34 34 H 1.09002 * 110.72152 * 155.77671 * 15 14 13 35 35 H 1.08999 * 109.48822 * 296.77328 * 19 18 16 36 36 H 1.09002 * 109.48963 * 56.82241 * 19 18 16 37 37 H 1.08996 * 109.48679 * 178.37822 * 20 19 18 38 38 H 1.08993 * 109.49182 * 298.44750 * 20 19 18 39 39 H 1.00897 * 110.99408 * 64.56451 * 21 20 19 40 40 H 1.08998 * 109.49229 * 299.35224 * 22 21 20 41 41 H 1.09007 * 109.50582 * 179.29927 * 22 21 20 42 42 H 1.09005 * 109.48631 * 303.15336 * 23 18 16 43 43 H 1.08992 * 109.49131 * 63.19799 * 23 18 16 44 44 H 1.09001 * 109.92028 * 26.48770 * 24 13 3 45 45 H 1.08998 * 110.07865 * 265.28432 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0060 5 6 1.5309 2.1553 1.2263 6 1 0.9105 3.0332 1.1220 7 6 1.8570 1.6867 2.4812 8 7 2.6120 0.6174 2.6082 9 14 1.2253 2.5698 4.0013 10 1 0.4027 3.7358 3.5903 11 1 0.3962 1.6376 4.8066 12 1 2.3756 3.0385 4.8153 13 7 1.5569 2.1327 -1.2035 14 6 2.0198 1.4426 -2.4347 15 6 1.8939 2.5378 -3.5234 16 6 2.3178 3.8213 -2.7734 17 1 3.3676 4.0438 -2.9646 18 7 1.4751 4.9529 -3.1824 19 6 1.6576 5.2570 -4.6085 20 6 0.7065 6.3859 -5.0129 21 7 0.9773 7.5704 -4.1854 22 6 0.7947 7.2663 -2.7593 23 6 1.7458 6.1372 -2.3555 24 6 2.1016 3.5055 -1.2818 25 1 -0.3633 0.4309 0.9329 26 1 -0.3633 0.5925 -0.8396 27 1 -0.3633 -1.0234 -0.0933 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.8418 0.2879 3.4911 31 1 3.0563 1.1221 -2.3296 32 1 1.3753 0.5946 -2.6658 33 1 0.8645 2.6175 -3.8731 34 1 2.5700 2.3353 -4.3541 35 1 2.6872 5.5681 -4.7851 36 1 1.4396 4.3682 -5.2007 37 1 0.8607 6.6325 -6.0634 38 1 -0.3241 6.0648 -4.8619 39 1 1.9027 7.9313 -4.3626 40 1 -0.2349 6.9552 -2.5827 41 1 1.0129 8.1549 -2.1668 42 1 1.5917 5.8902 -1.3050 43 1 2.7764 6.4581 -2.5062 44 1 3.0512 3.5592 -0.7493 45 1 1.3940 4.2139 -0.8511 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310283700.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:08 Heat of formation + Delta-G solvation = 17.266067 kcal Electronic energy + Delta-G solvation = -21911.302061 eV Core-core repulsion = 18963.472940 eV Total energy + Delta-G solvation = -2947.829121 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.65896 -37.80089 -34.89182 -33.00272 -31.19151 -31.11174 -29.33345 -27.69750 -26.00442 -24.70266 -23.44636 -23.05290 -20.98153 -20.70420 -19.61355 -18.84754 -16.79783 -16.03125 -15.49030 -15.19451 -14.84436 -14.54723 -14.44760 -14.08180 -13.94009 -13.30906 -13.20507 -12.61430 -12.38769 -12.33350 -11.82927 -11.70832 -11.48435 -11.32221 -11.27400 -11.12378 -10.96139 -10.84863 -10.57380 -10.47276 -10.43130 -10.24943 -9.88703 -9.63681 -9.36068 -8.80708 -8.58838 -8.39544 -8.17076 -7.19462 -5.98810 -4.01826 3.29947 3.38392 3.42886 3.85215 4.20797 4.42696 4.86020 4.93410 5.01889 5.11802 5.14126 5.23574 5.30495 5.34653 5.39122 5.51930 5.61591 5.64581 5.76319 5.88065 5.95197 5.99636 6.12505 6.18469 6.32213 6.40280 6.44953 6.56528 6.63630 6.67237 6.81324 6.82016 7.13280 7.18023 7.20725 7.26007 7.32785 7.42676 7.64711 7.74907 7.86654 8.15135 8.36169 8.58543 9.04115 9.62260 11.07859 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.021798 B = 0.005498 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.232709 B = 5091.928044 C = 5979.119298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.109 4.109 3 C 0.208 3.792 4 H -0.003 1.003 5 C -0.492 4.492 6 H 0.061 0.939 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.286 1.286 13 N -0.500 5.500 14 C 0.037 3.963 15 C -0.112 4.112 16 C 0.071 3.929 17 H 0.035 0.965 18 N -0.518 5.518 19 C 0.017 3.983 20 C 0.060 3.940 21 N -0.688 5.688 22 C 0.060 3.940 23 C 0.012 3.988 24 C 0.061 3.939 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.014 0.986 28 H 0.012 0.988 29 H 0.090 0.910 30 H 0.259 0.741 31 H 0.031 0.969 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.025 0.975 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.335 0.665 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.027 0.973 44 H 0.039 0.961 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.483 8.263 -13.044 15.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.148 4.148 3 C 0.101 3.899 4 H 0.014 0.986 5 C -0.530 4.530 6 H 0.079 0.921 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.720 3.280 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.213 1.213 13 N -0.225 5.225 14 C -0.092 4.092 15 C -0.151 4.151 16 C -0.037 4.037 17 H 0.053 0.947 18 N -0.243 5.243 19 C -0.113 4.113 20 C -0.070 4.070 21 N -0.316 5.316 22 C -0.070 4.070 23 C -0.118 4.118 24 C -0.068 4.068 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.033 0.967 28 H 0.030 0.970 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.043 0.957 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.151 0.849 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.109 0.891 43 H 0.045 0.955 44 H 0.057 0.943 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.110 8.295 -12.851 15.440 hybrid contribution 2.458 -0.062 1.007 2.657 sum 0.348 8.233 -11.844 14.429 Atomic orbital electron populations 1.21458 0.97223 0.97215 1.01896 1.21525 0.95288 0.98027 0.99937 1.19481 0.92687 0.91231 0.86493 0.98596 1.21063 1.30696 1.11751 0.89540 0.92109 1.24900 0.95289 0.95115 0.98879 1.69890 1.37405 1.23048 1.23002 0.86537 0.78575 0.79789 0.83125 1.19736 1.21049 1.21284 1.64863 1.55071 1.00521 1.02055 1.23106 0.98000 0.96758 0.91333 1.22539 1.01769 0.93747 0.97008 1.22644 0.93140 0.90709 0.97230 0.94731 1.62219 1.54865 1.05147 1.02102 1.22831 0.97737 1.00283 0.90468 1.22104 1.00163 0.88030 0.96692 1.60778 1.33687 1.31010 1.06137 1.22107 1.00510 0.96229 0.88145 1.22917 0.97341 0.91568 0.99948 1.22695 0.98703 0.93614 0.91737 0.92690 0.93429 0.96705 0.96954 0.89163 0.93142 0.95101 0.90739 0.90082 0.92591 0.95653 0.90151 0.90643 0.89929 0.84875 0.89808 0.90429 0.89056 0.95515 0.94316 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 9.48 37.16 0.35 -2.35 16 2 C -0.11 -2.63 5.19 -26.73 -0.14 -2.77 16 3 C 0.21 5.16 1.45 -68.86 -0.10 5.06 16 4 H 0.00 -0.10 7.98 -51.93 -0.41 -0.51 16 5 C -0.49 -13.21 6.96 -34.44 -0.24 -13.45 16 6 H 0.06 1.67 7.48 -52.49 -0.39 1.27 16 7 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 8 N -0.89 -25.26 11.32 55.43 0.63 -24.63 16 9 Si 0.89 21.29 29.54 -169.99 -5.02 16.26 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.50 -10.66 4.26 -223.88 -0.95 -11.62 16 14 C 0.04 0.67 5.37 -1.89 -0.01 0.66 16 15 C -0.11 -1.70 5.53 -24.88 -0.14 -1.84 16 16 C 0.07 1.12 2.72 -66.36 -0.18 0.94 16 17 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 18 N -0.52 -7.26 4.51 -224.87 -1.01 -8.27 16 19 C 0.02 0.19 5.44 -3.76 -0.02 0.17 16 20 C 0.06 0.62 6.73 -3.73 -0.03 0.59 16 21 N -0.69 -7.23 6.91 -113.60 -0.79 -8.02 16 22 C 0.06 0.68 6.72 -3.77 -0.03 0.65 16 23 C 0.01 0.15 5.30 -3.77 -0.02 0.13 16 24 C 0.06 1.19 5.01 -2.75 -0.01 1.17 16 25 H 0.05 1.33 7.40 -51.93 -0.38 0.95 16 26 H 0.05 1.03 7.46 -51.93 -0.39 0.65 16 27 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.01 0.26 6.89 -51.93 -0.36 -0.09 16 29 H 0.09 2.42 6.08 -51.93 -0.32 2.10 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 31 H 0.03 0.58 8.01 -51.93 -0.42 0.16 16 32 H 0.07 1.33 7.65 -51.93 -0.40 0.93 16 33 H 0.08 1.24 7.91 -51.93 -0.41 0.83 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.90 7.04 -51.93 -0.37 0.53 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.33 3.12 8.89 -39.29 -0.35 2.77 16 40 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 42 H 0.09 1.32 6.03 -51.93 -0.31 1.01 16 43 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.04 0.82 7.68 -51.93 -0.40 0.42 16 45 H 0.08 1.62 5.97 -51.93 -0.31 1.31 16 LS Contribution 333.10 15.07 5.02 5.02 Total: -1.00 -27.92 333.10 -10.93 -38.86 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -8.15 Total: 1.91 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -0.65 Total: -9.51 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: -2.13 Total: -52.54 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.92 -10.93 -38.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310283700.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.123 kcal (2) G-P(sol) polarization free energy of solvation -27.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds