Wall clock time and date at job start Mon Mar 30 2020 04:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47070 * 111.00067 * 2 1 4 4 C 1.52765 * 108.80143 * 187.92192 * 3 2 1 5 5 C 1.53081 * 110.29946 * 299.04504 * 4 3 2 6 6 H 1.08999 * 112.58255 * 285.89762 * 5 4 3 7 7 C 1.55946 * 106.85740 * 161.34988 * 5 4 3 8 8 C 1.54571 * 102.40344 * 283.47089 * 7 5 4 9 9 N 1.47514 * 106.99060 * 336.15747 * 8 7 5 10 10 C 1.34774 * 126.02826 * 178.70606 * 9 8 7 11 11 O 1.21592 * 120.00301 * 180.02562 * 10 9 8 12 12 N 1.34777 * 119.99902 * 0.02562 * 10 9 8 13 13 C 1.46506 * 119.99873 * 179.97438 * 12 10 9 14 14 C 1.50699 * 109.46928 * 180.02562 * 13 12 10 15 15 H 1.08003 * 119.99963 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00270 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00302 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 119.99832 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47310 * 89.99428 * 18 16 14 20 20 H 1.48491 * 109.47296 * 209.99911 * 18 16 14 21 21 H 1.48502 * 109.46905 * 329.99956 * 18 16 14 22 22 C 1.46838 * 107.94479 * 358.97431 * 9 8 7 23 23 H 1.09005 * 109.29992 * 268.99258 * 22 9 8 24 24 C 1.46701 * 111.00474 * 122.96582 * 2 1 3 25 25 H 1.08996 * 109.47630 * 63.95346 * 1 2 3 26 26 H 1.09007 * 109.46787 * 183.95442 * 1 2 3 27 27 H 1.09008 * 109.46799 * 303.94801 * 1 2 3 28 28 H 1.09004 * 109.58049 * 68.12464 * 3 2 1 29 29 H 1.09003 * 109.58050 * 307.71453 * 3 2 1 30 30 H 1.08994 * 109.33233 * 178.78746 * 4 3 2 31 31 H 1.09005 * 109.33240 * 59.29827 * 4 3 2 32 32 H 1.08994 * 110.82584 * 165.23975 * 7 5 4 33 33 H 1.09004 * 110.98890 * 41.77065 * 7 5 4 34 34 H 1.08995 * 109.92724 * 216.82385 * 8 7 5 35 35 H 1.08997 * 110.10481 * 95.58620 * 8 7 5 36 36 H 0.96995 * 120.00018 * 0.27633 * 12 10 9 37 37 H 1.09000 * 109.47212 * 300.00355 * 13 12 10 38 38 H 1.09001 * 109.46577 * 60.00430 * 13 12 10 39 39 H 0.97002 * 119.99998 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.14475 * 295.77114 * 24 2 1 41 41 H 1.08995 * 109.15076 * 54.98635 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9961 1.3730 0.0000 4 6 3.5097 1.3193 -0.1993 5 6 4.1687 0.5429 0.9436 6 1 4.1969 1.1107 1.8737 7 6 5.5850 0.1208 0.4460 8 6 5.2669 -1.0625 -0.4962 9 7 3.9661 -1.6137 -0.0719 10 6 3.3147 -2.6425 -0.6496 11 8 2.2426 -3.0083 -0.2077 12 7 3.8515 -3.2658 -1.7172 13 6 3.1436 -4.3844 -2.3448 14 6 3.9511 -4.9007 -3.5078 15 1 4.8968 -4.4413 -3.7549 16 6 3.4821 -5.9589 -4.2569 17 7 4.1866 -6.4092 -5.2721 18 14 1.8455 -6.7522 -3.8308 19 1 0.7556 -6.0673 -4.5714 20 1 1.8769 -8.1871 -4.2115 21 1 1.6027 -6.6326 -2.3706 22 6 3.5031 -0.8398 1.0869 23 1 3.8574 -1.3145 2.0020 24 6 1.9948 -0.7452 1.1490 25 1 -0.3634 0.4512 -0.9232 26 1 -0.3633 -1.0253 0.0709 27 1 -0.3633 0.5739 0.8526 28 1 1.7698 1.8512 0.9531 29 1 1.5405 1.9392 -0.8124 30 1 3.9068 2.3341 -0.2223 31 1 3.7318 0.8261 -1.1457 32 1 6.2077 -0.2042 1.2795 33 1 6.0650 0.9329 -0.1004 34 1 6.0402 -1.8255 -0.4085 35 1 5.2043 -0.7141 -1.5272 36 1 4.7086 -2.9766 -2.0673 37 1 3.0062 -5.1826 -1.6154 38 1 2.1705 -4.0451 -2.6998 39 1 3.8568 -7.1539 -5.7989 40 1 1.7050 -0.2361 2.0682 41 1 1.5715 -1.7496 1.1479 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336364214.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:12 Heat of formation + Delta-G solvation = -38.898795 kcal Electronic energy + Delta-G solvation = -21671.948812 eV Core-core repulsion = 18585.851105 eV Total energy + Delta-G solvation = -3086.097707 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.79199 -39.62017 -37.39192 -36.08413 -34.41141 -33.63946 -31.46373 -30.83493 -29.31342 -27.03135 -24.87237 -24.24632 -23.50904 -22.58498 -21.17394 -20.30580 -19.03079 -18.13674 -17.42364 -16.97425 -16.47568 -16.27373 -15.99325 -15.47154 -15.43140 -15.15517 -14.74067 -14.35349 -14.25462 -14.05466 -13.87326 -13.48526 -13.19287 -13.00874 -12.85758 -12.83819 -12.68392 -12.51355 -12.32450 -11.91837 -11.65469 -11.60070 -11.45978 -11.12878 -10.90998 -10.61130 -9.96722 -9.28589 -9.14482 -8.39560 -6.45854 1.32844 1.34037 1.48416 1.83433 2.29035 2.38230 2.96082 3.07300 3.21515 3.64413 3.67227 3.83683 4.15822 4.25755 4.30287 4.37426 4.42744 4.51749 4.56635 4.62903 4.69455 4.74300 4.78837 4.90465 4.94994 4.97445 5.03097 5.08010 5.11072 5.23191 5.26098 5.28987 5.41242 5.59785 5.67719 6.09180 6.18271 6.27949 6.37505 6.55741 7.16137 7.27852 7.81836 8.75398 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.024835 B = 0.005454 C = 0.004856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.189827 B = 5132.210496 C = 5764.483718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.553 5.553 3 C 0.051 3.949 4 C -0.106 4.106 5 C -0.089 4.089 6 H 0.128 0.872 7 C -0.111 4.111 8 C 0.091 3.909 9 N -0.623 5.623 10 C 0.719 3.281 11 O -0.629 6.629 12 N -0.727 5.727 13 C 0.258 3.742 14 C -0.544 4.544 15 H 0.056 0.944 16 C 0.028 3.972 17 N -0.931 5.931 18 Si 0.938 3.062 19 H -0.266 1.266 20 H -0.270 1.270 21 H -0.263 1.263 22 C 0.156 3.844 23 H 0.070 0.930 24 C 0.044 3.956 25 H 0.068 0.932 26 H 0.045 0.955 27 H 0.038 0.962 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.398 0.602 37 H 0.007 0.993 38 H 0.004 0.996 39 H 0.273 0.727 40 H 0.049 0.951 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.617 19.341 14.739 24.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.278 5.278 3 C -0.076 4.076 4 C -0.144 4.144 5 C -0.108 4.108 6 H 0.145 0.855 7 C -0.149 4.149 8 C -0.032 4.032 9 N -0.361 5.361 10 C 0.421 3.579 11 O -0.512 6.512 12 N -0.380 5.380 13 C 0.134 3.866 14 C -0.582 4.582 15 H 0.074 0.926 16 C -0.172 4.172 17 N -0.570 5.570 18 Si 0.762 3.238 19 H -0.191 1.191 20 H -0.195 1.195 21 H -0.187 1.187 22 C 0.052 3.948 23 H 0.088 0.912 24 C -0.084 4.084 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.232 0.768 37 H 0.025 0.975 38 H 0.022 0.978 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.030 18.610 14.411 23.537 hybrid contribution -0.675 -0.519 0.081 0.855 sum -0.705 18.091 14.492 23.190 Atomic orbital electron populations 1.22224 0.87228 1.00915 1.00966 1.62035 1.08003 1.14681 1.43068 1.22205 0.96332 0.88334 1.00778 1.21571 0.93728 1.01013 0.98097 1.22542 0.94702 0.93253 1.00299 0.85455 1.22876 0.96419 0.96454 0.99120 1.22339 0.84100 0.97181 0.99566 1.47295 1.22365 1.32658 1.33769 1.15598 0.82844 0.79458 0.79993 1.90722 1.23625 1.69478 1.67341 1.45142 1.25077 1.36184 1.31618 1.18844 0.91944 0.84359 0.91477 1.21267 1.07022 1.17009 1.12933 0.92564 1.25558 1.00756 0.96681 0.94186 1.69978 1.40198 1.27266 1.19545 0.85850 0.79977 0.78385 0.79614 1.19080 1.19503 1.18702 1.21231 0.93611 0.92270 0.87655 0.91209 1.22033 0.95322 0.99731 0.91346 0.91332 0.93624 0.94367 0.93532 0.90886 0.88651 0.93187 0.89002 0.87640 0.91541 0.92166 0.76758 0.97514 0.97839 0.91813 0.93334 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 9.60 127.69 1.23 2.14 16 2 N -0.55 -15.64 4.95 -926.50 -4.59 -20.23 16 3 C 0.05 1.03 5.46 86.19 0.47 1.50 16 4 C -0.11 -1.85 5.11 30.54 0.16 -1.69 16 5 C -0.09 -1.39 3.74 -9.37 -0.04 -1.43 16 6 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 7 C -0.11 -1.53 6.33 32.15 0.20 -1.33 16 8 C 0.09 2.07 5.41 86.72 0.47 2.54 16 9 N -0.62 -19.49 3.10 -810.32 -2.51 -22.00 16 10 C 0.72 30.61 8.33 179.06 1.49 32.10 16 11 O -0.63 -30.99 13.88 -4.01 -0.06 -31.05 16 12 N -0.73 -32.78 5.51 -482.28 -2.66 -35.43 16 13 C 0.26 13.67 4.50 85.63 0.38 14.05 16 14 C -0.54 -31.57 9.83 25.60 0.25 -31.32 16 15 H 0.06 3.42 7.84 -2.91 -0.02 3.40 16 16 C 0.03 1.66 5.47 84.65 0.46 2.13 16 17 N -0.93 -56.95 13.96 21.45 0.30 -56.66 16 18 Si 0.94 45.88 27.47 68.60 1.88 47.77 16 19 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.26 -12.88 6.54 99.48 0.65 -12.23 16 22 C 0.16 3.90 3.02 44.74 0.14 4.04 16 23 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 24 C 0.04 1.25 4.26 85.77 0.37 1.61 16 25 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.04 1.40 8.05 -2.38 -0.02 1.38 16 27 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.05 0.78 8.11 -2.38 -0.02 0.76 16 29 H 0.07 1.43 8.11 -2.39 -0.02 1.41 16 30 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.05 1.15 6.71 -2.38 -0.02 1.14 16 32 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.11 1.03 8.02 -2.38 -0.02 1.01 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.06 1.44 7.70 -2.39 -0.02 1.42 16 36 H 0.40 16.28 7.33 -92.71 -0.68 15.60 16 37 H 0.01 0.39 7.20 -2.39 -0.02 0.37 16 38 H 0.00 0.21 7.57 -2.39 -0.02 0.19 16 39 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 40 H 0.05 1.13 8.12 -2.39 -0.02 1.11 16 41 H 0.07 2.66 5.61 -2.39 -0.01 2.65 16 Total: -1.00 -73.38 316.36 -1.77 -75.15 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.28 Total: 18.11 kcal Atomic # 6 Polarization: 18.76 SS G_CDS: 5.58 Total: 24.34 kcal Atomic # 7 Polarization: -124.87 SS G_CDS: -9.46 Total: -134.32 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -0.06 Total: -31.05 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.88 Total: 47.77 kcal Total: -73.38 -1.77 -75.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336364214.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.247 kcal (2) G-P(sol) polarization free energy of solvation -73.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds