Wall clock time and date at job start Mon Mar 30 2020 05:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47007 * 2 1 4 4 H 1.08996 * 109.46625 * 179.66610 * 3 2 1 5 5 C 1.50698 * 109.47020 * 59.66583 * 3 2 1 6 6 H 1.08002 * 119.99468 * 239.99985 * 5 3 2 7 7 C 1.37873 * 120.00140 * 59.99838 * 5 3 2 8 8 N 1.31515 * 120.00145 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00021 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46996 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47100 * 120.00078 * 9 7 5 12 12 H 1.48503 * 109.46911 * 240.00066 * 9 7 5 13 13 N 1.46902 * 109.47104 * 299.66575 * 3 2 1 14 14 C 1.48541 * 110.99693 * 301.01700 * 13 3 2 15 15 C 1.54935 * 103.22290 * 200.28134 * 14 13 3 16 16 C 1.54589 * 102.92620 * 37.41479 * 15 14 13 17 17 H 1.09001 * 110.39132 * 96.99769 * 16 15 14 18 18 N 1.46898 * 110.31514 * 219.12531 * 16 15 14 19 19 C 1.46957 * 110.99654 * 296.40636 * 18 16 15 20 20 C 1.53057 * 109.38047 * 176.79588 * 19 18 16 21 21 N 1.47009 * 109.33676 * 58.39093 * 20 19 18 22 22 C 1.46952 * 110.89148 * 300.69108 * 21 20 19 23 23 C 1.46954 * 111.00403 * 172.60694 * 18 16 15 24 24 C 1.47899 * 110.99818 * 183.62684 * 13 3 2 25 25 H 1.08994 * 109.47248 * 294.78995 * 1 2 3 26 26 H 1.09000 * 109.47191 * 54.79090 * 1 2 3 27 27 H 1.09000 * 109.47057 * 174.78850 * 1 2 3 28 28 H 1.08997 * 109.46967 * 240.00093 * 2 1 3 29 29 H 1.08997 * 109.47359 * 119.99947 * 2 1 3 30 30 H 0.96998 * 120.00166 * 179.97438 * 8 7 5 31 31 H 1.08995 * 110.67228 * 318.71508 * 14 13 3 32 32 H 1.08997 * 110.66431 * 81.84811 * 14 13 3 33 33 H 1.09007 * 110.72247 * 279.05826 * 15 14 13 34 34 H 1.09002 * 110.72152 * 155.77671 * 15 14 13 35 35 H 1.08999 * 109.48822 * 296.77328 * 19 18 16 36 36 H 1.09002 * 109.48963 * 56.82241 * 19 18 16 37 37 H 1.08996 * 109.48679 * 178.37822 * 20 19 18 38 38 H 1.08993 * 109.49182 * 298.44750 * 20 19 18 39 39 H 1.00897 * 110.99408 * 64.56451 * 21 20 19 40 40 H 1.08998 * 109.49229 * 299.35224 * 22 21 20 41 41 H 1.09007 * 109.50582 * 179.29927 * 22 21 20 42 42 H 1.09005 * 109.48631 * 303.15336 * 23 18 16 43 43 H 1.08992 * 109.49131 * 63.19799 * 23 18 16 44 44 H 1.09001 * 109.92028 * 26.48770 * 24 13 3 45 45 H 1.08998 * 110.07865 * 265.28432 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0060 5 6 1.5309 2.1553 1.2263 6 1 0.9105 3.0332 1.1220 7 6 1.8570 1.6867 2.4812 8 7 2.6120 0.6174 2.6082 9 14 1.2253 2.5698 4.0013 10 1 0.4027 3.7358 3.5903 11 1 0.3962 1.6376 4.8066 12 1 2.3756 3.0385 4.8153 13 7 1.5569 2.1327 -1.2035 14 6 2.0198 1.4426 -2.4347 15 6 1.8939 2.5378 -3.5234 16 6 2.3178 3.8213 -2.7734 17 1 3.3676 4.0438 -2.9646 18 7 1.4751 4.9529 -3.1824 19 6 1.6576 5.2570 -4.6085 20 6 0.7065 6.3859 -5.0129 21 7 0.9773 7.5704 -4.1854 22 6 0.7947 7.2663 -2.7593 23 6 1.7458 6.1372 -2.3555 24 6 2.1016 3.5055 -1.2818 25 1 -0.3633 0.4309 0.9329 26 1 -0.3633 0.5925 -0.8396 27 1 -0.3633 -1.0234 -0.0933 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.8418 0.2879 3.4911 31 1 3.0563 1.1221 -2.3296 32 1 1.3753 0.5946 -2.6658 33 1 0.8645 2.6175 -3.8731 34 1 2.5700 2.3353 -4.3541 35 1 2.6872 5.5681 -4.7851 36 1 1.4396 4.3682 -5.2007 37 1 0.8607 6.6325 -6.0634 38 1 -0.3241 6.0648 -4.8619 39 1 1.9027 7.9313 -4.3626 40 1 -0.2349 6.9552 -2.5827 41 1 1.0129 8.1549 -2.1668 42 1 1.5917 5.8902 -1.3050 43 1 2.7764 6.4581 -2.5062 44 1 3.0512 3.5592 -0.7493 45 1 1.3940 4.2139 -0.8511 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310283700.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:08 Heat of formation + Delta-G solvation = -2.907663 kcal Electronic energy + Delta-G solvation = -21912.176860 eV Core-core repulsion = 18963.472940 eV Total energy + Delta-G solvation = -2948.703920 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.86840 -39.17869 -36.44881 -34.50605 -33.04152 -32.11653 -30.85977 -29.08168 -27.92132 -25.95495 -24.86386 -24.42968 -22.51918 -21.72015 -20.90791 -20.66560 -18.18609 -17.81495 -17.17236 -16.37497 -16.13800 -15.80453 -15.59476 -15.37428 -15.24392 -15.01361 -14.58334 -14.25120 -13.98901 -13.58210 -13.43985 -13.30106 -12.86297 -12.80230 -12.55740 -12.48083 -12.37996 -12.29136 -12.17170 -12.10013 -11.81285 -11.71501 -11.53943 -11.51722 -11.25300 -10.81926 -10.48453 -9.52957 -9.20402 -8.96648 -8.09543 -6.19072 1.37982 1.40906 1.51831 2.41920 2.78433 3.18591 3.36601 3.42404 3.62501 3.87354 4.08911 4.16563 4.17860 4.24749 4.32533 4.41687 4.44450 4.58709 4.60567 4.64237 4.73908 4.76998 4.81039 4.83254 4.88581 4.92948 4.99632 5.06636 5.09035 5.19843 5.24418 5.25460 5.40218 5.48064 5.72240 5.74312 5.85771 5.94448 6.08097 6.16742 6.28736 6.38939 6.47445 6.67815 6.93167 7.48756 8.96282 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.021798 B = 0.005498 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.232709 B = 5091.928044 C = 5979.119298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.105 4.105 3 C 0.216 3.784 4 H -0.044 1.044 5 C -0.500 4.500 6 H 0.049 0.951 7 C 0.015 3.985 8 N -0.919 5.919 9 Si 0.950 3.050 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.283 1.283 13 N -0.509 5.509 14 C 0.033 3.967 15 C -0.097 4.097 16 C 0.082 3.918 17 H 0.038 0.962 18 N -0.529 5.529 19 C 0.019 3.981 20 C 0.064 3.936 21 N -0.688 5.688 22 C 0.068 3.932 23 C 0.014 3.986 24 C 0.065 3.935 25 H 0.030 0.970 26 H 0.053 0.947 27 H 0.039 0.961 28 H 0.029 0.971 29 H 0.060 0.940 30 H 0.260 0.740 31 H 0.023 0.977 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.031 0.969 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.344 0.656 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.069 0.931 43 H 0.030 0.970 44 H 0.011 0.989 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.146 9.166 -14.905 17.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.143 4.143 3 C 0.108 3.892 4 H -0.027 1.027 5 C -0.539 4.539 6 H 0.067 0.933 7 C -0.184 4.184 8 N -0.560 5.560 9 Si 0.776 3.224 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.209 1.209 13 N -0.233 5.233 14 C -0.095 4.095 15 C -0.135 4.135 16 C -0.027 4.027 17 H 0.056 0.944 18 N -0.255 5.255 19 C -0.111 4.111 20 C -0.066 4.066 21 N -0.317 5.317 22 C -0.062 4.062 23 C -0.116 4.116 24 C -0.064 4.064 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.049 0.951 36 H 0.107 0.893 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.162 0.838 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.087 0.913 43 H 0.049 0.951 44 H 0.029 0.971 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.776 9.212 -14.734 17.598 hybrid contribution 2.689 -0.328 1.551 3.122 sum -0.086 8.884 -13.183 15.898 Atomic orbital electron populations 1.21309 0.95711 0.98674 1.00779 1.21400 0.96488 0.97199 0.99250 1.19242 0.90131 0.92127 0.87679 1.02706 1.21214 1.30404 1.11479 0.90758 0.93254 1.25594 0.95501 0.95778 1.01502 1.70014 1.38286 1.24131 1.23553 0.85619 0.78101 0.78815 0.79829 1.19385 1.20575 1.20853 1.64768 1.55149 1.01375 1.02039 1.23196 0.97525 0.97921 0.90887 1.22466 1.02803 0.91664 0.96553 1.22436 0.93738 0.92119 0.94395 0.94424 1.62198 1.54441 1.04971 1.03841 1.22910 0.98444 1.01192 0.88515 1.22123 0.99177 0.87371 0.97886 1.60767 1.34409 1.31079 1.05409 1.22021 0.99156 0.95968 0.89070 1.22903 0.98094 0.91899 0.98697 1.22599 0.96719 0.92502 0.94542 0.95080 0.92812 0.94205 0.95284 0.92102 0.93113 0.95894 0.90084 0.89658 0.89538 0.95060 0.89343 0.88208 0.90982 0.83808 0.91098 0.89011 0.91303 0.95148 0.97072 0.91493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.76 9.48 71.98 0.68 -4.08 16 2 C -0.10 -5.11 5.19 30.60 0.16 -4.95 16 3 C 0.22 11.06 1.45 44.17 0.06 11.13 16 4 H -0.04 -2.59 7.98 -2.39 -0.02 -2.61 16 5 C -0.50 -27.69 6.96 25.60 0.18 -27.51 16 6 H 0.05 2.79 7.48 -2.91 -0.02 2.77 16 7 C 0.01 0.81 5.30 84.65 0.45 1.26 16 8 N -0.92 -53.31 11.32 21.45 0.24 -53.07 16 9 Si 0.95 44.36 29.54 68.60 2.03 46.38 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 N -0.51 -21.97 4.26 -862.23 -3.67 -25.64 16 14 C 0.03 1.17 5.37 86.65 0.47 1.64 16 15 C -0.10 -2.70 5.53 31.80 0.18 -2.52 16 16 C 0.08 2.50 2.72 45.79 0.12 2.63 16 17 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 18 N -0.53 -14.04 4.51 -865.35 -3.90 -17.94 16 19 C 0.02 0.37 5.44 86.31 0.47 0.84 16 20 C 0.06 1.13 6.73 86.30 0.58 1.71 16 21 N -0.69 -12.75 6.91 -513.31 -3.55 -16.30 16 22 C 0.07 1.44 6.72 86.31 0.58 2.02 16 23 C 0.01 0.35 5.30 86.31 0.46 0.80 16 24 C 0.07 2.59 5.01 86.45 0.43 3.03 16 25 H 0.03 1.49 7.40 -2.39 -0.02 1.47 16 26 H 0.05 2.28 7.46 -2.39 -0.02 2.27 16 27 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.03 1.28 6.89 -2.39 -0.02 1.26 16 29 H 0.06 3.34 6.08 -2.39 -0.01 3.33 16 30 H 0.26 14.35 8.31 -92.71 -0.77 13.57 16 31 H 0.02 0.85 8.01 -2.39 -0.02 0.83 16 32 H 0.08 2.76 7.65 -2.39 -0.02 2.74 16 33 H 0.08 2.36 7.91 -2.38 -0.02 2.34 16 34 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.09 1.66 7.04 -2.39 -0.02 1.64 16 37 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.34 5.43 8.89 -89.70 -0.80 4.64 16 40 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 42 H 0.07 2.04 6.03 -2.38 -0.01 2.03 16 43 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.01 0.49 7.68 -2.39 -0.02 0.47 16 45 H 0.07 2.82 5.97 -2.39 -0.01 2.80 16 Total: -1.00 -61.19 333.10 -3.88 -65.07 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.15 Total: 15.49 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 4.82 Total: -14.00 kcal Atomic # 7 Polarization: -102.07 SS G_CDS: -10.88 Total: -112.95 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -61.19 -3.88 -65.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310283700.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.166 kcal (2) G-P(sol) polarization free energy of solvation -61.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds