Wall clock time and date at job start Mon Mar 30 2020 05:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47120 * 2 1 4 4 H 1.08996 * 109.46660 * 55.48117 * 3 2 1 5 5 C 1.50692 * 109.47124 * 175.48176 * 3 2 1 6 6 H 1.08000 * 120.00260 * 116.34965 * 5 3 2 7 7 C 1.37881 * 120.00364 * 296.34916 * 5 3 2 8 8 N 1.31516 * 119.99406 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00337 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46957 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47500 * 119.99930 * 9 7 5 12 12 H 1.48498 * 109.47061 * 240.00082 * 9 7 5 13 13 N 1.46900 * 109.46916 * 295.48538 * 3 2 1 14 14 C 1.47899 * 111.00000 * 299.96749 * 13 3 2 15 15 C 1.53990 * 107.05894 * 214.16328 * 14 13 3 16 16 C 1.54602 * 105.13938 * 1.21898 * 15 14 13 17 17 H 1.09001 * 110.72477 * 263.60649 * 16 15 14 18 18 N 1.46900 * 110.72295 * 140.49702 * 16 15 14 19 19 C 1.46956 * 111.00036 * 54.68415 * 18 16 15 20 20 C 1.53047 * 109.36451 * 183.18830 * 19 18 16 21 21 N 1.46952 * 109.36642 * 301.59554 * 20 19 18 22 22 C 1.46961 * 110.87878 * 59.31852 * 21 20 19 23 23 C 1.46959 * 110.99900 * 178.47968 * 18 16 15 24 24 C 1.48529 * 110.99775 * 182.57074 * 13 3 2 25 25 H 1.09004 * 109.46927 * 65.06314 * 1 2 3 26 26 H 1.09007 * 109.47222 * 185.05611 * 1 2 3 27 27 H 1.08997 * 109.47698 * 305.06154 * 1 2 3 28 28 H 1.09003 * 109.47361 * 239.99976 * 2 1 3 29 29 H 1.08998 * 109.46640 * 119.99981 * 2 1 3 30 30 H 0.97009 * 119.99183 * 179.97438 * 8 7 5 31 31 H 1.09007 * 109.91576 * 333.50850 * 14 13 3 32 32 H 1.08997 * 109.92284 * 94.60618 * 14 13 3 33 33 H 1.08995 * 110.31694 * 120.13665 * 15 14 13 34 34 H 1.09007 * 110.30676 * 242.31121 * 15 14 13 35 35 H 1.09011 * 109.48846 * 303.15462 * 19 18 16 36 36 H 1.09004 * 109.49029 * 63.21831 * 19 18 16 37 37 H 1.09003 * 109.48709 * 181.62583 * 20 19 18 38 38 H 1.09004 * 109.51113 * 61.57757 * 20 19 18 39 39 H 1.00895 * 111.00287 * 183.19230 * 21 20 19 40 40 H 1.08996 * 109.48662 * 180.71468 * 22 21 20 41 41 H 1.08998 * 109.50400 * 60.66408 * 22 21 20 42 42 H 1.08997 * 109.49208 * 296.78075 * 23 18 16 43 43 H 1.09000 * 109.48459 * 56.84656 * 23 18 16 44 44 H 1.09002 * 110.67047 * 278.15864 * 24 13 3 45 45 H 1.09005 * 110.66798 * 41.28212 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6121 1.9791 0.8467 5 6 3.5428 1.4440 0.1119 6 1 4.1440 1.8375 -0.6944 7 6 4.1504 0.9430 1.2437 8 7 3.4183 0.4634 2.2254 9 14 6.0131 0.9455 1.3827 10 1 6.6005 1.5341 0.1524 11 1 6.4206 1.7520 2.5611 12 1 6.4993 -0.4483 1.5448 13 7 1.6414 2.1028 -1.2502 14 6 2.2055 1.4010 -2.4235 15 6 2.5188 2.4731 -3.4836 16 6 2.1279 3.8169 -2.8267 17 1 1.1235 4.1154 -3.1271 18 7 3.1020 4.8633 -3.1643 19 6 3.2632 4.9829 -4.6201 20 6 4.3412 6.0249 -4.9274 21 7 3.9561 7.3136 -4.3355 22 6 3.7949 7.1941 -2.8797 23 6 2.7168 6.1521 -2.5724 24 6 2.1725 3.4884 -1.3132 25 1 -0.3633 0.4333 -0.9319 26 1 -0.3634 -1.0237 0.0906 27 1 -0.3634 0.5903 0.8411 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8458 0.1105 3.0215 31 1 3.1205 0.8805 -2.1403 32 1 1.4793 0.6886 -2.8148 33 1 3.5812 2.4658 -3.7268 34 1 1.9233 2.3033 -4.3808 35 1 3.5606 4.0191 -5.0334 36 1 2.3186 5.2944 -5.0662 37 1 4.4422 6.1362 -6.0070 38 1 5.2922 5.7003 -4.5049 39 1 4.6252 8.0324 -4.5674 40 1 3.4974 8.1578 -2.4664 41 1 4.7393 6.8829 -2.4333 42 1 1.7661 6.4769 -2.9952 43 1 2.6159 6.0407 -1.4928 44 1 1.5341 4.1711 -0.7523 45 1 3.1966 3.5252 -0.9416 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310283706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:19 Heat of formation + Delta-G solvation = 13.229884 kcal Electronic energy + Delta-G solvation = -21953.265467 eV Core-core repulsion = 19005.261324 eV Total energy + Delta-G solvation = -2948.004143 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.41909 -37.73385 -34.82023 -32.88803 -31.47031 -30.98934 -29.26550 -27.77888 -26.18187 -24.60879 -23.52562 -22.76024 -20.88245 -20.09770 -19.56934 -18.61651 -16.96255 -16.48515 -15.41803 -15.07738 -14.70385 -14.50516 -14.37204 -14.24514 -13.60015 -13.39326 -12.87951 -12.84062 -12.33860 -12.24016 -12.23153 -11.55151 -11.30532 -11.25416 -11.20716 -11.08099 -10.83908 -10.55370 -10.54935 -10.42320 -10.21166 -10.10500 -9.91001 -9.63718 -9.45636 -9.07056 -8.61371 -8.34853 -8.07632 -7.15248 -5.97914 -4.08684 3.27035 3.35869 3.40195 4.00863 4.13814 4.42055 4.92164 4.98022 5.17922 5.27760 5.30731 5.32857 5.39882 5.46161 5.49872 5.57379 5.67343 5.76642 5.90706 5.96558 5.99474 6.08944 6.30411 6.32220 6.35768 6.45881 6.58843 6.67458 6.69991 6.82971 6.86361 6.92335 7.06855 7.17919 7.19980 7.27651 7.30443 7.44284 7.65148 7.75294 7.97409 8.16340 8.26566 8.45653 9.02112 9.57802 11.03153 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.018609 B = 0.006000 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.270987 B = 4665.437202 C = 5523.424566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 C 0.205 3.795 4 H 0.041 0.959 5 C -0.539 4.539 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.885 3.115 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.516 5.516 14 C 0.042 3.958 15 C -0.121 4.121 16 C 0.079 3.921 17 H 0.045 0.955 18 N -0.530 5.530 19 C 0.056 3.944 20 C 0.059 3.941 21 N -0.693 5.693 22 C 0.059 3.941 23 C 0.058 3.942 24 C 0.053 3.947 25 H 0.045 0.955 26 H 0.025 0.975 27 H 0.040 0.960 28 H 0.032 0.968 29 H 0.085 0.915 30 H 0.260 0.740 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.036 0.964 37 H 0.074 0.926 38 H 0.039 0.961 39 H 0.340 0.660 40 H 0.076 0.924 41 H 0.040 0.960 42 H 0.037 0.963 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.449 9.047 -11.412 14.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.146 4.146 3 C 0.098 3.902 4 H 0.059 0.941 5 C -0.578 4.578 6 H 0.078 0.922 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.240 5.240 14 C -0.087 4.087 15 C -0.160 4.160 16 C -0.029 4.029 17 H 0.063 0.937 18 N -0.255 5.255 19 C -0.072 4.072 20 C -0.071 4.071 21 N -0.325 5.325 22 C -0.071 4.071 23 C -0.071 4.071 24 C -0.076 4.076 25 H 0.064 0.936 26 H 0.044 0.956 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.057 0.943 39 H 0.157 0.843 40 H 0.094 0.906 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.101 0.899 44 H 0.077 0.923 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.238 8.716 -11.151 14.207 hybrid contribution 2.136 0.100 0.193 2.147 sum 0.898 8.816 -10.958 14.093 Atomic orbital electron populations 1.21705 0.98778 0.98399 1.00580 1.21548 0.92321 0.99203 1.01543 1.19409 0.93152 0.91035 0.86627 0.94123 1.21756 0.92684 1.40686 1.02657 0.92173 1.24910 0.97711 0.95080 0.95741 1.69924 1.34729 1.40928 1.06837 0.86653 0.86435 0.77620 0.78015 1.19849 1.21089 1.21091 1.65117 1.53855 1.01167 1.03857 1.22661 0.99213 0.95840 0.90948 1.22473 1.00984 0.94409 0.98101 1.22596 0.92205 0.90544 0.97557 0.93715 1.62200 1.47758 1.05660 1.09902 1.22138 0.97748 0.98554 0.88805 1.21996 0.97052 0.89182 0.98843 1.60533 1.53020 1.07593 1.11307 1.22007 0.98601 0.98724 0.87768 1.22125 0.96284 0.88503 1.00175 1.23021 1.00540 0.91723 0.92300 0.93598 0.95595 0.94057 0.94886 0.89685 0.93020 0.91962 0.92437 0.91289 0.92627 0.90211 0.94565 0.90720 0.94290 0.84337 0.90567 0.94153 0.94464 0.89899 0.92305 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.74 37.16 0.36 -2.45 16 2 C -0.11 -2.54 5.13 -26.73 -0.14 -2.68 16 3 C 0.20 5.03 1.80 -68.87 -0.12 4.90 16 4 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 5 C -0.54 -14.25 6.29 -34.44 -0.22 -14.47 16 6 H 0.06 1.62 6.05 -52.49 -0.32 1.31 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 8 N -0.89 -24.93 11.58 55.43 0.64 -24.29 16 9 Si 0.88 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 N -0.52 -10.95 4.85 -223.89 -1.09 -12.04 16 14 C 0.04 0.82 4.97 -2.76 -0.01 0.81 16 15 C -0.12 -1.99 5.36 -25.37 -0.14 -2.13 16 16 C 0.08 1.32 2.75 -65.85 -0.18 1.14 16 17 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 18 N -0.53 -8.00 4.56 -224.26 -1.02 -9.03 16 19 C 0.06 0.73 5.31 -3.77 -0.02 0.71 16 20 C 0.06 0.66 6.72 -3.77 -0.03 0.64 16 21 N -0.69 -7.64 6.90 -113.64 -0.78 -8.42 16 22 C 0.06 0.69 6.72 -3.77 -0.03 0.66 16 23 C 0.06 0.79 5.49 -3.77 -0.02 0.77 16 24 C 0.05 1.04 5.05 -1.90 -0.01 1.03 16 25 H 0.04 0.90 7.88 -51.93 -0.41 0.49 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.03 0.76 6.89 -51.93 -0.36 0.40 16 29 H 0.08 2.24 6.27 -51.93 -0.33 1.92 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.06 1.36 6.03 -51.93 -0.31 1.05 16 32 H 0.06 1.07 8.10 -51.93 -0.42 0.65 16 33 H 0.07 1.14 7.29 -51.93 -0.38 0.77 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.01 6.47 -51.92 -0.34 0.67 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.34 3.00 8.90 -39.29 -0.35 2.65 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.08 1.18 7.20 -51.93 -0.37 0.80 16 44 H 0.06 1.13 7.95 -51.93 -0.41 0.72 16 45 H 0.07 1.61 6.14 -51.93 -0.32 1.29 16 LS Contribution 332.42 15.07 5.01 5.01 Total: -1.00 -27.70 332.42 -11.00 -38.70 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -8.10 Total: 3.20 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -0.64 Total: -9.32 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -2.25 Total: -53.77 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.70 -11.00 -38.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310283706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.929 kcal (2) G-P(sol) polarization free energy of solvation -27.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds