Wall clock time and date at job start Mon Mar 30 2020 04:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46444 * 110.99822 * 2 1 4 4 C 1.54390 * 109.64368 * 173.61062 * 3 2 1 5 5 C 1.53000 * 108.42877 * 62.41034 * 4 3 2 6 6 H 1.09002 * 111.45549 * 72.33869 * 5 4 3 7 7 C 1.55113 * 107.63247 * 195.06147 * 5 4 3 8 8 C 1.53969 * 103.97388 * 88.16533 * 7 5 4 9 9 N 1.47066 * 107.67324 * 17.74956 * 8 7 5 10 10 C 1.34775 * 125.75817 * 182.07963 * 9 8 7 11 11 O 1.21588 * 119.99759 * 175.54570 * 10 9 8 12 12 N 1.34777 * 120.00055 * 355.54470 * 10 9 8 13 13 C 1.46500 * 120.00112 * 180.02562 * 12 10 9 14 14 C 1.50695 * 109.46957 * 180.02562 * 13 12 10 15 15 H 1.07994 * 120.00307 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99922 * 179.97438 * 14 13 12 17 17 N 1.31523 * 119.99955 * 0.27876 * 16 14 13 18 18 Si 1.86798 * 120.00337 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46899 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47165 * 120.00469 * 18 16 14 21 21 H 1.48497 * 109.47468 * 240.00579 * 18 16 14 22 22 C 1.46501 * 108.48027 * 2.33790 * 9 8 7 23 23 H 1.08997 * 107.36851 * 93.08567 * 22 9 8 24 24 C 1.45331 * 111.00298 * 233.53266 * 2 1 3 25 25 H 1.09002 * 109.46899 * 186.46425 * 1 2 3 26 26 H 1.08994 * 109.47420 * 306.46823 * 1 2 3 27 27 H 1.09000 * 109.46727 * 66.46549 * 1 2 3 28 28 H 1.09003 * 109.57728 * 293.38942 * 3 2 1 29 29 H 1.08994 * 109.57624 * 53.65085 * 3 2 1 30 30 H 1.09001 * 109.31779 * 303.08646 * 4 3 2 31 31 H 1.09002 * 110.53065 * 182.44966 * 4 3 2 32 32 H 1.09005 * 110.52618 * 329.54616 * 7 5 4 33 33 H 1.08997 * 110.53021 * 206.79186 * 7 5 4 34 34 H 1.09003 * 109.81586 * 258.21256 * 8 7 5 35 35 H 1.08998 * 109.87842 * 137.32468 * 8 7 5 36 36 H 0.96999 * 119.99721 * 0.02562 * 12 10 9 37 37 H 1.09002 * 109.46922 * 59.99876 * 13 12 10 38 38 H 1.09005 * 109.46687 * 300.00010 * 13 12 10 39 39 H 0.97000 * 119.99710 * 359.72632 * 17 16 14 40 40 H 1.09002 * 108.38705 * 53.69192 * 24 2 1 41 41 H 1.09001 * 108.38974 * 296.52668 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9938 1.3672 0.0000 4 6 3.5288 1.3339 0.1618 5 6 4.1262 0.6006 -1.0408 6 1 4.0678 1.2054 -1.9458 7 6 5.5927 0.2380 -0.6890 8 6 5.4807 -1.1317 0.0052 9 7 4.1663 -1.6977 -0.3334 10 6 3.6744 -2.8698 0.1147 11 8 2.5391 -3.2005 -0.1682 12 7 4.4410 -3.6753 0.8763 13 6 3.9066 -4.9496 1.3628 14 6 4.9555 -5.6531 2.1848 15 1 5.9233 -5.1966 2.3305 16 6 4.6793 -6.8793 2.7516 17 7 3.5023 -7.4374 2.5704 18 14 5.9798 -7.7518 3.7699 19 1 7.2108 -6.9225 3.8163 20 1 5.4711 -7.9596 5.1495 21 1 6.2911 -9.0666 3.1539 22 6 3.4843 -0.7755 -1.2448 23 1 3.7098 -1.0968 -2.2616 24 6 1.9899 -0.8064 -1.0911 25 1 -0.3633 -1.0212 0.1157 26 1 -0.3634 0.6108 0.8264 27 1 -0.3633 0.4104 -0.9422 28 1 1.7440 1.8543 -0.9426 29 1 1.5564 1.9262 0.8271 30 1 3.7834 0.7996 1.0771 31 1 3.9305 2.3462 0.2071 32 1 6.0168 0.9774 -0.0096 33 1 6.1948 0.1597 -1.5943 34 1 5.5621 -1.0065 1.0850 35 1 6.2706 -1.7932 -0.3505 36 1 5.3466 -3.4112 1.1022 37 1 3.6294 -5.5751 0.5142 38 1 3.0271 -4.7630 1.9793 39 1 2.8271 -6.9845 2.0412 40 1 1.5414 -0.4573 -2.0212 41 1 1.6819 -1.8399 -0.9324 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336364216.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:20 Heat of formation + Delta-G solvation = -46.228836 kcal Electronic energy + Delta-G solvation = -21463.060450 eV Core-core repulsion = 18376.644889 eV Total energy + Delta-G solvation = -3086.415561 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.89029 -39.73894 -37.57679 -36.43361 -34.54656 -33.81073 -31.54724 -30.78361 -28.49007 -27.16468 -25.25018 -24.35855 -24.00748 -22.67990 -21.27708 -20.39082 -19.20771 -18.26562 -17.56525 -16.99050 -16.44918 -16.10664 -15.74568 -15.72328 -15.52359 -15.29976 -14.83182 -14.46789 -14.28324 -14.15421 -13.82339 -13.54247 -13.20944 -13.14946 -13.02080 -12.84341 -12.58367 -12.53424 -12.49532 -11.86523 -11.71944 -11.64857 -11.13837 -10.93290 -10.77127 -10.57957 -10.08796 -9.40279 -9.11024 -8.80004 -6.54653 1.55218 1.66092 1.70548 1.82362 2.18111 2.55132 2.96533 3.08914 3.12878 3.57739 3.59943 3.76480 4.07107 4.14559 4.23578 4.28229 4.38814 4.48777 4.53620 4.57775 4.64609 4.69847 4.75574 4.82969 4.89992 4.92042 4.98298 5.00975 5.06063 5.16931 5.20612 5.35841 5.46481 5.55963 5.68726 6.09594 6.14024 6.16062 6.34095 6.36941 7.10942 7.30073 7.67496 8.59507 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.027157 B = 0.004747 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.806837 B = 5897.215793 C = 6501.013907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.567 5.567 3 C 0.055 3.945 4 C -0.104 4.104 5 C -0.089 4.089 6 H 0.121 0.879 7 C -0.110 4.110 8 C 0.090 3.910 9 N -0.625 5.625 10 C 0.711 3.289 11 O -0.632 6.632 12 N -0.721 5.721 13 C 0.276 3.724 14 C -0.627 4.627 15 H 0.073 0.927 16 C -0.032 4.032 17 N -0.930 5.930 18 Si 1.137 2.863 19 H -0.260 1.260 20 H -0.279 1.279 21 H -0.278 1.278 22 C 0.160 3.840 23 H 0.059 0.941 24 C 0.031 3.969 25 H 0.043 0.957 26 H 0.080 0.920 27 H 0.035 0.965 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.401 0.599 37 H -0.020 1.020 38 H -0.022 1.022 39 H 0.254 0.746 40 H 0.032 0.968 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.006 22.458 -7.245 24.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.292 5.292 3 C -0.072 4.072 4 C -0.142 4.142 5 C -0.108 4.108 6 H 0.139 0.861 7 C -0.147 4.147 8 C -0.032 4.032 9 N -0.363 5.363 10 C 0.413 3.587 11 O -0.515 6.515 12 N -0.374 5.374 13 C 0.152 3.848 14 C -0.664 4.664 15 H 0.091 0.909 16 C -0.230 4.230 17 N -0.566 5.566 18 Si 0.956 3.044 19 H -0.184 1.184 20 H -0.204 1.204 21 H -0.204 1.204 22 C 0.056 3.944 23 H 0.077 0.923 24 C -0.097 4.097 25 H 0.062 0.938 26 H 0.099 0.901 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.113 0.887 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.236 0.764 37 H -0.002 1.002 38 H -0.004 1.004 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.618 20.568 -6.147 21.958 hybrid contribution -0.991 1.191 -1.583 2.215 sum 3.628 21.758 -7.730 23.374 Atomic orbital electron populations 1.22224 0.86358 1.01421 1.00982 1.60423 1.08131 1.14014 1.46666 1.22282 0.96255 0.87785 1.00890 1.21885 0.93713 1.01386 0.97185 1.22124 0.95006 0.93135 1.00567 0.86125 1.22630 0.95969 0.94133 1.02004 1.22187 0.83766 0.96749 1.00487 1.47238 1.19496 1.18433 1.51114 1.15803 0.83759 0.80068 0.79021 1.90634 1.19634 1.75875 1.65353 1.45192 1.17122 1.20953 1.54151 1.18495 0.94099 0.80268 0.91919 1.22434 1.00995 1.07467 1.35540 0.90876 1.27683 1.01407 0.95958 0.97969 1.70843 1.05688 1.41177 1.38859 0.82717 0.72179 0.75047 0.74492 1.18423 1.20436 1.20382 1.20764 0.91451 0.90217 0.91934 0.92281 1.21774 0.94996 1.01234 0.91685 0.93773 0.90124 0.94701 0.93973 0.90218 0.93255 0.87635 0.87400 0.88690 0.92003 0.91082 0.76427 1.00166 1.00410 0.93717 0.94988 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.99 9.57 127.69 1.22 2.21 16 2 N -0.57 -16.58 4.87 -930.47 -4.54 -21.12 16 3 C 0.06 1.12 5.49 86.86 0.48 1.60 16 4 C -0.10 -1.80 5.36 31.07 0.17 -1.63 16 5 C -0.09 -1.51 3.33 -10.00 -0.03 -1.55 16 6 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 7 C -0.11 -1.55 6.32 31.65 0.20 -1.35 16 8 C 0.09 2.10 5.88 86.60 0.51 2.61 16 9 N -0.62 -20.71 3.28 -816.97 -2.68 -23.39 16 10 C 0.71 32.29 8.35 179.05 1.50 33.79 16 11 O -0.63 -33.78 13.56 -3.99 -0.05 -33.84 16 12 N -0.72 -33.94 5.51 -482.29 -2.66 -36.60 16 13 C 0.28 15.97 4.74 85.63 0.41 16.37 16 14 C -0.63 -35.84 9.28 25.60 0.24 -35.60 16 15 H 0.07 3.87 7.60 -2.91 -0.02 3.84 16 16 C -0.03 -1.84 5.46 84.65 0.46 -1.38 16 17 N -0.93 -59.13 13.65 21.45 0.29 -58.83 16 18 Si 1.14 49.24 29.90 68.60 2.05 51.29 16 19 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 20 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 22 C 0.16 4.40 2.98 44.18 0.13 4.53 16 23 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 24 C 0.03 0.99 4.82 85.72 0.41 1.41 16 25 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.08 1.78 8.05 -2.39 -0.02 1.77 16 27 H 0.03 0.78 8.12 -2.39 -0.02 0.76 16 28 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.08 1.47 8.05 -2.39 -0.02 1.46 16 30 H 0.05 1.12 7.77 -2.39 -0.02 1.10 16 31 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.11 1.05 7.85 -2.38 -0.02 1.03 16 33 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.40 16.32 7.32 -92.71 -0.68 15.65 16 37 H -0.02 -1.24 8.00 -2.39 -0.02 -1.26 16 38 H -0.02 -1.41 8.01 -2.38 -0.02 -1.43 16 39 H 0.25 16.83 7.22 -92.71 -0.67 16.16 16 40 H 0.03 0.91 8.06 -2.39 -0.02 0.89 16 41 H 0.09 3.75 4.65 -5.65 -0.03 3.72 16 Total: -1.00 -77.50 319.52 -1.48 -78.97 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.42 Total: 22.50 kcal Atomic # 6 Polarization: 15.32 SS G_CDS: 5.69 Total: 21.01 kcal Atomic # 7 Polarization: -130.35 SS G_CDS: -9.58 Total: -139.93 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -0.05 Total: -33.84 kcal Atomic # 14 Polarization: 49.24 SS G_CDS: 2.05 Total: 51.29 kcal Total: -77.50 -1.48 -78.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336364216.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.745 kcal (2) G-P(sol) polarization free energy of solvation -77.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds