Wall clock time and date at job start Mon Mar 30 2020 04:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47362 * 2 1 4 4 N 1.40084 * 126.03704 * 275.63498 * 3 2 1 5 5 C 1.30839 * 108.20653 * 180.02562 * 4 3 2 6 6 C 1.50697 * 125.90115 * 180.02562 * 5 4 3 7 7 C 1.39873 * 108.20045 * 359.77684 * 5 4 3 8 8 C 1.34948 * 126.03749 * 95.65697 * 3 2 1 9 9 C 1.50703 * 126.12360 * 359.94204 * 8 3 2 10 10 N 1.46507 * 109.46936 * 218.10869 * 9 8 3 11 11 C 1.36933 * 119.99696 * 83.33281 * 10 9 8 12 12 H 1.08001 * 120.00479 * 177.64049 * 11 10 9 13 13 C 1.38819 * 120.00565 * 357.63995 * 11 10 9 14 14 N 1.31622 * 119.99731 * 51.63212 * 13 11 10 15 15 Si 1.86792 * 120.00204 * 231.64095 * 13 11 10 16 16 H 1.48494 * 109.47276 * 354.91221 * 15 13 11 17 17 H 1.48499 * 109.47243 * 114.91516 * 15 13 11 18 18 H 1.48499 * 109.47048 * 234.91210 * 15 13 11 19 19 C 1.46495 * 120.00267 * 263.05679 * 10 9 8 20 20 C 1.52998 * 109.47283 * 270.27800 * 19 10 9 21 21 O 1.42904 * 109.47036 * 64.99476 * 20 19 10 22 22 C 1.42906 * 113.99819 * 179.97438 * 21 20 19 23 23 H 1.08997 * 109.47048 * 307.83637 * 1 2 3 24 24 H 1.09008 * 109.46551 * 67.83087 * 1 2 3 25 25 H 1.08997 * 109.46990 * 187.83074 * 1 2 3 26 26 H 1.08998 * 109.46864 * 240.00069 * 2 1 3 27 27 H 1.09000 * 109.46792 * 119.99912 * 2 1 3 28 28 H 1.08998 * 109.47113 * 89.97244 * 6 5 4 29 29 H 1.08995 * 109.47225 * 209.97214 * 6 5 4 30 30 H 1.09000 * 109.47086 * 329.96991 * 6 5 4 31 31 H 1.08000 * 126.03997 * 180.23691 * 7 5 4 32 32 H 1.08996 * 109.46746 * 98.11260 * 9 8 3 33 33 H 1.08992 * 109.47357 * 338.11160 * 9 8 3 34 34 H 0.96995 * 120.00211 * 182.74133 * 14 13 11 35 35 H 1.09003 * 109.47106 * 30.27313 * 19 10 9 36 36 H 1.09002 * 109.47351 * 150.27424 * 19 10 9 37 37 H 1.08992 * 109.47302 * 184.99837 * 20 19 10 38 38 H 1.08996 * 109.47095 * 305.00020 * 20 19 10 39 39 H 1.08994 * 109.47592 * 300.00765 * 22 21 20 40 40 H 1.09009 * 109.46490 * 60.00632 * 22 21 20 41 41 H 1.08999 * 109.47114 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1883 2.1953 -1.1273 5 6 2.6411 3.3563 -0.7287 6 6 2.9633 4.5311 -1.6158 7 6 2.7691 3.3206 0.6637 8 6 2.3845 2.0938 1.0859 9 6 2.3628 1.6119 2.5136 10 7 1.9326 2.7034 3.3910 11 6 0.5982 2.9597 3.5611 12 1 0.2799 3.7395 4.2372 13 6 -0.3455 2.2174 2.8644 14 7 -0.3030 0.9023 2.8968 15 14 -1.6757 3.0849 1.8809 16 1 -1.5806 4.5498 2.1043 17 1 -1.4942 2.7915 0.4366 18 1 -3.0099 2.6028 2.3201 19 6 2.9297 3.5168 4.0912 20 6 3.2427 2.8835 5.4483 21 8 3.8643 1.6123 5.2487 22 6 4.2002 0.9329 6.4602 23 1 -0.3633 0.6304 0.8116 24 1 -0.3633 0.3878 -0.9518 25 1 -0.3633 -1.0181 0.1400 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.0769 5.1552 -1.7285 29 1 3.7652 5.1167 -1.1663 30 1 3.2810 4.1710 -2.5943 31 1 3.1158 4.1286 1.2909 32 1 3.3620 1.2860 2.8023 33 1 1.6679 0.7771 2.6048 34 1 -0.9377 0.3835 2.3783 35 1 3.8409 3.5673 3.4950 36 1 2.5376 4.5227 4.2414 37 1 3.9165 3.5339 6.0060 38 1 2.3178 2.7515 6.0096 39 1 4.8940 1.5430 7.0386 40 1 3.2952 0.7605 7.0429 41 1 4.6677 -0.0227 6.2233 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316471737.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:46 Heat of formation + Delta-G solvation = 63.004433 kcal Electronic energy + Delta-G solvation = -21897.792581 eV Core-core repulsion = 18816.113730 eV Total energy + Delta-G solvation = -3081.678851 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.33041 -37.46633 -35.55620 -34.05315 -31.87698 -30.86416 -29.68931 -28.23886 -26.80835 -25.90732 -25.53284 -23.25744 -22.37222 -20.65081 -19.44320 -18.30589 -16.86250 -15.88239 -15.76454 -15.47974 -14.76772 -14.36004 -14.30482 -13.93498 -13.61200 -13.47483 -13.05311 -12.79595 -12.47261 -12.22127 -12.01132 -11.87726 -11.61005 -11.41858 -11.34977 -11.09415 -10.89071 -10.73217 -10.69167 -10.44592 -10.16657 -10.13005 -9.84487 -9.67320 -9.08230 -8.33955 -8.11406 -7.48360 -7.08716 -6.06938 -3.03875 2.83301 3.38138 3.42284 3.55217 3.62547 3.72823 4.39316 4.53326 5.02888 5.19769 5.37945 5.58004 5.61214 5.65589 5.70906 5.72779 5.83075 5.92217 5.97443 6.00618 6.03258 6.07001 6.13710 6.19337 6.27814 6.36641 6.45604 6.60572 6.67125 6.70621 6.88747 6.94611 7.04334 7.55149 7.61934 7.75354 7.80385 8.01681 8.14752 8.68364 9.01299 9.77305 10.23511 10.92748 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.014435 B = 0.008705 C = 0.007369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.276124 B = 3215.880844 C = 3798.595000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.143 3.857 3 N -0.367 5.367 4 N -0.326 5.326 5 C 0.055 3.945 6 C -0.063 4.063 7 C -0.276 4.276 8 C 0.115 3.885 9 C 0.185 3.815 10 N -0.567 5.567 11 C -0.271 4.271 12 H 0.081 0.919 13 C 0.033 3.967 14 N -0.839 5.839 15 Si 0.826 3.174 16 H -0.277 1.277 17 H -0.285 1.285 18 H -0.297 1.297 19 C 0.151 3.849 20 C 0.039 3.961 21 O -0.379 6.379 22 C 0.035 3.965 23 H 0.097 0.903 24 H 0.046 0.954 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.133 0.867 32 H 0.058 0.942 33 H 0.116 0.884 34 H 0.256 0.744 35 H 0.051 0.949 36 H 0.067 0.933 37 H 0.029 0.971 38 H 0.049 0.951 39 H 0.029 0.971 40 H 0.036 0.964 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.489 0.353 0.278 7.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.021 3.979 3 N -0.150 5.150 4 N -0.149 5.149 5 C -0.111 4.111 6 C -0.122 4.122 7 C -0.305 4.305 8 C -0.015 4.015 9 C 0.056 3.944 10 N -0.285 5.285 11 C -0.397 4.397 12 H 0.099 0.901 13 C -0.168 4.168 14 N -0.482 5.482 15 Si 0.653 3.347 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.225 1.225 19 C 0.024 3.976 20 C -0.040 4.040 21 O -0.298 6.298 22 C -0.062 4.062 23 H 0.116 0.884 24 H 0.065 0.935 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.110 0.890 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.151 0.849 32 H 0.076 0.924 33 H 0.133 0.867 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.068 0.932 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.003 -0.701 -0.894 7.095 hybrid contribution -0.767 1.009 0.381 1.323 sum 6.237 0.307 -0.513 6.265 Atomic orbital electron populations 1.22570 0.94856 1.03122 1.03985 1.21403 0.95474 0.78363 1.02637 1.48474 1.50976 1.11603 1.03933 1.77025 1.25233 1.03218 1.09440 1.22116 0.99990 0.94375 0.94583 1.20021 1.01373 0.93323 0.97436 1.20842 1.17613 0.98807 0.93238 1.22847 0.93954 0.92354 0.92338 1.19855 0.99942 0.93336 0.81270 1.43866 1.01988 1.34624 1.48062 1.18960 0.81217 1.15213 1.24334 0.90142 1.24244 0.96337 0.94011 1.02237 1.70595 1.36615 1.04823 1.36152 0.87405 0.81812 0.82160 0.83348 1.20223 1.21104 1.22538 1.20937 0.92565 0.93949 0.90180 1.23497 0.95343 0.84141 1.01038 1.87924 1.79974 1.33130 1.28757 1.22612 0.98630 0.96784 0.88188 0.88441 0.93459 0.91645 0.90747 0.88984 0.91473 0.91166 0.91933 0.84891 0.92415 0.86686 0.93146 0.93018 0.91519 0.95274 0.93241 0.95267 0.94551 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.67 10.14 37.16 0.38 -3.29 16 2 C 0.14 2.70 6.86 -4.04 -0.03 2.68 16 3 N -0.37 -8.09 3.61 -57.14 -0.21 -8.29 16 4 N -0.33 -7.28 12.58 33.67 0.42 -6.86 16 5 C 0.05 1.14 7.22 -82.40 -0.59 0.54 16 6 C -0.06 -0.98 10.45 36.00 0.38 -0.60 16 7 C -0.28 -6.01 10.29 -40.01 -0.41 -6.42 16 8 C 0.12 2.60 6.41 -82.26 -0.53 2.07 16 9 C 0.18 4.20 5.12 -5.19 -0.03 4.18 16 10 N -0.57 -13.02 2.20 -174.61 -0.38 -13.40 16 11 C -0.27 -6.98 9.51 -15.06 -0.14 -7.12 16 12 H 0.08 2.08 8.06 -52.49 -0.42 1.65 16 13 C 0.03 0.86 4.25 -17.43 -0.07 0.78 16 14 N -0.84 -21.82 10.12 55.49 0.56 -21.26 16 15 Si 0.83 21.19 28.60 -169.99 -4.86 16.33 16 16 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 17 H -0.28 -7.69 7.11 56.52 0.40 -7.28 16 18 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 19 C 0.15 2.88 5.92 -4.05 -0.02 2.86 16 20 C 0.04 0.69 6.28 37.16 0.23 0.92 16 21 O -0.38 -6.99 9.64 -35.23 -0.34 -7.33 16 22 C 0.04 0.50 11.01 101.05 1.11 1.61 16 23 H 0.10 2.24 3.11 -51.93 -0.16 2.08 16 24 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.09 1.66 7.21 -51.93 -0.37 1.28 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.13 2.74 7.89 -52.49 -0.41 2.33 16 32 H 0.06 1.27 7.24 -51.93 -0.38 0.89 16 33 H 0.12 2.86 4.43 -51.93 -0.23 2.63 16 34 H 0.26 6.43 6.57 -40.82 -0.27 6.17 16 35 H 0.05 0.94 8.03 -51.93 -0.42 0.52 16 36 H 0.07 1.20 8.04 -51.93 -0.42 0.78 16 37 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.04 0.52 8.14 -51.92 -0.42 0.09 16 41 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 331.66 15.07 5.00 5.00 Total: -1.00 -29.92 331.66 -6.07 -35.98 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.53 Total: 1.62 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 0.27 Total: -1.79 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.39 Total: -49.82 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -0.34 Total: -7.33 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.86 Total: 16.33 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.92 -6.07 -35.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316471737.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.989 kcal (2) G-P(sol) polarization free energy of solvation -29.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds