Wall clock time and date at job start Mon Mar 30 2020 04:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46347 * 111.00112 * 2 1 4 4 C 1.53781 * 111.83707 * 178.39447 * 3 2 1 5 5 C 1.51963 * 106.99220 * 56.99554 * 4 3 2 6 6 H 1.09002 * 111.07616 * 58.70333 * 5 4 3 7 7 C 1.53571 * 115.63065 * 187.45336 * 5 4 3 8 8 C 1.55406 * 101.70496 * 153.12558 * 7 5 4 9 9 N 1.48304 * 107.00660 * 337.45285 * 8 7 5 10 10 C 1.34771 * 126.50664 * 174.67231 * 9 8 7 11 11 O 1.21581 * 120.00391 * 179.97438 * 10 9 8 12 12 N 1.34783 * 119.99709 * 359.97430 * 10 9 8 13 13 C 1.46498 * 120.00170 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.47165 * 180.02562 * 13 12 10 15 15 H 1.07996 * 119.99805 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99872 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99872 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99772 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47497 * 90.00044 * 18 16 14 20 20 H 1.48499 * 109.46775 * 209.99704 * 18 16 14 21 21 H 1.48497 * 109.47278 * 329.99323 * 18 16 14 22 22 C 1.45204 * 106.99270 * 354.65028 * 9 8 7 23 23 H 1.08999 * 108.41351 * 275.19992 * 22 9 8 24 24 C 1.47726 * 111.00154 * 232.75818 * 2 1 3 25 25 H 1.08992 * 109.46824 * 187.24907 * 1 2 3 26 26 H 1.09000 * 109.46980 * 307.24439 * 1 2 3 27 27 H 1.08996 * 109.47048 * 67.24109 * 1 2 3 28 28 H 1.08996 * 109.01058 * 299.00764 * 3 2 1 29 29 H 1.09002 * 109.00609 * 57.79363 * 3 2 1 30 30 H 1.09003 * 109.95290 * 297.62474 * 4 3 2 31 31 H 1.08997 * 110.02261 * 176.40520 * 4 3 2 32 32 H 1.09002 * 110.97783 * 271.22968 * 7 5 4 33 33 H 1.08995 * 110.97950 * 34.97870 * 7 5 4 34 34 H 1.08997 * 109.92259 * 96.79124 * 8 7 5 35 35 H 1.09003 * 109.92430 * 218.11750 * 8 7 5 36 36 H 0.97006 * 119.99595 * 359.97438 * 12 10 9 37 37 H 1.09003 * 109.46490 * 299.99785 * 13 12 10 38 38 H 1.08995 * 109.47446 * 59.99586 * 13 12 10 39 39 H 0.97001 * 119.99784 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.90751 * 303.72009 * 24 2 1 41 41 H 1.09000 * 109.91203 * 64.87957 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9935 1.3663 0.0000 4 6 3.5306 1.3889 0.0400 5 6 4.0178 0.5917 -1.1585 6 1 3.6449 1.0172 -2.0902 7 6 5.5308 0.3348 -1.2148 8 6 5.5966 -0.9826 -2.0365 9 7 4.2767 -1.6451 -1.9003 10 6 3.8714 -2.7629 -2.5346 11 8 2.7573 -3.2062 -2.3334 12 7 4.7012 -3.3895 -3.3922 13 6 4.2606 -4.6044 -4.0822 14 6 5.3666 -5.1038 -4.9759 15 1 6.3037 -4.5694 -5.0252 16 6 5.1819 -6.2429 -5.7305 17 7 6.1468 -6.6784 -6.5107 18 14 3.5605 -7.1667 -5.6456 19 1 2.6326 -6.6338 -6.6752 20 1 3.8001 -8.6108 -5.8951 21 1 2.9600 -6.9900 -4.2990 22 6 3.5041 -0.8610 -0.9534 23 1 3.7599 -1.1882 0.0543 24 6 1.9984 -0.8346 -1.0979 25 1 -0.3633 -1.0194 0.1297 26 1 -0.3633 0.6220 0.8181 27 1 -0.3633 0.3975 -0.9476 28 1 1.6542 1.8768 -0.9012 29 1 1.6079 1.8945 0.8720 30 1 3.8855 0.9285 0.9621 31 1 3.8905 2.4157 -0.0251 32 1 6.0450 1.1442 -1.7332 33 1 5.9400 0.1926 -0.2147 34 1 5.7927 -0.7572 -3.0847 35 1 6.3794 -1.6292 -1.6398 36 1 5.5900 -3.0356 -3.5530 37 1 4.0140 -5.3705 -3.3471 38 1 3.3796 -4.3813 -4.6839 39 1 6.0167 -7.4795 -7.0418 40 1 1.6003 -1.8463 -1.0202 41 1 1.7253 -0.4000 -2.0595 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336364217.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:24 Heat of formation + Delta-G solvation = -17.693639 kcal Electronic energy + Delta-G solvation = -21121.741891 eV Core-core repulsion = 18036.563708 eV Total energy + Delta-G solvation = -3085.178182 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.62863 -38.49450 -36.48143 -34.26105 -33.00568 -32.27303 -30.41163 -29.82419 -27.52904 -26.17294 -23.56108 -23.12168 -21.63260 -21.56413 -20.22675 -19.37675 -17.69944 -16.34892 -16.18104 -15.57272 -15.31503 -14.97893 -14.62810 -14.51639 -14.31911 -13.83785 -13.60280 -13.10435 -12.88565 -12.75122 -12.50214 -12.31740 -12.24104 -12.06344 -11.72055 -11.57623 -11.34679 -10.94961 -10.87884 -10.77367 -10.73498 -10.29971 -9.93131 -9.47292 -9.35223 -8.75281 -8.47393 -8.36707 -7.91748 -6.18835 -4.20486 3.00266 3.29545 3.36340 3.45560 3.78238 3.87142 4.21810 4.36383 4.44917 4.63783 4.76236 4.92765 5.04730 5.12109 5.16938 5.19807 5.28219 5.33906 5.39381 5.44834 5.57248 5.61945 5.66796 5.73699 5.77203 5.82172 5.86777 6.03401 6.13479 6.25110 6.49513 6.81484 6.95932 7.03712 7.14514 7.32740 7.44193 7.66599 8.28673 8.70185 8.82395 9.24176 9.43338 10.93206 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.029692 B = 0.004554 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.787759 B = 6146.512191 C = 6983.837179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.554 5.554 3 C 0.059 3.941 4 C -0.103 4.103 5 C -0.114 4.114 6 H 0.082 0.918 7 C -0.119 4.119 8 C 0.102 3.898 9 N -0.637 5.637 10 C 0.714 3.286 11 O -0.598 6.598 12 N -0.720 5.720 13 C 0.239 3.761 14 C -0.542 4.542 15 H 0.078 0.922 16 C 0.078 3.922 17 N -0.894 5.894 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.260 1.260 22 C 0.158 3.842 23 H 0.071 0.929 24 C 0.063 3.937 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.024 0.976 28 H 0.028 0.972 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.392 0.608 37 H 0.023 0.977 38 H 0.018 0.982 39 H 0.267 0.733 40 H 0.102 0.898 41 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.387 18.237 13.089 22.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.280 5.280 3 C -0.069 4.069 4 C -0.141 4.141 5 C -0.133 4.133 6 H 0.100 0.900 7 C -0.157 4.157 8 C -0.021 4.021 9 N -0.377 5.377 10 C 0.416 3.584 11 O -0.477 6.477 12 N -0.372 5.372 13 C 0.116 3.884 14 C -0.580 4.580 15 H 0.096 0.904 16 C -0.126 4.126 17 N -0.531 5.531 18 Si 0.703 3.297 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.184 1.184 22 C 0.053 3.947 23 H 0.089 0.911 24 C -0.064 4.064 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.042 0.958 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.225 0.775 37 H 0.041 0.959 38 H 0.036 0.964 39 H 0.077 0.923 40 H 0.121 0.879 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.033 17.401 13.431 22.551 hybrid contribution -0.523 -0.024 -1.030 1.155 sum -5.556 17.378 12.402 22.060 Atomic orbital electron populations 1.22253 0.86628 1.02614 1.00009 1.61156 1.07735 1.12527 1.46571 1.22029 0.95280 0.89175 1.00459 1.21477 0.94483 1.00124 0.98055 1.22352 0.95712 0.95942 0.99299 0.89987 1.22454 0.95881 0.96532 1.00844 1.22383 0.85540 0.93685 1.00477 1.47283 1.15844 1.26717 1.47877 1.15656 0.84544 0.78973 0.79208 1.90827 1.20391 1.67447 1.69065 1.45409 1.17138 1.29692 1.44972 1.19361 0.96015 0.81330 0.91704 1.21091 1.00712 1.11307 1.24844 0.90352 1.24773 0.96876 0.96591 0.94333 1.69880 1.32557 1.23803 1.26871 0.86813 0.83957 0.79147 0.79767 1.19885 1.20927 1.18410 1.20961 0.92050 0.89122 0.92590 0.91131 1.22007 0.94066 0.99180 0.91158 0.91069 0.91555 0.95790 0.95395 0.90795 0.90562 0.90826 0.90116 0.90310 0.91321 0.91275 0.77484 0.95881 0.96414 0.92293 0.87950 0.94688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.63 60.06 0.58 0.92 16 2 N -0.55 -6.64 4.80 -243.26 -1.17 -7.81 16 3 C 0.06 0.55 5.41 -3.72 -0.02 0.53 16 4 C -0.10 -0.87 5.76 -26.85 -0.15 -1.03 16 5 C -0.11 -1.18 2.70 -89.55 -0.24 -1.42 16 6 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 7 C -0.12 -1.07 6.56 -25.16 -0.17 -1.23 16 8 C 0.10 1.23 6.32 -1.77 -0.01 1.22 16 9 N -0.64 -10.27 3.28 -169.30 -0.56 -10.82 16 10 C 0.71 14.91 8.44 -86.92 -0.73 14.18 16 11 O -0.60 -14.39 14.56 5.29 0.08 -14.31 16 12 N -0.72 -15.58 5.52 -66.42 -0.37 -15.95 16 13 C 0.24 6.08 4.50 -5.19 -0.02 6.06 16 14 C -0.54 -15.15 9.83 -34.44 -0.34 -15.48 16 15 H 0.08 2.28 7.84 -52.49 -0.41 1.86 16 16 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 17 N -0.89 -26.78 13.96 55.43 0.77 -26.01 16 18 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 19 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 22 C 0.16 2.22 2.57 -68.20 -0.18 2.04 16 23 H 0.07 1.03 7.96 -51.93 -0.41 0.61 16 24 C 0.06 0.93 4.62 -4.24 -0.02 0.91 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 27 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 30 H 0.08 0.65 8.02 -51.93 -0.42 0.24 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.63 8.13 -51.93 -0.42 0.21 16 34 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.39 7.59 7.34 -40.82 -0.30 7.29 16 37 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 38 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.10 1.82 6.62 -51.93 -0.34 1.48 16 41 H 0.03 0.55 8.13 -51.93 -0.42 0.12 16 LS Contribution 320.51 15.07 4.83 4.83 Total: -1.00 -32.53 320.51 -9.36 -41.89 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.88 Total: 2.24 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: -1.40 Total: 8.83 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -1.32 Total: -60.59 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.08 Total: -14.31 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.53 -9.36 -41.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336364217.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.195 kcal (2) G-P(sol) polarization free energy of solvation -32.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds