Wall clock time and date at job start Mon Mar 30 2020 04:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47362 * 2 1 4 4 N 1.40084 * 126.03704 * 275.63498 * 3 2 1 5 5 C 1.30839 * 108.20653 * 180.02562 * 4 3 2 6 6 C 1.50697 * 125.90115 * 180.02562 * 5 4 3 7 7 C 1.39873 * 108.20045 * 359.77684 * 5 4 3 8 8 C 1.34948 * 126.03749 * 95.65697 * 3 2 1 9 9 C 1.50703 * 126.12360 * 359.94204 * 8 3 2 10 10 N 1.46507 * 109.46936 * 218.10869 * 9 8 3 11 11 C 1.36933 * 119.99696 * 83.33281 * 10 9 8 12 12 H 1.08001 * 120.00479 * 177.64049 * 11 10 9 13 13 C 1.38819 * 120.00565 * 357.63995 * 11 10 9 14 14 N 1.31622 * 119.99731 * 51.63212 * 13 11 10 15 15 Si 1.86792 * 120.00204 * 231.64095 * 13 11 10 16 16 H 1.48494 * 109.47276 * 354.91221 * 15 13 11 17 17 H 1.48499 * 109.47243 * 114.91516 * 15 13 11 18 18 H 1.48499 * 109.47048 * 234.91210 * 15 13 11 19 19 C 1.46495 * 120.00267 * 263.05679 * 10 9 8 20 20 C 1.52998 * 109.47283 * 270.27800 * 19 10 9 21 21 O 1.42904 * 109.47036 * 64.99476 * 20 19 10 22 22 C 1.42906 * 113.99819 * 179.97438 * 21 20 19 23 23 H 1.08997 * 109.47048 * 307.83637 * 1 2 3 24 24 H 1.09008 * 109.46551 * 67.83087 * 1 2 3 25 25 H 1.08997 * 109.46990 * 187.83074 * 1 2 3 26 26 H 1.08998 * 109.46864 * 240.00069 * 2 1 3 27 27 H 1.09000 * 109.46792 * 119.99912 * 2 1 3 28 28 H 1.08998 * 109.47113 * 89.97244 * 6 5 4 29 29 H 1.08995 * 109.47225 * 209.97214 * 6 5 4 30 30 H 1.09000 * 109.47086 * 329.96991 * 6 5 4 31 31 H 1.08000 * 126.03997 * 180.23691 * 7 5 4 32 32 H 1.08996 * 109.46746 * 98.11260 * 9 8 3 33 33 H 1.08992 * 109.47357 * 338.11160 * 9 8 3 34 34 H 0.96995 * 120.00211 * 182.74133 * 14 13 11 35 35 H 1.09003 * 109.47106 * 30.27313 * 19 10 9 36 36 H 1.09002 * 109.47351 * 150.27424 * 19 10 9 37 37 H 1.08992 * 109.47302 * 184.99837 * 20 19 10 38 38 H 1.08996 * 109.47095 * 305.00020 * 20 19 10 39 39 H 1.08994 * 109.47592 * 300.00765 * 22 21 20 40 40 H 1.09009 * 109.46490 * 60.00632 * 22 21 20 41 41 H 1.08999 * 109.47114 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1883 2.1953 -1.1273 5 6 2.6411 3.3563 -0.7287 6 6 2.9633 4.5311 -1.6158 7 6 2.7691 3.3206 0.6637 8 6 2.3845 2.0938 1.0859 9 6 2.3628 1.6119 2.5136 10 7 1.9326 2.7034 3.3910 11 6 0.5982 2.9597 3.5611 12 1 0.2799 3.7395 4.2372 13 6 -0.3455 2.2174 2.8644 14 7 -0.3030 0.9023 2.8968 15 14 -1.6757 3.0849 1.8809 16 1 -1.5806 4.5498 2.1043 17 1 -1.4942 2.7915 0.4366 18 1 -3.0099 2.6028 2.3201 19 6 2.9297 3.5168 4.0912 20 6 3.2427 2.8835 5.4483 21 8 3.8643 1.6123 5.2487 22 6 4.2002 0.9329 6.4602 23 1 -0.3633 0.6304 0.8116 24 1 -0.3633 0.3878 -0.9518 25 1 -0.3633 -1.0181 0.1400 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.0769 5.1552 -1.7285 29 1 3.7652 5.1167 -1.1663 30 1 3.2810 4.1710 -2.5943 31 1 3.1158 4.1286 1.2909 32 1 3.3620 1.2860 2.8023 33 1 1.6679 0.7771 2.6048 34 1 -0.9377 0.3835 2.3783 35 1 3.8409 3.5673 3.4950 36 1 2.5376 4.5227 4.2414 37 1 3.9165 3.5339 6.0060 38 1 2.3178 2.7515 6.0096 39 1 4.8940 1.5430 7.0386 40 1 3.2952 0.7605 7.0429 41 1 4.6677 -0.0227 6.2233 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316471737.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:45 Heat of formation + Delta-G solvation = 45.487975 kcal Electronic energy + Delta-G solvation = -21898.552152 eV Core-core repulsion = 18816.113730 eV Total energy + Delta-G solvation = -3082.438422 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.96269 -38.88188 -37.24516 -35.59644 -33.73738 -32.39115 -31.23236 -29.85785 -28.27230 -27.47182 -27.05164 -24.90891 -23.90713 -22.27610 -21.09427 -19.93125 -18.68600 -17.51507 -17.23128 -16.95144 -16.42163 -16.06904 -15.70140 -15.51730 -15.33438 -15.14875 -14.58418 -14.28166 -14.02910 -13.62389 -13.50918 -13.40006 -13.20509 -12.94434 -12.84565 -12.65059 -12.59201 -12.50185 -12.32123 -12.10739 -11.98047 -11.81413 -11.68043 -11.31181 -10.40733 -10.25133 -9.75739 -9.18240 -8.94545 -8.04689 -5.00073 1.16795 1.34363 1.46544 1.53326 1.83336 2.09214 2.51839 3.00971 3.15770 3.62863 3.78604 4.13908 4.19344 4.21490 4.36194 4.44696 4.51572 4.55885 4.62476 4.67805 4.71566 4.77557 4.79257 4.85307 4.88833 4.92232 4.97139 5.02941 5.10141 5.20395 5.25077 5.32313 5.41137 5.78588 5.79176 6.05376 6.20665 6.42148 6.49153 7.02122 7.11381 7.88092 8.32332 8.93440 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.014435 B = 0.008705 C = 0.007369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.276124 B = 3215.880844 C = 3798.595000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.138 3.862 3 N -0.376 5.376 4 N -0.349 5.349 5 C 0.050 3.950 6 C -0.060 4.060 7 C -0.289 4.289 8 C 0.100 3.900 9 C 0.196 3.804 10 N -0.575 5.575 11 C -0.268 4.268 12 H 0.076 0.924 13 C 0.011 3.989 14 N -0.844 5.844 15 Si 0.850 3.150 16 H -0.282 1.282 17 H -0.308 1.308 18 H -0.302 1.302 19 C 0.146 3.854 20 C 0.048 3.952 21 O -0.407 6.407 22 C 0.031 3.969 23 H 0.066 0.934 24 H 0.036 0.964 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.141 0.859 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.257 0.743 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.029 0.971 39 H 0.053 0.947 40 H 0.031 0.969 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.995 0.744 0.469 9.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.018 3.982 3 N -0.159 5.159 4 N -0.173 5.173 5 C -0.116 4.116 6 C -0.119 4.119 7 C -0.318 4.318 8 C -0.031 4.031 9 C 0.067 3.933 10 N -0.294 5.294 11 C -0.395 4.395 12 H 0.094 0.906 13 C -0.189 4.189 14 N -0.488 5.488 15 Si 0.679 3.321 16 H -0.208 1.208 17 H -0.237 1.237 18 H -0.231 1.231 19 C 0.020 3.980 20 C -0.031 4.031 21 O -0.326 6.326 22 C -0.066 4.066 23 H 0.085 0.915 24 H 0.056 0.944 25 H 0.112 0.888 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.094 0.906 31 H 0.159 0.841 32 H 0.080 0.920 33 H 0.113 0.887 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.050 0.950 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.527 -0.307 -0.679 8.560 hybrid contribution -1.178 0.895 0.343 1.519 sum 7.349 0.588 -0.337 7.381 Atomic orbital electron populations 1.22494 0.95438 1.04089 1.02017 1.21601 0.94953 0.77574 1.04099 1.48720 1.51031 1.12430 1.03715 1.76987 1.26193 1.04102 1.10018 1.22876 0.98600 0.95113 0.94969 1.20182 1.02533 0.91765 0.97407 1.21087 1.17821 0.98793 0.94079 1.22878 0.94691 0.93080 0.92403 1.19629 0.99378 0.92746 0.81535 1.43952 1.01746 1.35071 1.48643 1.19087 0.82621 1.14522 1.23269 0.90574 1.24374 0.96720 0.94326 1.03452 1.70582 1.36749 1.04723 1.36728 0.87005 0.81490 0.81533 0.82027 1.20788 1.23659 1.23057 1.21136 0.92044 0.93914 0.90901 1.23291 0.95355 0.84661 0.99799 1.87873 1.80064 1.33603 1.31098 1.22794 0.99053 0.97604 0.87116 0.91533 0.94448 0.88805 0.88344 0.88373 0.90802 0.88663 0.90551 0.84094 0.91997 0.88687 0.93018 0.91910 0.90575 0.91857 0.95271 0.92835 0.95035 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.07 10.14 71.98 0.73 -6.34 16 2 C 0.14 5.13 6.86 86.38 0.59 5.73 16 3 N -0.38 -16.36 3.61 -334.69 -1.21 -17.57 16 4 N -0.35 -15.32 12.58 -47.38 -0.60 -15.92 16 5 C 0.05 2.00 7.22 43.10 0.31 2.31 16 6 C -0.06 -1.73 10.45 71.23 0.74 -0.99 16 7 C -0.29 -12.25 10.29 21.99 0.23 -12.02 16 8 C 0.10 4.45 6.41 41.41 0.27 4.72 16 9 C 0.20 8.81 5.12 85.63 0.44 9.25 16 10 N -0.58 -25.94 2.20 -706.34 -1.55 -27.49 16 11 C -0.27 -13.68 9.51 84.04 0.80 -12.88 16 12 H 0.08 3.90 8.06 -2.91 -0.02 3.88 16 13 C 0.01 0.60 4.25 84.86 0.36 0.96 16 14 N -0.84 -44.03 10.12 21.65 0.22 -43.81 16 15 Si 0.85 43.87 28.60 68.60 1.96 45.83 16 16 H -0.28 -14.62 7.11 99.48 0.71 -13.91 16 17 H -0.31 -17.00 7.11 99.48 0.71 -16.29 16 18 H -0.30 -15.61 7.11 99.48 0.71 -14.91 16 19 C 0.15 5.31 5.92 86.38 0.51 5.82 16 20 C 0.05 1.58 6.28 71.98 0.45 2.03 16 21 O -0.41 -14.24 9.64 -148.98 -1.44 -15.67 16 22 C 0.03 0.81 11.01 113.37 1.25 2.06 16 23 H 0.07 3.07 3.11 -2.39 -0.01 3.06 16 24 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 25 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 26 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 27 H 0.10 3.47 7.21 -2.39 -0.02 3.46 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.14 5.59 7.89 -2.91 -0.02 5.57 16 32 H 0.06 2.68 7.24 -2.39 -0.02 2.66 16 33 H 0.10 4.71 4.43 -2.39 -0.01 4.70 16 34 H 0.26 13.03 6.57 -92.71 -0.61 12.42 16 35 H 0.06 2.14 8.03 -2.39 -0.02 2.12 16 36 H 0.08 2.60 8.04 -2.39 -0.02 2.58 16 37 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.03 0.84 8.14 -2.38 -0.02 0.83 16 41 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -63.43 331.66 5.23 -58.21 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 1.16 Total: 15.79 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 6.68 Total: 0.64 kcal Atomic # 7 Polarization: -101.65 SS G_CDS: -3.14 Total: -104.79 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -1.44 Total: -15.67 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.96 Total: 45.83 kcal Total: -63.43 5.23 -58.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316471737.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.694 kcal (2) G-P(sol) polarization free energy of solvation -63.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds