Wall clock time and date at job start Mon Mar 30 2020 05:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47120 * 2 1 4 4 H 1.08996 * 109.46660 * 55.48117 * 3 2 1 5 5 C 1.50692 * 109.47124 * 175.48176 * 3 2 1 6 6 H 1.08000 * 120.00260 * 116.34965 * 5 3 2 7 7 C 1.37881 * 120.00364 * 296.34916 * 5 3 2 8 8 N 1.31516 * 119.99406 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00337 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46957 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47500 * 119.99930 * 9 7 5 12 12 H 1.48498 * 109.47061 * 240.00082 * 9 7 5 13 13 N 1.46900 * 109.46916 * 295.48538 * 3 2 1 14 14 C 1.47899 * 111.00000 * 299.96749 * 13 3 2 15 15 C 1.53990 * 107.05894 * 214.16328 * 14 13 3 16 16 C 1.54602 * 105.13938 * 1.21898 * 15 14 13 17 17 H 1.09001 * 110.72477 * 263.60649 * 16 15 14 18 18 N 1.46900 * 110.72295 * 140.49702 * 16 15 14 19 19 C 1.46956 * 111.00036 * 54.68415 * 18 16 15 20 20 C 1.53047 * 109.36451 * 183.18830 * 19 18 16 21 21 N 1.46952 * 109.36642 * 301.59554 * 20 19 18 22 22 C 1.46961 * 110.87878 * 59.31852 * 21 20 19 23 23 C 1.46959 * 110.99900 * 178.47968 * 18 16 15 24 24 C 1.48529 * 110.99775 * 182.57074 * 13 3 2 25 25 H 1.09004 * 109.46927 * 65.06314 * 1 2 3 26 26 H 1.09007 * 109.47222 * 185.05611 * 1 2 3 27 27 H 1.08997 * 109.47698 * 305.06154 * 1 2 3 28 28 H 1.09003 * 109.47361 * 239.99976 * 2 1 3 29 29 H 1.08998 * 109.46640 * 119.99981 * 2 1 3 30 30 H 0.97009 * 119.99183 * 179.97438 * 8 7 5 31 31 H 1.09007 * 109.91576 * 333.50850 * 14 13 3 32 32 H 1.08997 * 109.92284 * 94.60618 * 14 13 3 33 33 H 1.08995 * 110.31694 * 120.13665 * 15 14 13 34 34 H 1.09007 * 110.30676 * 242.31121 * 15 14 13 35 35 H 1.09011 * 109.48846 * 303.15462 * 19 18 16 36 36 H 1.09004 * 109.49029 * 63.21831 * 19 18 16 37 37 H 1.09003 * 109.48709 * 181.62583 * 20 19 18 38 38 H 1.09004 * 109.51113 * 61.57757 * 20 19 18 39 39 H 1.00895 * 111.00287 * 183.19230 * 21 20 19 40 40 H 1.08996 * 109.48662 * 180.71468 * 22 21 20 41 41 H 1.08998 * 109.50400 * 60.66408 * 22 21 20 42 42 H 1.08997 * 109.49208 * 296.78075 * 23 18 16 43 43 H 1.09000 * 109.48459 * 56.84656 * 23 18 16 44 44 H 1.09002 * 110.67047 * 278.15864 * 24 13 3 45 45 H 1.09005 * 110.66798 * 41.28212 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6121 1.9791 0.8467 5 6 3.5428 1.4440 0.1119 6 1 4.1440 1.8375 -0.6944 7 6 4.1504 0.9430 1.2437 8 7 3.4183 0.4634 2.2254 9 14 6.0131 0.9455 1.3827 10 1 6.6005 1.5341 0.1524 11 1 6.4206 1.7520 2.5611 12 1 6.4993 -0.4483 1.5448 13 7 1.6414 2.1028 -1.2502 14 6 2.2055 1.4010 -2.4235 15 6 2.5188 2.4731 -3.4836 16 6 2.1279 3.8169 -2.8267 17 1 1.1235 4.1154 -3.1271 18 7 3.1020 4.8633 -3.1643 19 6 3.2632 4.9829 -4.6201 20 6 4.3412 6.0249 -4.9274 21 7 3.9561 7.3136 -4.3355 22 6 3.7949 7.1941 -2.8797 23 6 2.7168 6.1521 -2.5724 24 6 2.1725 3.4884 -1.3132 25 1 -0.3633 0.4333 -0.9319 26 1 -0.3634 -1.0237 0.0906 27 1 -0.3634 0.5903 0.8411 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8458 0.1105 3.0215 31 1 3.1205 0.8805 -2.1403 32 1 1.4793 0.6886 -2.8148 33 1 3.5812 2.4658 -3.7268 34 1 1.9233 2.3033 -4.3808 35 1 3.5606 4.0191 -5.0334 36 1 2.3186 5.2944 -5.0662 37 1 4.4422 6.1362 -6.0070 38 1 5.2922 5.7003 -4.5049 39 1 4.6252 8.0324 -4.5674 40 1 3.4974 8.1578 -2.4664 41 1 4.7393 6.8829 -2.4333 42 1 1.7661 6.4769 -2.9952 43 1 2.6159 6.0407 -1.4928 44 1 1.5341 4.1711 -0.7523 45 1 3.1966 3.5252 -0.9416 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310283706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:19 Heat of formation + Delta-G solvation = -7.137110 kcal Electronic energy + Delta-G solvation = -21954.148646 eV Core-core repulsion = 19005.261324 eV Total energy + Delta-G solvation = -2948.887322 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.73071 -39.13227 -36.30319 -34.47193 -33.32234 -32.02702 -30.81146 -29.22636 -28.03829 -25.91647 -24.82888 -24.31657 -22.51386 -21.42777 -20.82953 -20.27560 -18.46805 -18.06595 -17.01416 -16.58264 -16.07335 -15.75325 -15.55421 -15.38531 -15.11295 -14.84774 -14.63284 -14.23687 -14.02199 -13.88543 -13.28569 -13.19161 -13.07040 -12.88357 -12.48409 -12.42336 -12.33361 -12.27720 -12.18286 -11.85697 -11.72549 -11.57253 -11.51253 -11.45963 -11.24897 -10.99089 -10.43846 -9.53196 -9.21972 -8.99052 -8.04863 -6.23524 1.34233 1.37646 1.47495 2.39913 2.82515 3.15987 3.28321 3.64812 3.74547 3.91514 4.03002 4.17901 4.24222 4.36741 4.40701 4.44163 4.56032 4.58204 4.60596 4.70671 4.74972 4.85027 4.89027 4.91876 4.94162 5.01207 5.03777 5.10124 5.16325 5.23090 5.25416 5.33508 5.43468 5.47224 5.62216 5.77522 5.90370 5.99868 6.12151 6.15885 6.22561 6.38062 6.48569 6.54961 6.97184 7.45604 8.93040 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.018609 B = 0.006000 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.270987 B = 4665.437202 C = 5523.424566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.102 4.102 3 C 0.212 3.788 4 H 0.002 0.998 5 C -0.541 4.541 6 H 0.051 0.949 7 C 0.021 3.979 8 N -0.913 5.913 9 Si 0.943 3.057 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.280 1.280 13 N -0.515 5.515 14 C 0.043 3.957 15 C -0.110 4.110 16 C 0.094 3.906 17 H 0.051 0.949 18 N -0.544 5.544 19 C 0.055 3.945 20 C 0.062 3.938 21 N -0.693 5.693 22 C 0.064 3.936 23 C 0.056 3.944 24 C 0.056 3.944 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.032 0.968 28 H 0.034 0.966 29 H 0.054 0.946 30 H 0.261 0.739 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.037 0.963 37 H 0.099 0.901 38 H 0.029 0.971 39 H 0.354 0.646 40 H 0.095 0.905 41 H 0.028 0.972 42 H 0.038 0.962 43 H 0.069 0.931 44 H 0.056 0.944 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.328 9.823 -13.537 16.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.140 4.140 3 C 0.105 3.895 4 H 0.020 0.980 5 C -0.580 4.580 6 H 0.069 0.931 7 C -0.179 4.179 8 N -0.552 5.552 9 Si 0.770 3.230 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.206 1.206 13 N -0.239 5.239 14 C -0.086 4.086 15 C -0.149 4.149 16 C -0.015 4.015 17 H 0.069 0.931 18 N -0.269 5.269 19 C -0.072 4.072 20 C -0.068 4.068 21 N -0.326 5.326 22 C -0.066 4.066 23 C -0.072 4.072 24 C -0.073 4.073 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.056 0.944 37 H 0.117 0.883 38 H 0.047 0.953 39 H 0.173 0.827 40 H 0.113 0.887 41 H 0.047 0.953 42 H 0.056 0.944 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.109 9.509 -13.297 16.384 hybrid contribution 2.079 -0.105 0.843 2.246 sum 0.969 9.404 -12.453 15.635 Atomic orbital electron populations 1.21568 0.96164 0.99756 1.00773 1.21388 0.94608 0.98005 1.00037 1.19155 0.91937 0.91449 0.87000 0.97971 1.21923 0.93783 1.39983 1.02281 0.93100 1.25584 1.01558 0.95092 0.95638 1.70039 1.36170 1.41772 1.07249 0.85734 0.81836 0.77651 0.77790 1.19789 1.20843 1.20574 1.65036 1.53860 1.01843 1.03171 1.22676 0.98123 0.96781 0.91021 1.22401 1.01494 0.92948 0.98010 1.22370 0.93018 0.91395 0.94748 0.93138 1.62174 1.47236 1.05870 1.11668 1.22216 0.98411 0.99533 0.87082 1.22004 0.95793 0.88779 1.00233 1.60524 1.53650 1.07930 1.10501 1.21948 0.97280 0.98872 0.88516 1.22143 0.97140 0.88525 0.99371 1.22939 0.98371 0.91000 0.95021 0.92477 0.93436 0.94891 0.94696 0.92733 0.93015 0.94776 0.91159 0.91373 0.89678 0.89732 0.94442 0.88309 0.95266 0.82679 0.88691 0.95347 0.94370 0.91223 0.92529 0.94214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.04 9.74 71.98 0.70 -4.34 16 2 C -0.10 -4.88 5.13 30.60 0.16 -4.72 16 3 C 0.21 10.74 1.80 44.17 0.08 10.82 16 4 H 0.00 0.13 8.14 -2.39 -0.02 0.12 16 5 C -0.54 -29.42 6.29 25.60 0.16 -29.26 16 6 H 0.05 2.82 6.05 -2.91 -0.02 2.80 16 7 C 0.02 1.16 5.30 84.66 0.45 1.61 16 8 N -0.91 -52.74 11.58 21.45 0.25 -52.49 16 9 Si 0.94 44.27 29.54 68.60 2.03 46.29 16 10 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 N -0.52 -22.03 4.85 -862.27 -4.18 -26.21 16 14 C 0.04 1.63 4.97 86.45 0.43 2.06 16 15 C -0.11 -3.42 5.36 31.47 0.17 -3.25 16 16 C 0.09 2.99 2.75 46.12 0.13 3.12 16 17 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 18 N -0.54 -15.76 4.56 -863.42 -3.94 -19.69 16 19 C 0.06 1.31 5.31 86.31 0.46 1.77 16 20 C 0.06 1.23 6.72 86.31 0.58 1.81 16 21 N -0.69 -13.50 6.90 -513.45 -3.54 -17.04 16 22 C 0.06 1.39 6.72 86.31 0.58 1.97 16 23 C 0.06 1.50 5.49 86.31 0.47 1.97 16 24 C 0.06 2.22 5.05 86.65 0.44 2.66 16 25 H 0.06 2.15 7.88 -2.39 -0.02 2.13 16 26 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 27 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.03 1.62 6.89 -2.39 -0.02 1.60 16 29 H 0.05 2.95 6.27 -2.39 -0.01 2.94 16 30 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 31 H 0.03 1.50 6.03 -2.38 -0.01 1.48 16 32 H 0.07 2.49 8.10 -2.39 -0.02 2.47 16 33 H 0.07 2.14 7.29 -2.39 -0.02 2.12 16 34 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 35 H 0.08 1.90 6.47 -2.38 -0.02 1.88 16 36 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.35 5.26 8.90 -89.70 -0.80 4.46 16 40 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.07 1.99 7.20 -2.39 -0.02 1.98 16 44 H 0.06 2.24 7.95 -2.39 -0.02 2.22 16 45 H 0.04 1.85 6.14 -2.38 -0.01 1.83 16 Total: -1.00 -60.30 332.42 -4.43 -64.74 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 0.15 Total: 18.20 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: 4.80 Total: -13.79 kcal Atomic # 7 Polarization: -104.03 SS G_CDS: -11.41 Total: -115.44 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -60.30 -4.43 -64.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310283706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.600 kcal (2) G-P(sol) polarization free energy of solvation -60.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds