Wall clock time and date at job start Mon Mar 30 2020 04:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46348 * 110.99975 * 2 1 4 4 C 1.53785 * 111.83258 * 181.60254 * 3 2 1 5 5 C 1.51870 * 107.00635 * 303.01117 * 4 3 2 6 6 H 1.08997 * 111.61813 * 300.96468 * 5 4 3 7 7 C 1.53577 * 115.67196 * 172.54886 * 5 4 3 8 8 C 1.55408 * 101.73559 * 206.88849 * 7 5 4 9 9 N 1.48297 * 107.00907 * 22.52695 * 8 7 5 10 10 C 1.34775 * 126.50407 * 185.36766 * 9 8 7 11 11 O 1.21585 * 119.99866 * 179.97438 * 10 9 8 12 12 N 1.34771 * 119.99982 * 359.97438 * 10 9 8 13 13 C 1.46501 * 119.99891 * 179.97438 * 12 10 9 14 14 C 1.50707 * 109.47007 * 180.02562 * 13 12 10 15 15 H 1.07997 * 119.99653 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99860 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99765 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 119.99806 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47483 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47281 * 120.00158 * 18 16 14 21 21 H 1.48503 * 109.47286 * 239.99823 * 18 16 14 22 22 C 1.45200 * 106.99404 * 5.34745 * 9 8 7 23 23 H 1.09008 * 109.08399 * 84.19295 * 22 9 8 24 24 C 1.47732 * 110.99707 * 127.24848 * 2 1 3 25 25 H 1.09000 * 109.47209 * 292.75515 * 1 2 3 26 26 H 1.09001 * 109.47577 * 52.75157 * 1 2 3 27 27 H 1.09000 * 109.47611 * 172.75148 * 1 2 3 28 28 H 1.08994 * 109.00518 * 302.21118 * 3 2 1 29 29 H 1.09000 * 109.00083 * 60.99841 * 3 2 1 30 30 H 1.08992 * 109.95043 * 62.38268 * 4 3 2 31 31 H 1.09003 * 109.94488 * 183.55615 * 4 3 2 32 32 H 1.09002 * 110.98284 * 88.76505 * 7 5 4 33 33 H 1.09001 * 110.97990 * 325.00956 * 7 5 4 34 34 H 1.09003 * 109.92453 * 141.86388 * 8 7 5 35 35 H 1.09004 * 109.92560 * 263.18382 * 8 7 5 36 36 H 0.97002 * 119.99933 * 359.97438 * 12 10 9 37 37 H 1.08998 * 109.46967 * 299.99542 * 13 12 10 38 38 H 1.09000 * 109.47330 * 59.99826 * 13 12 10 39 39 H 0.96998 * 119.99507 * 180.02562 * 17 16 14 40 40 H 1.08994 * 109.91657 * 56.27659 * 24 2 1 41 41 H 1.09004 * 109.97457 * 295.14787 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9935 1.3663 0.0000 4 6 3.5306 1.3888 -0.0399 5 6 4.0178 0.5921 1.1577 6 1 3.6547 1.0135 2.0950 7 6 5.5308 0.3348 1.2147 8 6 5.5966 -0.9829 2.0360 9 7 4.2768 -1.6454 1.8998 10 6 3.8714 -2.7631 2.5345 11 8 2.7570 -3.2058 2.3338 12 7 4.7013 -3.3899 3.3916 13 6 4.2604 -4.6045 4.0820 14 6 5.3662 -5.1036 4.9760 15 1 6.3037 -4.5697 5.0247 16 6 5.1813 -6.2425 5.7310 17 7 4.0398 -6.8929 5.6712 18 14 6.5521 -6.8615 6.8386 19 1 7.7252 -5.9578 6.7268 20 1 6.0787 -6.8854 8.2460 21 1 6.9421 -8.2332 6.4242 22 6 3.5040 -0.8611 0.9532 23 1 3.7596 -1.1721 -0.0598 24 6 1.9984 -0.8348 1.0979 25 1 -0.3633 0.3975 0.9477 26 1 -0.3634 0.6220 -0.8180 27 1 -0.3634 -1.0194 -0.1297 28 1 1.6078 1.8945 -0.8719 29 1 1.6542 1.8767 0.9014 30 1 3.8855 0.9285 -0.9619 31 1 3.8892 2.4162 0.0246 32 1 6.0450 1.1440 1.7333 33 1 5.9404 0.1922 0.2147 34 1 6.3794 -1.6293 1.6391 35 1 5.7929 -0.7579 3.0843 36 1 5.5905 -3.0368 3.5514 37 1 3.3799 -4.3808 4.6842 38 1 4.0130 -5.3706 3.3471 39 1 3.9096 -7.6938 6.2026 40 1 1.6002 -1.8465 1.0202 41 1 1.7253 -0.4014 2.0601 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336364215.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:16 Heat of formation + Delta-G solvation = -21.253157 kcal Electronic energy + Delta-G solvation = -21062.033518 eV Core-core repulsion = 17976.700983 eV Total energy + Delta-G solvation = -3085.332535 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.55005 -38.36613 -36.40141 -34.13875 -32.93938 -32.22257 -30.34549 -29.66173 -26.95355 -26.11621 -23.59894 -23.07970 -21.93018 -21.50774 -20.17282 -19.18762 -17.61812 -16.12722 -15.94863 -15.49210 -15.25582 -14.92057 -14.70478 -14.42511 -14.25243 -13.79277 -13.51910 -12.98974 -12.82780 -12.65832 -12.43973 -12.08169 -11.99186 -11.89460 -11.55500 -11.50878 -11.29319 -10.90226 -10.89040 -10.84113 -10.71594 -10.29430 -10.20453 -9.32930 -9.21655 -8.71000 -8.36489 -8.28255 -7.68666 -6.13507 -4.19766 3.10360 3.25254 3.32433 3.35741 3.90194 3.96085 4.26365 4.36131 4.49796 4.68469 4.86476 5.00291 5.09985 5.17852 5.22716 5.24860 5.34176 5.39444 5.44306 5.50237 5.62072 5.66594 5.70298 5.77637 5.82775 5.86993 5.91049 6.08241 6.21819 6.30113 6.60025 6.98961 7.07712 7.29544 7.55125 7.59973 7.64790 7.92707 8.06124 8.79121 8.94137 9.36643 9.51427 10.96863 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.033247 B = 0.004171 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.979539 B = 6711.493405 C = 7441.442900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.554 5.554 3 C 0.059 3.941 4 C -0.102 4.102 5 C -0.115 4.115 6 H 0.081 0.919 7 C -0.120 4.120 8 C 0.103 3.897 9 N -0.638 5.638 10 C 0.712 3.288 11 O -0.595 6.595 12 N -0.727 5.727 13 C 0.267 3.733 14 C -0.540 4.540 15 H 0.062 0.938 16 C 0.063 3.937 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.159 3.841 23 H 0.070 0.930 24 C 0.064 3.936 25 H 0.023 0.977 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.028 0.972 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.386 0.614 37 H 0.024 0.976 38 H 0.025 0.975 39 H 0.265 0.735 40 H 0.103 0.897 41 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.611 18.453 -10.860 21.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.280 5.280 3 C -0.069 4.069 4 C -0.141 4.141 5 C -0.134 4.134 6 H 0.099 0.901 7 C -0.158 4.158 8 C -0.020 4.020 9 N -0.379 5.379 10 C 0.414 3.586 11 O -0.474 6.474 12 N -0.378 5.378 13 C 0.146 3.854 14 C -0.579 4.579 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.208 1.208 22 C 0.053 3.947 23 H 0.087 0.913 24 C -0.064 4.064 25 H 0.042 0.958 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.046 0.954 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.218 0.782 37 H 0.042 0.958 38 H 0.043 0.957 39 H 0.075 0.925 40 H 0.121 0.879 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -0.199 17.593 -11.257 20.887 hybrid contribution 0.871 0.112 1.555 1.786 sum 0.672 17.705 -9.701 20.200 Atomic orbital electron populations 1.22255 0.86637 1.02647 0.99972 1.61164 1.07738 1.12467 1.46628 1.22026 0.95253 0.89240 1.00410 1.21445 0.94529 1.00051 0.98032 1.22354 0.95686 0.96180 0.99221 0.90056 1.22463 0.95986 0.96537 1.00790 1.22349 0.85735 0.93610 1.00288 1.47309 1.15681 1.26909 1.47962 1.15700 0.84692 0.78885 0.79299 1.90837 1.20325 1.67293 1.68902 1.45728 1.16718 1.30294 1.45105 1.18990 0.95636 0.79670 0.91135 1.21262 1.00195 1.10778 1.25655 0.91959 1.24943 0.96002 0.96231 0.96847 1.69992 1.23697 1.18181 1.40423 0.86362 0.81623 0.78742 0.80170 1.19670 1.20831 1.20798 1.20919 0.92052 0.89012 0.92673 0.91262 1.22003 0.94068 0.99212 0.91100 0.95792 0.91603 0.91022 0.90839 0.95425 0.90575 0.90900 0.90230 0.90398 0.91464 0.91501 0.78192 0.95776 0.95703 0.92539 0.87875 0.94686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.63 60.06 0.58 0.94 16 2 N -0.55 -6.95 4.80 -243.24 -1.17 -8.12 16 3 C 0.06 0.58 5.41 -3.72 -0.02 0.56 16 4 C -0.10 -0.91 5.75 -26.90 -0.15 -1.06 16 5 C -0.11 -1.24 2.70 -89.58 -0.24 -1.48 16 6 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 7 C -0.12 -1.12 6.56 -25.15 -0.17 -1.28 16 8 C 0.10 1.28 6.32 -1.77 -0.01 1.27 16 9 N -0.64 -10.70 3.28 -169.28 -0.56 -11.25 16 10 C 0.71 15.57 8.44 -86.92 -0.73 14.84 16 11 O -0.59 -15.14 14.56 5.29 0.08 -15.06 16 12 N -0.73 -16.33 5.52 -66.41 -0.37 -16.69 16 13 C 0.27 7.31 5.43 -5.19 -0.03 7.28 16 14 C -0.54 -14.96 9.28 -34.44 -0.32 -15.28 16 15 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 18 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C 0.16 2.33 2.59 -68.18 -0.18 2.15 16 23 H 0.07 1.05 7.91 -51.92 -0.41 0.64 16 24 C 0.06 0.98 4.62 -4.23 -0.02 0.96 16 25 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 29 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.68 7.99 -51.93 -0.41 0.27 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.65 8.13 -51.93 -0.42 0.23 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 36 H 0.39 7.58 7.34 -40.82 -0.30 7.28 16 37 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.02 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.10 1.93 6.62 -51.93 -0.34 1.59 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 324.06 15.07 4.88 4.88 Total: -1.00 -32.57 324.06 -9.71 -42.29 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.91 Total: 3.02 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: -1.39 Total: 10.59 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: -1.35 Total: -61.75 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.08 Total: -15.06 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.57 -9.71 -42.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336364215.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.033 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds