Wall clock time and date at job start Mon Mar 30 2020 04:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47070 * 2 1 4 4 C 1.50706 * 109.46747 * 120.00327 * 2 1 3 5 5 H 1.07990 * 120.00047 * 119.99883 * 4 2 1 6 6 C 1.37880 * 119.99446 * 299.99711 * 4 2 1 7 7 N 1.31519 * 119.99370 * 180.02562 * 6 4 2 8 8 Si 1.86793 * 120.00235 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46946 * 90.00672 * 8 6 4 10 10 H 1.48503 * 109.46814 * 209.99984 * 8 6 4 11 11 H 1.48493 * 109.47331 * 330.00080 * 8 6 4 12 12 N 1.46898 * 109.46847 * 239.99812 * 2 1 3 13 13 C 1.46904 * 110.99974 * 306.05010 * 12 2 1 14 14 C 1.46893 * 111.00172 * 70.00471 * 12 2 1 15 15 C 1.50702 * 109.47509 * 164.36623 * 14 12 2 16 16 N 1.31065 * 126.66219 * 85.46617 * 15 14 12 17 17 N 1.28842 * 107.99192 * 180.02562 * 16 15 14 18 18 N 1.28732 * 109.39895 * 0.02562 * 17 16 15 19 19 N 1.29019 * 108.80591 * 359.97438 * 18 17 16 20 20 C 1.46504 * 126.43458 * 179.97438 * 19 18 17 21 21 C 1.53001 * 109.47387 * 354.91140 * 20 19 18 22 22 C 1.53004 * 109.47010 * 114.91275 * 20 19 18 23 23 C 1.53001 * 109.47085 * 234.90504 * 20 19 18 24 24 H 1.08998 * 109.46981 * 300.00617 * 1 2 3 25 25 H 1.09001 * 109.46802 * 59.99834 * 1 2 3 26 26 H 1.08997 * 109.47778 * 180.02562 * 1 2 3 27 27 H 0.97003 * 119.99408 * 179.97438 * 7 6 4 28 28 H 1.09009 * 109.46916 * 189.76825 * 13 12 2 29 29 H 1.08995 * 109.47123 * 309.76414 * 13 12 2 30 30 H 1.08994 * 109.46996 * 69.76845 * 13 12 2 31 31 H 1.09000 * 109.47366 * 44.36496 * 14 12 2 32 32 H 1.09005 * 109.47353 * 284.36742 * 14 12 2 33 33 H 1.08995 * 109.46892 * 59.99661 * 21 20 19 34 34 H 1.08999 * 109.46746 * 180.02562 * 21 20 19 35 35 H 1.08998 * 109.46497 * 299.99498 * 21 20 19 36 36 H 1.08995 * 109.47393 * 65.07245 * 22 20 19 37 37 H 1.08991 * 109.47441 * 185.08081 * 22 20 19 38 38 H 1.09009 * 109.46746 * 305.07974 * 22 20 19 39 39 H 1.09005 * 109.46933 * 53.06006 * 23 20 19 40 40 H 1.08998 * 109.46883 * 173.05775 * 23 20 19 41 41 H 1.08998 * 109.47761 * 293.05805 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 2.1378 -0.8592 3.5566 8 14 0.6259 1.2798 2.6541 9 1 -0.8021 0.8746 2.6993 10 1 0.9772 1.9953 3.9070 11 1 0.8493 2.1773 1.4923 12 7 2.0196 -0.6925 -1.1994 13 6 1.4341 -2.0355 -1.3078 14 6 1.7530 0.0971 -2.4090 15 6 2.5848 -0.4327 -3.5485 16 7 2.2753 -1.4235 -4.3487 17 7 3.2402 -1.5723 -5.1895 18 7 4.1574 -0.7025 -4.9460 19 7 3.7903 0.0190 -3.9413 20 6 4.5444 1.1220 -3.3405 21 6 5.9178 1.2237 -4.0071 22 6 3.7806 2.4322 -3.5437 23 6 4.7220 0.8624 -1.8432 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.9038 -0.5275 4.4376 28 1 1.9388 -2.5890 -2.0997 29 1 1.5562 -2.5625 -0.3615 30 1 0.3731 -1.9514 -1.5426 31 1 2.0102 1.1404 -2.2259 32 1 0.6961 0.0232 -2.6656 33 1 5.7911 1.4087 -5.0737 34 1 6.4789 2.0441 -3.5597 35 1 6.4618 0.2904 -3.8622 36 1 2.8405 2.3938 -2.9935 37 1 4.3822 3.2640 -3.1775 38 1 3.5750 2.5720 -4.6050 39 1 5.1550 -0.1270 -1.6949 40 1 5.3855 1.6165 -1.4199 41 1 3.7523 0.9125 -1.3480 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330933053.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:20 Heat of formation + Delta-G solvation = 132.131688 kcal Electronic energy + Delta-G solvation = -21998.461750 eV Core-core repulsion = 18952.073232 eV Total energy + Delta-G solvation = -3046.388517 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.175 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.94979 -38.15802 -37.47460 -33.43139 -32.75901 -31.95798 -29.77793 -28.10778 -27.57896 -27.13768 -25.39064 -24.55565 -23.65653 -22.14408 -20.25409 -19.54388 -16.92126 -16.83129 -16.62819 -15.67967 -15.01368 -14.76055 -14.40728 -14.12573 -13.96135 -13.35138 -13.21449 -12.77881 -12.65100 -12.62000 -12.43295 -12.32864 -11.96921 -11.81905 -11.63181 -11.60488 -11.50260 -11.33635 -11.02040 -10.87115 -10.71184 -10.53747 -10.45398 -10.14804 -9.87956 -9.57094 -9.22074 -8.70099 -7.66769 -6.17357 -4.16964 1.50491 2.14022 2.50819 3.16340 3.23337 3.29278 4.15655 4.18080 4.27851 4.43428 4.60482 4.62957 4.77087 5.13437 5.19577 5.22184 5.38778 5.41360 5.50396 5.61971 5.62438 5.71565 5.79034 5.83279 5.90957 5.96540 6.10306 6.12946 6.15199 6.18352 6.41463 6.42931 6.51049 6.58088 6.81780 7.00253 7.42019 7.68045 7.79942 8.49687 8.90233 8.90939 9.43075 10.95438 Molecular weight = 267.18amu Principal moments of inertia in cm(-1) A = 0.024028 B = 0.006331 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.044421 B = 4421.906416 C = 4877.307522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.184 3.816 3 H 0.040 0.960 4 C -0.504 4.504 5 H 0.084 0.916 6 C 0.072 3.928 7 N -0.895 5.895 8 Si 0.885 3.115 9 H -0.280 1.280 10 H -0.296 1.296 11 H -0.269 1.269 12 N -0.516 5.516 13 C 0.030 3.970 14 C 0.120 3.880 15 C 0.212 3.788 16 N -0.308 5.308 17 N -0.089 5.089 18 N -0.104 5.104 19 N -0.290 5.290 20 C 0.164 3.836 21 C -0.147 4.147 22 C -0.165 4.165 23 C -0.165 4.165 24 H 0.047 0.953 25 H 0.029 0.971 26 H 0.061 0.939 27 H 0.265 0.735 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.024 0.976 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.947 8.364 -11.634 14.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.077 3.923 3 H 0.058 0.942 4 C -0.542 4.542 5 H 0.101 0.899 6 C -0.130 4.130 7 N -0.533 5.533 8 Si 0.715 3.285 9 H -0.207 1.207 10 H -0.224 1.224 11 H -0.194 1.194 12 N -0.241 5.241 13 C -0.118 4.118 14 C -0.012 4.012 15 C -0.067 4.067 16 N -0.158 5.158 17 N -0.082 5.082 18 N -0.089 5.089 19 N -0.093 5.093 20 C 0.081 3.919 21 C -0.204 4.204 22 C -0.223 4.223 23 C -0.223 4.223 24 H 0.065 0.935 25 H 0.048 0.952 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.042 0.958 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.721 7.412 -12.480 14.985 hybrid contribution -1.567 1.478 0.881 2.327 sum 2.155 8.890 -11.599 14.772 Atomic orbital electron populations 1.22873 1.01253 1.01609 0.99093 1.19851 0.89091 0.95030 0.88368 0.94208 1.20845 1.31905 1.13986 0.87465 0.89851 1.24902 0.95765 0.96552 0.95790 1.69873 1.45343 1.40156 0.97944 0.86922 0.80728 0.83823 0.77009 1.20687 1.22364 1.19378 1.62208 1.58973 1.02881 0.99993 1.22367 0.96305 0.90315 1.02784 1.20749 0.95706 0.97844 0.86870 1.26020 0.87149 0.94154 0.99341 1.74970 1.21574 1.14707 1.04541 1.78524 0.96156 1.15363 1.18206 1.78718 1.22343 1.03458 1.04417 1.48787 1.14346 1.24958 1.21204 1.21358 0.92239 0.82901 0.95400 1.22005 0.93313 1.03814 1.01315 1.22373 1.01530 0.95231 1.03152 1.22423 1.06038 1.03695 0.90173 0.93461 0.95235 0.92038 0.92495 0.92877 0.89635 0.95774 0.88647 0.91202 0.91190 0.89990 0.90980 0.90822 0.89094 0.91588 0.90941 0.89984 0.88491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.71 7.95 37.16 0.30 -3.41 16 2 C 0.18 3.81 1.60 -68.86 -0.11 3.70 16 3 H 0.04 0.82 6.63 -51.93 -0.34 0.48 16 4 C -0.50 -12.86 8.41 -34.44 -0.29 -13.15 16 5 H 0.08 2.38 7.42 -52.49 -0.39 1.99 16 6 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 7 N -0.90 -25.86 13.96 55.43 0.77 -25.09 16 8 Si 0.88 20.23 24.37 -169.99 -4.14 16.09 16 9 H -0.28 -6.35 6.87 56.52 0.39 -5.96 16 10 H -0.30 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -5.70 6.53 56.52 0.37 -5.33 16 12 N -0.52 -9.52 3.74 -237.73 -0.89 -10.41 16 13 C 0.03 0.57 8.34 60.07 0.50 1.07 16 14 C 0.12 1.85 3.74 -4.98 -0.02 1.83 16 15 C 0.21 3.45 6.57 -155.44 -1.02 2.43 16 16 N -0.31 -5.64 11.72 32.70 0.38 -5.25 16 17 N -0.09 -1.65 13.43 60.35 0.81 -0.84 16 18 N -0.10 -1.73 12.33 60.35 0.74 -0.98 16 19 N -0.29 -4.30 3.20 -45.63 -0.15 -4.45 16 20 C 0.16 1.86 1.06 -131.81 -0.14 1.72 16 21 C -0.15 -1.39 7.98 37.16 0.30 -1.09 16 22 C -0.16 -1.48 8.49 37.16 0.32 -1.17 16 23 C -0.17 -2.08 8.27 37.16 0.31 -1.77 16 24 H 0.05 0.98 3.27 -51.93 -0.17 0.81 16 25 H 0.03 0.49 7.05 -51.93 -0.37 0.12 16 26 H 0.06 1.21 6.55 -51.93 -0.34 0.87 16 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.05 0.99 7.13 -51.92 -0.37 0.62 16 29 H 0.08 1.76 6.65 -51.93 -0.35 1.42 16 30 H 0.02 0.42 6.69 -51.93 -0.35 0.07 16 31 H 0.10 1.28 4.08 -51.93 -0.21 1.07 16 32 H 0.07 1.05 7.18 -51.93 -0.37 0.67 16 33 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.69 5.59 -51.93 -0.29 0.40 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.10 1.42 4.36 -51.93 -0.23 1.19 16 LS Contribution 309.00 15.07 4.66 4.66 Total: -1.00 -29.69 309.00 -3.68 -33.38 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -5.91 Total: 0.91 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 0.04 Total: -8.01 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 1.68 Total: -47.02 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.14 Total: 16.09 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.69 -3.68 -33.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330933053.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.508 kcal (2) G-P(sol) polarization free energy of solvation -29.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds