Wall clock time and date at job start Mon Mar 30 2020 05:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47215 * 2 1 4 4 H 1.09002 * 109.46869 * 303.20609 * 3 2 1 5 5 C 1.50701 * 109.47072 * 183.20909 * 3 2 1 6 6 H 1.07996 * 119.99882 * 240.00095 * 5 3 2 7 7 C 1.37874 * 119.99851 * 59.72124 * 5 3 2 8 8 N 1.31516 * 120.00382 * 0.27708 * 7 5 3 9 9 Si 1.86804 * 119.99762 * 180.27161 * 7 5 3 10 10 H 1.48507 * 109.46562 * 90.00599 * 9 7 5 11 11 H 1.48494 * 109.47390 * 210.00048 * 9 7 5 12 12 H 1.48494 * 109.47200 * 330.00607 * 9 7 5 13 13 N 1.46895 * 109.47110 * 63.20819 * 3 2 1 14 14 C 1.47897 * 111.00041 * 181.79740 * 13 3 2 15 15 C 1.53988 * 107.06034 * 214.15587 * 14 13 3 16 16 C 1.54597 * 105.13854 * 1.22138 * 15 14 13 17 17 H 1.09005 * 110.72648 * 263.60217 * 16 15 14 18 18 N 1.46900 * 110.72510 * 140.49568 * 16 15 14 19 19 C 1.46955 * 110.99937 * 54.75365 * 18 16 15 20 20 C 1.53056 * 109.36383 * 183.18826 * 19 18 16 21 21 N 1.46954 * 109.36353 * 301.60252 * 20 19 18 22 22 C 1.46955 * 110.88425 * 59.31955 * 21 20 19 23 23 C 1.46960 * 111.00136 * 178.55500 * 18 16 15 24 24 C 1.48524 * 111.00190 * 64.39899 * 13 3 2 25 25 H 1.09002 * 109.46519 * 294.92535 * 1 2 3 26 26 H 1.08995 * 109.47009 * 54.92814 * 1 2 3 27 27 H 1.08997 * 109.46934 * 174.93023 * 1 2 3 28 28 H 1.09002 * 109.46448 * 240.00088 * 2 1 3 29 29 H 1.09000 * 109.46978 * 120.00268 * 2 1 3 30 30 H 0.96996 * 120.00129 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.91769 * 333.51013 * 14 13 3 32 32 H 1.09004 * 109.92170 * 94.80224 * 14 13 3 33 33 H 1.09002 * 110.31149 * 120.14021 * 15 14 13 34 34 H 1.08999 * 110.30968 * 242.30939 * 15 14 13 35 35 H 1.08996 * 109.49415 * 303.15510 * 19 18 16 36 36 H 1.08999 * 109.48626 * 63.22790 * 19 18 16 37 37 H 1.08995 * 109.49110 * 181.63121 * 20 19 18 38 38 H 1.09007 * 109.50699 * 61.57779 * 20 19 18 39 39 H 1.00901 * 110.99733 * 183.18675 * 21 20 19 40 40 H 1.09002 * 109.49040 * 180.71165 * 22 21 20 41 41 H 1.09001 * 109.50777 * 60.65758 * 22 21 20 42 42 H 1.08994 * 109.48941 * 296.77849 * 23 18 16 43 43 H 1.09003 * 109.49007 * 56.84406 * 23 18 16 44 44 H 1.09002 * 110.66819 * 278.15709 * 24 13 3 45 45 H 1.09000 * 110.67014 * 41.28332 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6306 1.9726 -0.8599 5 6 3.5450 1.4432 -0.0795 6 1 4.1272 1.8959 0.7094 7 6 4.1786 0.8608 -1.1567 8 7 3.4697 0.3095 -2.1174 9 14 6.0443 0.8550 -1.2515 10 1 6.5692 -0.3703 -0.5971 11 1 6.4677 0.8761 -2.6747 12 1 6.5789 2.0544 -0.5581 13 7 1.6148 2.1122 1.2363 14 6 2.0541 3.5244 1.2522 15 6 2.3786 3.8801 2.7148 16 6 2.1267 2.5797 3.5120 17 1 1.1300 2.5847 3.9535 18 7 3.1515 2.3988 4.5489 19 6 3.2305 3.5778 5.4225 20 6 4.3604 3.3832 6.4366 21 7 4.1072 2.1663 7.2206 22 6 4.0281 0.9873 6.3469 23 6 2.8983 1.1819 5.3330 24 6 2.2398 1.4803 2.4262 25 1 -0.3632 0.4331 0.9320 26 1 -0.3633 0.5905 -0.8410 27 1 -0.3633 -1.0236 -0.0908 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.9155 -0.0999 -2.8754 31 1 2.9445 3.6432 0.6348 32 1 1.2544 4.1663 0.8826 33 1 3.4210 4.1849 2.8078 34 1 1.7189 4.6732 3.0666 35 1 3.4310 4.4639 4.8204 36 1 2.2854 3.7029 5.9509 37 1 4.4021 4.2438 7.1041 38 1 5.3096 3.2854 5.9096 39 1 4.8111 2.0421 7.9327 40 1 3.8276 0.1012 6.9492 41 1 4.9732 0.8617 5.8186 42 1 1.9494 1.2798 5.8602 43 1 2.8566 0.3212 4.6654 44 1 1.6878 0.5884 2.7227 45 1 3.2846 1.2396 2.2298 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310283702.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:12 Heat of formation + Delta-G solvation = 14.249290 kcal Electronic energy + Delta-G solvation = -22038.588260 eV Core-core repulsion = 19090.628322 eV Total energy + Delta-G solvation = -2947.959938 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.42097 -37.71081 -34.78703 -32.97174 -31.51634 -30.94647 -29.08739 -27.87607 -26.18301 -24.66134 -23.53114 -22.78986 -20.74594 -20.03921 -19.42248 -18.92609 -16.95338 -16.39450 -15.32359 -15.27519 -14.70059 -14.48118 -14.37072 -14.20221 -13.59924 -13.20718 -12.96204 -12.76229 -12.58266 -12.26190 -12.15742 -11.51956 -11.28681 -11.25163 -11.19856 -11.10148 -10.83017 -10.57483 -10.53559 -10.42107 -10.21680 -10.12706 -9.89445 -9.63746 -9.42436 -9.02366 -8.61418 -8.33877 -8.07582 -7.15221 -5.96753 -4.08772 3.28152 3.35436 3.38930 4.01114 4.13823 4.41804 4.92190 4.98303 5.17793 5.27019 5.30722 5.33050 5.39984 5.46067 5.50074 5.57426 5.67190 5.76629 5.90725 5.96558 5.99522 6.08877 6.30430 6.32492 6.37919 6.48405 6.60507 6.67712 6.71035 6.82867 6.86015 6.91859 7.08747 7.18367 7.20419 7.28792 7.32666 7.45866 7.63233 7.78158 7.99877 8.18178 8.27852 8.46914 9.01543 9.57843 11.02917 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.018253 B = 0.006060 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.638905 B = 4619.250634 C = 5210.912785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 C 0.205 3.795 4 H 0.038 0.962 5 C -0.540 4.540 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.516 5.516 14 C 0.040 3.960 15 C -0.120 4.120 16 C 0.078 3.922 17 H 0.045 0.955 18 N -0.530 5.530 19 C 0.056 3.944 20 C 0.059 3.941 21 N -0.693 5.693 22 C 0.059 3.941 23 C 0.058 3.942 24 C 0.055 3.945 25 H 0.044 0.956 26 H 0.039 0.961 27 H 0.024 0.976 28 H 0.092 0.908 29 H 0.030 0.970 30 H 0.260 0.740 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.036 0.964 37 H 0.074 0.926 38 H 0.039 0.961 39 H 0.339 0.661 40 H 0.076 0.924 41 H 0.040 0.960 42 H 0.037 0.963 43 H 0.082 0.918 44 H 0.059 0.941 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.407 3.844 14.231 14.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.148 4.148 3 C 0.098 3.902 4 H 0.056 0.944 5 C -0.578 4.578 6 H 0.078 0.922 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.240 5.240 14 C -0.089 4.089 15 C -0.158 4.158 16 C -0.031 4.031 17 H 0.063 0.937 18 N -0.255 5.255 19 C -0.073 4.073 20 C -0.071 4.071 21 N -0.324 5.324 22 C -0.071 4.071 23 C -0.071 4.071 24 C -0.074 4.074 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.043 0.957 28 H 0.110 0.890 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.057 0.943 39 H 0.157 0.843 40 H 0.094 0.906 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.101 0.899 44 H 0.078 0.922 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.201 3.749 13.817 14.367 hybrid contribution 2.144 -0.054 -0.025 2.145 sum 0.943 3.695 13.792 14.309 Atomic orbital electron populations 1.21699 0.98904 0.98308 1.00501 1.21563 0.92136 0.99152 1.01941 1.19405 0.92900 0.91139 0.86716 0.94389 1.21735 0.92624 1.37307 1.06183 0.92180 1.24901 0.97802 0.95107 0.95594 1.69876 1.34877 1.37828 1.09855 0.86694 0.86397 0.78416 0.77104 1.20756 1.21284 1.20029 1.65099 1.53810 1.01081 1.04012 1.22665 0.99699 0.91904 0.94601 1.22448 1.01084 0.96138 0.96148 1.22623 0.91651 0.97192 0.91612 0.93745 1.62198 1.47870 1.02308 1.13131 1.22137 0.97437 0.94053 0.93625 1.21998 0.97485 0.92648 0.94941 1.60535 1.53380 1.03111 1.15421 1.22008 0.98380 0.92649 0.94060 1.22123 0.96620 0.93756 0.94576 1.23020 1.00109 0.94930 0.89321 0.93654 0.94156 0.95653 0.89016 0.95081 0.92955 0.92012 0.92421 0.91263 0.92603 0.90212 0.94570 0.90719 0.94293 0.84339 0.90568 0.94160 0.94467 0.89918 0.92220 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.72 37.16 0.36 -2.46 16 2 C -0.11 -2.61 5.13 -26.73 -0.14 -2.74 16 3 C 0.21 5.05 1.80 -68.87 -0.12 4.93 16 4 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 5 C -0.54 -14.28 6.37 -34.44 -0.22 -14.50 16 6 H 0.06 1.62 6.02 -52.49 -0.32 1.30 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 8 N -0.89 -24.85 11.29 55.43 0.63 -24.23 16 9 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.52 -10.97 4.76 -223.90 -1.07 -12.03 16 14 C 0.04 0.78 6.35 -2.76 -0.02 0.77 16 15 C -0.12 -1.96 5.36 -25.38 -0.14 -2.10 16 16 C 0.08 1.29 2.75 -65.85 -0.18 1.11 16 17 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 18 N -0.53 -8.01 4.56 -224.26 -1.02 -9.04 16 19 C 0.06 0.73 5.31 -3.76 -0.02 0.71 16 20 C 0.06 0.66 6.72 -3.77 -0.03 0.64 16 21 N -0.69 -7.65 6.90 -113.64 -0.78 -8.43 16 22 C 0.06 0.69 6.72 -3.77 -0.03 0.67 16 23 C 0.06 0.80 5.49 -3.77 -0.02 0.78 16 24 C 0.05 1.08 4.06 -1.90 -0.01 1.07 16 25 H 0.04 0.90 7.85 -51.93 -0.41 0.49 16 26 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.09 2.44 5.98 -51.93 -0.31 2.13 16 29 H 0.03 0.73 6.90 -51.93 -0.36 0.37 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.06 1.35 6.42 -51.93 -0.33 1.02 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.14 7.30 -51.93 -0.38 0.77 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.00 6.48 -51.93 -0.34 0.67 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.34 3.01 8.90 -39.29 -0.35 2.66 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 1.19 7.20 -51.93 -0.37 0.81 16 44 H 0.06 1.16 7.42 -51.93 -0.39 0.78 16 45 H 0.07 1.60 5.93 -51.93 -0.31 1.29 16 LS Contribution 331.85 15.07 5.00 5.00 Total: -1.00 -27.60 331.85 -10.98 -38.58 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -8.07 Total: 3.35 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -0.65 Total: -9.38 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -2.25 Total: -53.73 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.60 -10.98 -38.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310283702.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.830 kcal (2) G-P(sol) polarization free energy of solvation -27.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds