Wall clock time and date at job start Mon Mar 30 2020 04:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46348 * 110.99975 * 2 1 4 4 C 1.53785 * 111.83258 * 181.60254 * 3 2 1 5 5 C 1.51870 * 107.00635 * 303.01117 * 4 3 2 6 6 H 1.08997 * 111.61813 * 300.96468 * 5 4 3 7 7 C 1.53577 * 115.67196 * 172.54886 * 5 4 3 8 8 C 1.55408 * 101.73559 * 206.88849 * 7 5 4 9 9 N 1.48297 * 107.00907 * 22.52695 * 8 7 5 10 10 C 1.34775 * 126.50407 * 185.36766 * 9 8 7 11 11 O 1.21585 * 119.99866 * 179.97438 * 10 9 8 12 12 N 1.34771 * 119.99982 * 359.97438 * 10 9 8 13 13 C 1.46501 * 119.99891 * 179.97438 * 12 10 9 14 14 C 1.50707 * 109.47007 * 180.02562 * 13 12 10 15 15 H 1.07997 * 119.99653 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99860 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99765 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 119.99806 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47483 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47281 * 120.00158 * 18 16 14 21 21 H 1.48503 * 109.47286 * 239.99823 * 18 16 14 22 22 C 1.45200 * 106.99404 * 5.34745 * 9 8 7 23 23 H 1.09008 * 109.08399 * 84.19295 * 22 9 8 24 24 C 1.47732 * 110.99707 * 127.24848 * 2 1 3 25 25 H 1.09000 * 109.47209 * 292.75515 * 1 2 3 26 26 H 1.09001 * 109.47577 * 52.75157 * 1 2 3 27 27 H 1.09000 * 109.47611 * 172.75148 * 1 2 3 28 28 H 1.08994 * 109.00518 * 302.21118 * 3 2 1 29 29 H 1.09000 * 109.00083 * 60.99841 * 3 2 1 30 30 H 1.08992 * 109.95043 * 62.38268 * 4 3 2 31 31 H 1.09003 * 109.94488 * 183.55615 * 4 3 2 32 32 H 1.09002 * 110.98284 * 88.76505 * 7 5 4 33 33 H 1.09001 * 110.97990 * 325.00956 * 7 5 4 34 34 H 1.09003 * 109.92453 * 141.86388 * 8 7 5 35 35 H 1.09004 * 109.92560 * 263.18382 * 8 7 5 36 36 H 0.97002 * 119.99933 * 359.97438 * 12 10 9 37 37 H 1.08998 * 109.46967 * 299.99542 * 13 12 10 38 38 H 1.09000 * 109.47330 * 59.99826 * 13 12 10 39 39 H 0.96998 * 119.99507 * 180.02562 * 17 16 14 40 40 H 1.08994 * 109.91657 * 56.27659 * 24 2 1 41 41 H 1.09004 * 109.97457 * 295.14787 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9935 1.3663 0.0000 4 6 3.5306 1.3888 -0.0399 5 6 4.0178 0.5921 1.1577 6 1 3.6547 1.0135 2.0950 7 6 5.5308 0.3348 1.2147 8 6 5.5966 -0.9829 2.0360 9 7 4.2768 -1.6454 1.8998 10 6 3.8714 -2.7631 2.5345 11 8 2.7570 -3.2058 2.3338 12 7 4.7013 -3.3899 3.3916 13 6 4.2604 -4.6045 4.0820 14 6 5.3662 -5.1036 4.9760 15 1 6.3037 -4.5697 5.0247 16 6 5.1813 -6.2425 5.7310 17 7 4.0398 -6.8929 5.6712 18 14 6.5521 -6.8615 6.8386 19 1 7.7252 -5.9578 6.7268 20 1 6.0787 -6.8854 8.2460 21 1 6.9421 -8.2332 6.4242 22 6 3.5040 -0.8611 0.9532 23 1 3.7596 -1.1721 -0.0598 24 6 1.9984 -0.8348 1.0979 25 1 -0.3633 0.3975 0.9477 26 1 -0.3634 0.6220 -0.8180 27 1 -0.3634 -1.0194 -0.1297 28 1 1.6078 1.8945 -0.8719 29 1 1.6542 1.8767 0.9014 30 1 3.8855 0.9285 -0.9619 31 1 3.8892 2.4162 0.0246 32 1 6.0450 1.1440 1.7333 33 1 5.9404 0.1922 0.2147 34 1 6.3794 -1.6293 1.6391 35 1 5.7929 -0.7579 3.0843 36 1 5.5905 -3.0368 3.5514 37 1 3.3799 -4.3808 4.6842 38 1 4.0130 -5.3706 3.3471 39 1 3.9096 -7.6938 6.2026 40 1 1.6002 -1.8465 1.0202 41 1 1.7253 -0.4014 2.0601 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336364215.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:16 Heat of formation + Delta-G solvation = -45.666117 kcal Electronic energy + Delta-G solvation = -21063.092143 eV Core-core repulsion = 17976.700983 eV Total energy + Delta-G solvation = -3086.391160 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.78768 -39.86705 -37.54841 -36.16221 -34.46356 -33.83916 -31.38898 -30.88343 -28.93091 -27.07450 -25.26993 -24.06779 -23.64317 -22.45232 -21.17241 -20.87360 -19.19157 -17.94318 -17.46242 -16.88021 -16.59775 -16.28317 -15.93459 -15.73807 -15.52208 -15.15958 -14.71240 -14.50008 -14.17248 -13.99835 -13.82647 -13.55805 -13.29690 -12.98283 -12.91709 -12.82135 -12.73491 -12.46560 -12.21635 -12.13816 -11.67524 -11.58903 -11.45508 -11.33669 -10.87389 -10.82534 -10.04198 -9.39946 -9.32591 -8.29546 -6.46447 1.42571 1.44720 1.57577 1.69539 2.19158 2.37710 2.87405 3.05410 3.17100 3.46673 3.68283 3.81752 4.07230 4.09131 4.18323 4.31353 4.42231 4.46983 4.52732 4.64417 4.71244 4.72119 4.92752 4.94722 4.95699 4.96696 5.01709 5.10726 5.10839 5.20566 5.24553 5.36468 5.45661 5.51561 5.71080 5.83546 5.95994 6.16121 6.27730 6.65365 7.16476 7.23910 7.69904 8.83261 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.033247 B = 0.004171 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.979539 B = 6711.493405 C = 7441.442900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.560 5.560 3 C 0.053 3.947 4 C -0.095 4.095 5 C -0.101 4.101 6 H 0.074 0.926 7 C -0.104 4.104 8 C 0.090 3.910 9 N -0.634 5.634 10 C 0.705 3.295 11 O -0.642 6.642 12 N -0.721 5.721 13 C 0.287 3.713 14 C -0.554 4.554 15 H 0.083 0.917 16 C 0.004 3.996 17 N -0.931 5.931 18 Si 0.988 3.012 19 H -0.252 1.252 20 H -0.278 1.278 21 H -0.278 1.278 22 C 0.145 3.855 23 H 0.067 0.933 24 C 0.072 3.928 25 H 0.021 0.979 26 H 0.094 0.906 27 H 0.057 0.943 28 H 0.097 0.903 29 H 0.027 0.973 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.402 0.598 37 H -0.016 1.016 38 H -0.016 1.016 39 H 0.269 0.731 40 H 0.058 0.942 41 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.443 21.199 -11.357 24.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.286 5.286 3 C -0.075 4.075 4 C -0.133 4.133 5 C -0.120 4.120 6 H 0.093 0.907 7 C -0.141 4.141 8 C -0.031 4.031 9 N -0.373 5.373 10 C 0.407 3.593 11 O -0.524 6.524 12 N -0.375 5.375 13 C 0.164 3.836 14 C -0.592 4.592 15 H 0.101 0.899 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.811 3.189 19 H -0.176 1.176 20 H -0.204 1.204 21 H -0.203 1.203 22 C 0.040 3.960 23 H 0.085 0.915 24 C -0.056 4.056 25 H 0.040 0.960 26 H 0.112 0.888 27 H 0.076 0.924 28 H 0.115 0.885 29 H 0.045 0.955 30 H 0.099 0.901 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.237 0.763 37 H 0.002 0.998 38 H 0.002 0.998 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 2.679 20.428 -11.796 23.741 hybrid contribution -0.107 -0.695 1.628 1.774 sum 2.571 19.733 -10.167 22.347 Atomic orbital electron populations 1.22320 0.85963 1.02448 1.00952 1.61210 1.08573 1.14067 1.44721 1.22221 0.96388 0.87384 1.01462 1.21482 0.93354 1.01531 0.96927 1.22338 0.96678 0.92970 1.00042 0.90748 1.22493 0.94839 0.95244 1.01557 1.22758 0.83334 0.95258 1.01755 1.47328 1.17949 1.25291 1.46725 1.15896 0.83962 0.80050 0.79392 1.90807 1.22329 1.69031 1.70263 1.45317 1.17582 1.29249 1.45317 1.18411 0.94807 0.80498 0.89906 1.21607 1.00640 1.11330 1.25640 0.89913 1.26090 0.98829 0.96240 0.98410 1.70158 1.26396 1.18833 1.41593 0.85063 0.78226 0.78221 0.77389 1.17572 1.20371 1.20344 1.21207 0.91417 0.91620 0.91803 0.91494 1.21720 0.95070 0.97455 0.91348 0.96028 0.88765 0.92450 0.88462 0.95470 0.90116 0.87535 0.87071 0.88627 0.90476 0.90797 0.76299 0.99827 0.99778 0.92204 0.92361 0.96608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 9.63 127.69 1.23 1.91 16 2 N -0.56 -13.88 4.80 -923.48 -4.44 -18.32 16 3 C 0.05 0.91 5.41 86.67 0.47 1.38 16 4 C -0.10 -1.31 5.75 30.49 0.18 -1.14 16 5 C -0.10 -1.90 2.70 -10.12 -0.03 -1.93 16 6 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 7 C -0.10 -1.50 6.56 31.62 0.21 -1.29 16 8 C 0.09 2.04 6.32 86.86 0.55 2.59 16 9 N -0.63 -21.45 3.28 -807.74 -2.65 -24.10 16 10 C 0.71 32.41 8.44 179.06 1.51 33.92 16 11 O -0.64 -35.35 14.56 -3.98 -0.06 -35.41 16 12 N -0.72 -33.63 5.52 -482.30 -2.66 -36.29 16 13 C 0.29 16.64 5.43 85.64 0.46 17.11 16 14 C -0.55 -31.12 9.28 25.60 0.24 -30.89 16 15 H 0.08 4.21 7.60 -2.91 -0.02 4.19 16 16 C 0.00 0.22 5.46 84.66 0.46 0.68 16 17 N -0.93 -57.36 13.29 21.45 0.28 -57.08 16 18 Si 0.99 42.94 29.54 68.60 2.03 44.97 16 19 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 20 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 22 C 0.14 4.22 2.59 45.53 0.12 4.33 16 23 H 0.07 2.00 7.91 -2.38 -0.02 1.98 16 24 C 0.07 2.36 4.62 85.58 0.40 2.76 16 25 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.09 1.51 8.07 -2.39 -0.02 1.49 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 28 H 0.10 1.27 8.09 -2.39 -0.02 1.25 16 29 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.08 1.11 7.99 -2.39 -0.02 1.09 16 31 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.10 1.12 8.13 -2.39 -0.02 1.10 16 34 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 1.58 8.10 -2.39 -0.02 1.57 16 36 H 0.40 15.79 7.34 -92.71 -0.68 15.11 16 37 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 38 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 39 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 40 H 0.06 2.41 6.62 -2.39 -0.02 2.39 16 41 H 0.02 0.55 8.14 -2.38 -0.02 0.53 16 Total: -1.00 -76.61 324.06 -1.38 -77.99 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.32 Total: 18.82 kcal Atomic # 6 Polarization: 23.63 SS G_CDS: 5.79 Total: 29.42 kcal Atomic # 7 Polarization: -126.32 SS G_CDS: -9.46 Total: -135.79 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -0.06 Total: -35.41 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -76.61 -1.38 -77.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336364215.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.320 kcal (2) G-P(sol) polarization free energy of solvation -76.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds