Wall clock time and date at job start Mon Mar 30 2020 05:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 120.00090 * 2 1 4 4 H 1.48502 * 109.47057 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46886 * 299.99682 * 3 2 1 6 6 H 1.48500 * 109.47062 * 59.99287 * 3 2 1 7 7 C 1.37885 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99843 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99668 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47226 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47368 * 179.97438 * 10 9 7 12 12 N 1.46894 * 109.47077 * 180.02562 * 11 10 9 13 13 C 1.46957 * 110.99947 * 189.99865 * 12 11 10 14 14 C 1.53055 * 109.38586 * 183.17764 * 13 12 11 15 15 N 1.46962 * 109.35961 * 301.63316 * 14 13 12 16 16 C 1.46903 * 110.99588 * 183.16566 * 15 14 13 17 17 H 1.09000 * 110.28734 * 294.88933 * 16 15 14 18 18 C 1.54259 * 110.32528 * 57.01289 * 16 15 14 19 19 C 1.54378 * 105.05707 * 118.89410 * 18 16 15 20 20 N 1.48562 * 104.59675 * 23.85784 * 19 18 16 21 21 C 1.48719 * 104.28295 * 320.56922 * 20 19 18 22 22 C 1.46960 * 110.89882 * 59.28848 * 15 14 13 23 23 C 1.46960 * 111.00268 * 313.79750 * 12 11 10 24 24 H 0.96999 * 119.99927 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.47322 * 59.99564 * 9 7 2 26 26 H 1.08999 * 109.47422 * 300.00199 * 9 7 2 27 27 H 1.08997 * 109.46922 * 60.00160 * 10 9 7 28 28 H 1.09002 * 109.46948 * 300.00077 * 10 9 7 29 29 H 1.08997 * 109.46943 * 60.00203 * 11 10 9 30 30 H 1.09004 * 109.46713 * 300.00221 * 11 10 9 31 31 H 1.09001 * 109.49470 * 303.15922 * 13 12 11 32 32 H 1.09004 * 109.48798 * 63.19613 * 13 12 11 33 33 H 1.08993 * 109.48870 * 61.57474 * 14 13 12 34 34 H 1.08998 * 109.49032 * 181.64882 * 14 13 12 35 35 H 1.09001 * 110.32750 * 237.79590 * 18 16 15 36 36 H 1.08999 * 110.31990 * 0.02562 * 18 16 15 37 37 H 1.09003 * 110.41070 * 142.63443 * 19 18 16 38 38 H 1.09001 * 110.41419 * 265.07430 * 19 18 16 39 39 H 1.00900 * 110.99968 * 200.96093 * 20 19 18 40 40 H 1.08998 * 110.39357 * 280.63847 * 21 20 19 41 41 H 1.08996 * 110.50433 * 158.14715 * 21 20 19 42 42 H 1.08993 * 109.48588 * 180.72092 * 22 15 14 43 43 H 1.08998 * 109.50869 * 60.66608 * 22 15 14 44 44 H 1.08996 * 109.48830 * 296.78048 * 23 12 11 45 45 H 1.09004 * 109.48543 * 56.82680 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4349 -6.1036 0.0018 13 6 1.7502 -7.3820 -0.2358 14 6 2.7642 -8.5252 -0.1490 15 7 3.8286 -8.3086 -1.1390 16 6 4.7832 -9.4252 -1.1384 17 1 5.3109 -9.4707 -0.1857 18 6 4.0515 -10.7558 -1.4096 19 6 4.6735 -11.2967 -2.7149 20 7 6.0148 -10.6614 -2.7818 21 6 5.7874 -9.2726 -2.3009 22 6 4.5133 -7.0302 -0.9013 23 6 3.4990 -5.8874 -0.9885 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8902 27 1 2.8719 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8895 29 1 0.8534 -5.0451 -0.8886 30 1 0.8540 -5.0445 0.8914 31 1 0.9755 -7.5252 0.5174 32 1 1.2965 -7.3728 -1.2268 33 1 3.1978 -8.5516 0.8507 34 1 2.2638 -9.4716 -0.3539 35 1 4.2215 -11.4551 -0.5910 36 1 2.9841 -10.5804 -1.5437 37 1 4.7686 -12.3816 -2.6697 38 1 4.0704 -11.0026 -3.5739 39 1 6.3693 -10.6637 -3.7264 40 1 5.3595 -8.6610 -3.0951 41 1 6.7194 -8.8350 -1.9432 42 1 5.2879 -6.8871 -1.6546 43 1 4.9670 -7.0389 0.0897 44 1 3.0655 -5.8614 -1.9882 45 1 3.9990 -4.9406 -0.7842 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310310134.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:15 Heat of formation + Delta-G solvation = 9.233288 kcal Electronic energy + Delta-G solvation = -20758.990226 eV Core-core repulsion = 17810.812777 eV Total energy + Delta-G solvation = -2948.177449 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.90830 -38.06784 -35.39704 -33.42102 -31.50384 -31.13593 -29.61987 -28.83494 -26.67309 -24.82666 -23.78364 -22.28434 -21.52223 -20.55704 -19.78696 -19.47039 -17.32609 -16.43437 -16.25406 -15.30506 -14.91197 -14.84489 -14.53624 -14.44664 -14.32523 -14.04178 -13.62840 -13.20457 -12.55142 -12.53325 -12.31418 -12.12676 -11.86529 -11.64101 -11.45887 -11.31839 -11.20066 -11.09323 -10.89738 -10.83444 -10.62769 -10.45653 -10.26350 -9.63220 -9.32887 -9.02441 -8.93477 -8.48220 -8.33798 -8.02191 -5.98919 -4.00954 3.31654 3.39027 3.43358 3.58103 4.13393 4.15400 4.35749 4.46366 4.47619 4.82643 4.88563 5.04063 5.11324 5.24106 5.29699 5.36614 5.37024 5.40606 5.44694 5.54426 5.58321 5.63329 5.67954 5.72677 5.78903 5.82432 5.93195 5.96917 6.09253 6.13691 6.30772 6.31139 6.69907 6.77051 6.86388 6.97708 6.98496 7.09953 7.38400 7.41659 7.69216 7.83993 8.01477 8.44648 9.06442 9.63047 11.12596 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.040636 B = 0.003078 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.886479 B = 9094.009939 C = 9569.520724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.111 4.111 11 C 0.057 3.943 12 N -0.541 5.541 13 C 0.056 3.944 14 C 0.057 3.943 15 N -0.535 5.535 16 C 0.079 3.921 17 H 0.051 0.949 18 C -0.121 4.121 19 C 0.038 3.962 20 N -0.669 5.669 21 C 0.042 3.958 22 C 0.057 3.943 23 C 0.053 3.947 24 H 0.259 0.741 25 H 0.013 0.987 26 H 0.016 0.984 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.029 0.971 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.038 0.962 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.042 0.958 39 H 0.337 0.663 40 H 0.054 0.946 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.042 0.958 44 H 0.038 0.962 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.328 -22.170 -4.070 24.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.149 4.149 11 C -0.070 4.070 12 N -0.266 5.266 13 C -0.072 4.072 14 C -0.071 4.071 15 N -0.261 5.261 16 C -0.030 4.030 17 H 0.069 0.931 18 C -0.159 4.159 19 C -0.091 4.091 20 N -0.297 5.297 21 C -0.087 4.087 22 C -0.071 4.071 23 C -0.076 4.076 24 H 0.069 0.931 25 H 0.032 0.968 26 H 0.034 0.966 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.061 0.939 39 H 0.152 0.848 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.475 -22.347 -3.440 24.146 hybrid contribution -0.149 1.423 -0.775 1.627 sum 8.327 -20.923 -4.215 22.910 Atomic orbital electron populations 1.69975 1.06066 1.26446 1.51095 1.25035 0.94843 0.99270 0.95398 0.86548 0.80143 0.83835 0.77557 1.19723 1.21055 1.21007 1.21286 0.93049 0.91046 1.50236 0.92661 1.19070 0.94010 0.91353 0.97133 1.21780 0.99345 0.93110 1.00675 1.22281 0.93992 0.90496 1.00267 1.62276 1.13199 1.02269 1.48848 1.22125 0.95638 0.89335 1.00120 1.22192 0.92942 0.98318 0.93644 1.62313 1.12229 1.01862 1.49660 1.22320 0.92297 0.90688 0.97663 0.93144 1.22451 1.00384 0.95542 0.97566 1.22872 0.89526 0.99553 0.97164 1.63723 1.23541 1.14319 1.28145 1.22979 0.98333 0.90336 0.97068 1.22208 0.96196 0.88540 1.00121 1.22249 0.93145 0.98154 0.94018 0.93088 0.96814 0.96564 0.92618 0.93191 0.95277 0.91083 0.90491 0.94348 0.94044 0.90367 0.91097 0.90093 0.90340 0.93913 0.84782 0.92719 0.90302 0.90562 0.93961 0.94327 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 10 C -0.11 -2.32 4.41 -26.73 -0.12 -2.44 16 11 C 0.06 1.01 5.28 -3.83 -0.02 0.99 16 12 N -0.54 -8.34 4.86 -234.46 -1.14 -9.48 16 13 C 0.06 0.73 5.58 -3.76 -0.02 0.71 16 14 C 0.06 0.64 5.31 -3.76 -0.02 0.62 16 15 N -0.53 -6.03 4.51 -224.83 -1.01 -7.05 16 16 C 0.08 0.78 2.79 -66.33 -0.18 0.60 16 17 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 18 C -0.12 -1.03 6.10 -25.35 -0.15 -1.19 16 19 C 0.04 0.30 7.47 -2.18 -0.02 0.29 16 20 N -0.67 -5.70 7.62 -109.54 -0.84 -6.53 16 21 C 0.04 0.39 5.92 -2.09 -0.01 0.38 16 22 C 0.06 0.69 5.44 -3.77 -0.02 0.67 16 23 C 0.05 0.76 4.93 -3.77 -0.02 0.74 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.01 0.38 8.14 -51.92 -0.42 -0.05 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.05 1.02 6.26 -51.93 -0.33 0.69 16 29 H 0.03 0.53 8.08 -51.93 -0.42 0.11 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.74 6.08 -51.93 -0.32 0.43 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.70 6.23 -51.93 -0.32 0.37 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.34 2.34 8.92 -39.29 -0.35 1.99 16 40 H 0.05 0.54 7.94 -51.93 -0.41 0.12 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.83 7.06 -51.93 -0.37 0.46 16 43 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.09 1.40 5.99 -51.93 -0.31 1.09 16 LS Contribution 340.51 15.07 5.13 5.13 Total: -1.00 -30.38 340.51 -11.56 -41.94 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -8.28 Total: -2.51 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -1.14 Total: -11.83 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -2.25 Total: -49.55 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.38 -11.56 -41.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310310134.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.178 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds