Wall clock time and date at job start Mon Mar 30 2020 05:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47215 * 2 1 4 4 H 1.09002 * 109.46869 * 303.20609 * 3 2 1 5 5 C 1.50701 * 109.47072 * 183.20909 * 3 2 1 6 6 H 1.07996 * 119.99882 * 240.00095 * 5 3 2 7 7 C 1.37874 * 119.99851 * 59.72124 * 5 3 2 8 8 N 1.31516 * 120.00382 * 0.27708 * 7 5 3 9 9 Si 1.86804 * 119.99762 * 180.27161 * 7 5 3 10 10 H 1.48507 * 109.46562 * 90.00599 * 9 7 5 11 11 H 1.48494 * 109.47390 * 210.00048 * 9 7 5 12 12 H 1.48494 * 109.47200 * 330.00607 * 9 7 5 13 13 N 1.46895 * 109.47110 * 63.20819 * 3 2 1 14 14 C 1.47897 * 111.00041 * 181.79740 * 13 3 2 15 15 C 1.53988 * 107.06034 * 214.15587 * 14 13 3 16 16 C 1.54597 * 105.13854 * 1.22138 * 15 14 13 17 17 H 1.09005 * 110.72648 * 263.60217 * 16 15 14 18 18 N 1.46900 * 110.72510 * 140.49568 * 16 15 14 19 19 C 1.46955 * 110.99937 * 54.75365 * 18 16 15 20 20 C 1.53056 * 109.36383 * 183.18826 * 19 18 16 21 21 N 1.46954 * 109.36353 * 301.60252 * 20 19 18 22 22 C 1.46955 * 110.88425 * 59.31955 * 21 20 19 23 23 C 1.46960 * 111.00136 * 178.55500 * 18 16 15 24 24 C 1.48524 * 111.00190 * 64.39899 * 13 3 2 25 25 H 1.09002 * 109.46519 * 294.92535 * 1 2 3 26 26 H 1.08995 * 109.47009 * 54.92814 * 1 2 3 27 27 H 1.08997 * 109.46934 * 174.93023 * 1 2 3 28 28 H 1.09002 * 109.46448 * 240.00088 * 2 1 3 29 29 H 1.09000 * 109.46978 * 120.00268 * 2 1 3 30 30 H 0.96996 * 120.00129 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.91769 * 333.51013 * 14 13 3 32 32 H 1.09004 * 109.92170 * 94.80224 * 14 13 3 33 33 H 1.09002 * 110.31149 * 120.14021 * 15 14 13 34 34 H 1.08999 * 110.30968 * 242.30939 * 15 14 13 35 35 H 1.08996 * 109.49415 * 303.15510 * 19 18 16 36 36 H 1.08999 * 109.48626 * 63.22790 * 19 18 16 37 37 H 1.08995 * 109.49110 * 181.63121 * 20 19 18 38 38 H 1.09007 * 109.50699 * 61.57779 * 20 19 18 39 39 H 1.00901 * 110.99733 * 183.18675 * 21 20 19 40 40 H 1.09002 * 109.49040 * 180.71165 * 22 21 20 41 41 H 1.09001 * 109.50777 * 60.65758 * 22 21 20 42 42 H 1.08994 * 109.48941 * 296.77849 * 23 18 16 43 43 H 1.09003 * 109.49007 * 56.84406 * 23 18 16 44 44 H 1.09002 * 110.66819 * 278.15709 * 24 13 3 45 45 H 1.09000 * 110.67014 * 41.28332 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6306 1.9726 -0.8599 5 6 3.5450 1.4432 -0.0795 6 1 4.1272 1.8959 0.7094 7 6 4.1786 0.8608 -1.1567 8 7 3.4697 0.3095 -2.1174 9 14 6.0443 0.8550 -1.2515 10 1 6.5692 -0.3703 -0.5971 11 1 6.4677 0.8761 -2.6747 12 1 6.5789 2.0544 -0.5581 13 7 1.6148 2.1122 1.2363 14 6 2.0541 3.5244 1.2522 15 6 2.3786 3.8801 2.7148 16 6 2.1267 2.5797 3.5120 17 1 1.1300 2.5847 3.9535 18 7 3.1515 2.3988 4.5489 19 6 3.2305 3.5778 5.4225 20 6 4.3604 3.3832 6.4366 21 7 4.1072 2.1663 7.2206 22 6 4.0281 0.9873 6.3469 23 6 2.8983 1.1819 5.3330 24 6 2.2398 1.4803 2.4262 25 1 -0.3632 0.4331 0.9320 26 1 -0.3633 0.5905 -0.8410 27 1 -0.3633 -1.0236 -0.0908 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.9155 -0.0999 -2.8754 31 1 2.9445 3.6432 0.6348 32 1 1.2544 4.1663 0.8826 33 1 3.4210 4.1849 2.8078 34 1 1.7189 4.6732 3.0666 35 1 3.4310 4.4639 4.8204 36 1 2.2854 3.7029 5.9509 37 1 4.4021 4.2438 7.1041 38 1 5.3096 3.2854 5.9096 39 1 4.8111 2.0421 7.9327 40 1 3.8276 0.1012 6.9492 41 1 4.9732 0.8617 5.8186 42 1 1.9494 1.2798 5.8602 43 1 2.8566 0.3212 4.6654 44 1 1.6878 0.5884 2.7227 45 1 3.2846 1.2396 2.2298 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310283702.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:12 Heat of formation + Delta-G solvation = -5.917404 kcal Electronic energy + Delta-G solvation = -22039.462754 eV Core-core repulsion = 19090.628322 eV Total energy + Delta-G solvation = -2948.834432 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.73158 -39.10456 -36.29233 -34.50699 -33.39932 -31.97458 -30.64717 -29.34156 -28.03319 -25.94105 -24.93618 -24.26189 -22.35689 -21.27548 -20.81029 -20.59625 -18.38150 -18.03681 -17.01721 -16.65589 -16.11957 -15.72505 -15.39948 -15.37047 -15.12435 -14.80790 -14.58387 -14.42024 -14.07012 -13.84138 -13.31998 -13.19345 -13.02044 -12.81804 -12.56260 -12.47032 -12.32091 -12.24129 -12.15971 -11.90080 -11.71147 -11.55164 -11.52886 -11.41576 -11.27890 -10.94384 -10.42997 -9.52854 -9.21603 -8.99037 -8.03357 -6.23343 1.35591 1.37798 1.46465 2.40010 2.82930 3.15765 3.28639 3.64401 3.75782 3.90987 4.02975 4.18206 4.23319 4.37317 4.41599 4.44346 4.56086 4.58222 4.60713 4.71237 4.75869 4.85507 4.89712 4.92188 4.94883 5.01070 5.03897 5.09911 5.15566 5.24109 5.26708 5.31838 5.43060 5.48430 5.62704 5.77357 5.90797 6.02908 6.13329 6.16378 6.22254 6.39932 6.48882 6.54785 6.96780 7.45870 8.92876 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.018253 B = 0.006060 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.638905 B = 4619.250634 C = 5210.912785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C 0.213 3.787 4 H 0.003 0.997 5 C -0.543 4.543 6 H 0.051 0.949 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.943 3.057 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.274 1.274 13 N -0.515 5.515 14 C 0.037 3.963 15 C -0.108 4.108 16 C 0.091 3.909 17 H 0.051 0.949 18 N -0.543 5.543 19 C 0.055 3.945 20 C 0.062 3.938 21 N -0.693 5.693 22 C 0.063 3.937 23 C 0.057 3.943 24 C 0.062 3.938 25 H 0.054 0.946 26 H 0.034 0.966 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.027 0.973 30 H 0.261 0.739 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.037 0.963 37 H 0.098 0.902 38 H 0.029 0.971 39 H 0.354 0.646 40 H 0.095 0.905 41 H 0.028 0.972 42 H 0.038 0.962 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.327 4.522 16.367 16.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C 0.105 3.895 4 H 0.021 0.979 5 C -0.582 4.582 6 H 0.069 0.931 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.770 3.230 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.199 1.199 13 N -0.239 5.239 14 C -0.092 4.092 15 C -0.146 4.146 16 C -0.018 4.018 17 H 0.068 0.932 18 N -0.269 5.269 19 C -0.073 4.073 20 C -0.068 4.068 21 N -0.326 5.326 22 C -0.066 4.066 23 C -0.072 4.072 24 C -0.067 4.067 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.055 0.945 37 H 0.117 0.883 38 H 0.047 0.953 39 H 0.173 0.827 40 H 0.113 0.887 41 H 0.047 0.953 42 H 0.056 0.944 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.114 4.434 15.979 16.621 hybrid contribution 2.100 -0.250 -0.669 2.219 sum 0.987 4.184 15.311 15.903 Atomic orbital electron populations 1.21555 0.96240 0.99648 1.00720 1.21404 0.94473 0.98133 1.00237 1.19160 0.91773 0.91484 0.87097 0.97894 1.21907 0.93746 1.36726 1.05786 0.93093 1.25571 1.01646 0.95087 0.95479 1.69997 1.36253 1.38555 1.10278 0.85787 0.81819 0.78309 0.77103 1.20410 1.20851 1.19899 1.65024 1.53731 1.01950 1.03212 1.22710 0.98771 0.91076 0.96597 1.22365 1.01714 0.96833 0.93678 1.22408 0.92497 0.95606 0.91317 0.93162 1.62173 1.47217 1.03711 1.13792 1.22214 0.98189 0.93153 0.93702 1.22003 0.96168 0.93667 0.94961 1.60526 1.54078 1.02622 1.15382 1.21951 0.96912 0.93850 0.93913 1.22142 0.97558 0.92798 0.94660 1.22898 0.97867 0.96119 0.89828 0.92692 0.94706 0.93595 0.91919 0.95413 0.92983 0.94993 0.91260 0.91351 0.89705 0.89775 0.94463 0.88340 0.95250 0.82685 0.88688 0.95332 0.94380 0.91176 0.92275 0.94197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.06 9.72 71.98 0.70 -4.36 16 2 C -0.10 -5.04 5.13 30.60 0.16 -4.89 16 3 C 0.21 10.76 1.80 44.17 0.08 10.84 16 4 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 5 C -0.54 -29.54 6.37 25.60 0.16 -29.38 16 6 H 0.05 2.82 6.02 -2.91 -0.02 2.81 16 7 C 0.02 1.21 5.29 84.65 0.45 1.66 16 8 N -0.91 -52.41 11.29 21.45 0.24 -52.17 16 9 Si 0.94 44.19 29.54 68.60 2.03 46.22 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 13 N -0.52 -22.07 4.76 -862.28 -4.10 -26.17 16 14 C 0.04 1.45 6.35 86.45 0.55 2.00 16 15 C -0.11 -3.35 5.36 31.47 0.17 -3.19 16 16 C 0.09 2.89 2.75 46.12 0.13 3.01 16 17 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 18 N -0.54 -15.66 4.56 -863.43 -3.94 -19.60 16 19 C 0.06 1.30 5.31 86.31 0.46 1.76 16 20 C 0.06 1.23 6.72 86.31 0.58 1.81 16 21 N -0.69 -13.43 6.90 -513.43 -3.54 -16.98 16 22 C 0.06 1.38 6.72 86.31 0.58 1.96 16 23 C 0.06 1.49 5.49 86.31 0.47 1.97 16 24 C 0.06 2.42 4.06 86.65 0.35 2.78 16 25 H 0.05 2.11 7.85 -2.39 -0.02 2.09 16 26 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.06 3.42 5.98 -2.39 -0.01 3.41 16 29 H 0.03 1.32 6.90 -2.39 -0.02 1.30 16 30 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 31 H 0.03 1.43 6.42 -2.39 -0.02 1.41 16 32 H 0.07 2.50 8.14 -2.39 -0.02 2.49 16 33 H 0.07 2.16 7.30 -2.39 -0.02 2.14 16 34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.08 1.89 6.48 -2.39 -0.02 1.88 16 36 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16 39 H 0.35 5.23 8.90 -89.69 -0.80 4.43 16 40 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.04 0.99 8.14 -2.39 -0.02 0.98 16 43 H 0.07 1.99 7.20 -2.39 -0.02 1.97 16 44 H 0.06 2.30 7.42 -2.39 -0.02 2.29 16 45 H 0.04 1.84 5.93 -2.39 -0.01 1.82 16 Total: -1.00 -59.93 331.85 -4.32 -64.26 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.15 Total: 18.47 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 4.84 Total: -14.03 kcal Atomic # 7 Polarization: -103.57 SS G_CDS: -11.34 Total: -114.91 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -59.93 -4.32 -64.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310283702.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.339 kcal (2) G-P(sol) polarization free energy of solvation -59.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds