Wall clock time and date at job start Mon Mar 30 2020 04:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46347 * 111.00112 * 2 1 4 4 C 1.53781 * 111.83707 * 178.39447 * 3 2 1 5 5 C 1.51963 * 106.99220 * 56.99554 * 4 3 2 6 6 H 1.09002 * 111.07616 * 58.70333 * 5 4 3 7 7 C 1.53571 * 115.63065 * 187.45336 * 5 4 3 8 8 C 1.55406 * 101.70496 * 153.12558 * 7 5 4 9 9 N 1.48304 * 107.00660 * 337.45285 * 8 7 5 10 10 C 1.34771 * 126.50664 * 174.67231 * 9 8 7 11 11 O 1.21581 * 120.00391 * 179.97438 * 10 9 8 12 12 N 1.34783 * 119.99709 * 359.97430 * 10 9 8 13 13 C 1.46498 * 120.00170 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.47165 * 180.02562 * 13 12 10 15 15 H 1.07996 * 119.99805 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99872 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99872 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99772 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47497 * 90.00044 * 18 16 14 20 20 H 1.48499 * 109.46775 * 209.99704 * 18 16 14 21 21 H 1.48497 * 109.47278 * 329.99323 * 18 16 14 22 22 C 1.45204 * 106.99270 * 354.65028 * 9 8 7 23 23 H 1.08999 * 108.41351 * 275.19992 * 22 9 8 24 24 C 1.47726 * 111.00154 * 232.75818 * 2 1 3 25 25 H 1.08992 * 109.46824 * 187.24907 * 1 2 3 26 26 H 1.09000 * 109.46980 * 307.24439 * 1 2 3 27 27 H 1.08996 * 109.47048 * 67.24109 * 1 2 3 28 28 H 1.08996 * 109.01058 * 299.00764 * 3 2 1 29 29 H 1.09002 * 109.00609 * 57.79363 * 3 2 1 30 30 H 1.09003 * 109.95290 * 297.62474 * 4 3 2 31 31 H 1.08997 * 110.02261 * 176.40520 * 4 3 2 32 32 H 1.09002 * 110.97783 * 271.22968 * 7 5 4 33 33 H 1.08995 * 110.97950 * 34.97870 * 7 5 4 34 34 H 1.08997 * 109.92259 * 96.79124 * 8 7 5 35 35 H 1.09003 * 109.92430 * 218.11750 * 8 7 5 36 36 H 0.97006 * 119.99595 * 359.97438 * 12 10 9 37 37 H 1.09003 * 109.46490 * 299.99785 * 13 12 10 38 38 H 1.08995 * 109.47446 * 59.99586 * 13 12 10 39 39 H 0.97001 * 119.99784 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.90751 * 303.72009 * 24 2 1 41 41 H 1.09000 * 109.91203 * 64.87957 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9935 1.3663 0.0000 4 6 3.5306 1.3889 0.0400 5 6 4.0178 0.5917 -1.1585 6 1 3.6449 1.0172 -2.0902 7 6 5.5308 0.3348 -1.2148 8 6 5.5966 -0.9826 -2.0365 9 7 4.2767 -1.6451 -1.9003 10 6 3.8714 -2.7629 -2.5346 11 8 2.7573 -3.2062 -2.3334 12 7 4.7012 -3.3895 -3.3922 13 6 4.2606 -4.6044 -4.0822 14 6 5.3666 -5.1038 -4.9759 15 1 6.3037 -4.5694 -5.0252 16 6 5.1819 -6.2429 -5.7305 17 7 6.1468 -6.6784 -6.5107 18 14 3.5605 -7.1667 -5.6456 19 1 2.6326 -6.6338 -6.6752 20 1 3.8001 -8.6108 -5.8951 21 1 2.9600 -6.9900 -4.2990 22 6 3.5041 -0.8610 -0.9534 23 1 3.7599 -1.1882 0.0543 24 6 1.9984 -0.8346 -1.0979 25 1 -0.3633 -1.0194 0.1297 26 1 -0.3633 0.6220 0.8181 27 1 -0.3633 0.3975 -0.9476 28 1 1.6542 1.8768 -0.9012 29 1 1.6079 1.8945 0.8720 30 1 3.8855 0.9285 0.9621 31 1 3.8905 2.4157 -0.0251 32 1 6.0450 1.1442 -1.7332 33 1 5.9400 0.1926 -0.2147 34 1 5.7927 -0.7572 -3.0847 35 1 6.3794 -1.6292 -1.6398 36 1 5.5900 -3.0356 -3.5530 37 1 4.0140 -5.3705 -3.3471 38 1 3.3796 -4.3813 -4.6839 39 1 6.0167 -7.4795 -7.0418 40 1 1.6003 -1.8463 -1.0202 41 1 1.7253 -0.4000 -2.0595 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336364217.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:24 Heat of formation + Delta-G solvation = -41.934146 kcal Electronic energy + Delta-G solvation = -21122.793038 eV Core-core repulsion = 18036.563708 eV Total energy + Delta-G solvation = -3086.229330 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.80842 -39.90054 -37.55954 -36.18503 -34.49733 -33.89764 -31.41604 -31.03750 -29.36750 -27.07232 -25.03115 -24.06222 -23.40862 -22.45896 -21.21940 -20.94209 -19.27455 -18.24796 -17.47859 -16.88796 -16.54219 -16.28661 -15.94412 -15.75456 -15.58736 -15.19921 -14.80172 -14.59312 -14.33583 -14.19850 -13.89771 -13.56661 -13.30598 -13.06861 -12.95745 -12.86352 -12.70377 -12.46603 -12.14435 -11.93899 -11.67697 -11.67053 -11.60357 -11.35469 -10.93015 -10.89682 -10.12283 -9.44617 -9.31951 -8.41211 -6.48081 1.31976 1.33706 1.47652 1.65490 2.14915 2.27656 2.85632 2.94254 3.13097 3.44395 3.67130 3.81517 4.06759 4.09174 4.18487 4.30470 4.41076 4.47660 4.52901 4.62379 4.69725 4.71417 4.75574 4.92771 4.95222 4.96104 4.96791 5.02177 5.08651 5.10153 5.19619 5.22638 5.37488 5.47116 5.53205 5.92258 6.06998 6.17658 6.25505 6.53190 7.07252 7.17686 7.62950 8.73583 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.029692 B = 0.004554 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.787759 B = 6146.512191 C = 6983.837179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.560 5.560 3 C 0.053 3.947 4 C -0.096 4.096 5 C -0.100 4.100 6 H 0.075 0.925 7 C -0.104 4.104 8 C 0.090 3.910 9 N -0.634 5.634 10 C 0.709 3.291 11 O -0.637 6.637 12 N -0.720 5.720 13 C 0.253 3.747 14 C -0.546 4.546 15 H 0.059 0.941 16 C 0.030 3.970 17 N -0.930 5.930 18 Si 0.937 3.063 19 H -0.265 1.265 20 H -0.270 1.270 21 H -0.263 1.263 22 C 0.146 3.854 23 H 0.068 0.932 24 C 0.072 3.928 25 H 0.058 0.942 26 H 0.092 0.908 27 H 0.021 0.979 28 H 0.027 0.973 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.402 0.598 37 H 0.009 0.991 38 H 0.008 0.992 39 H 0.273 0.727 40 H 0.062 0.938 41 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.229 20.487 14.436 25.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.286 5.286 3 C -0.074 4.074 4 C -0.134 4.134 5 C -0.120 4.120 6 H 0.093 0.907 7 C -0.142 4.142 8 C -0.031 4.031 9 N -0.373 5.373 10 C 0.411 3.589 11 O -0.519 6.519 12 N -0.374 5.374 13 C 0.129 3.871 14 C -0.584 4.584 15 H 0.077 0.923 16 C -0.171 4.171 17 N -0.568 5.568 18 Si 0.761 3.239 19 H -0.190 1.190 20 H -0.195 1.195 21 H -0.187 1.187 22 C 0.041 3.959 23 H 0.086 0.914 24 C -0.056 4.056 25 H 0.077 0.923 26 H 0.111 0.889 27 H 0.040 0.960 28 H 0.046 0.954 29 H 0.114 0.886 30 H 0.098 0.902 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.237 0.763 37 H 0.027 0.973 38 H 0.026 0.974 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -4.839 19.716 14.805 25.126 hybrid contribution -0.544 -0.650 -1.405 1.641 sum -5.383 19.066 13.401 23.918 Atomic orbital electron populations 1.22315 0.85907 1.02504 1.00927 1.61202 1.08592 1.14000 1.44818 1.22208 0.96283 0.87484 1.01446 1.21508 0.93435 1.01489 0.96965 1.22335 0.96506 0.93039 1.00100 0.90652 1.22479 0.94950 0.95204 1.01527 1.22746 0.83415 0.95296 1.01691 1.47337 1.17871 1.25289 1.46757 1.15794 0.83874 0.80020 0.79250 1.90799 1.21962 1.68936 1.70233 1.45136 1.17854 1.29010 1.45374 1.18942 0.94741 0.82466 0.90941 1.21242 1.00595 1.11335 1.25226 0.92326 1.25546 1.00098 0.97486 0.93953 1.69971 1.34456 1.24631 1.27768 0.85867 0.79950 0.78482 0.79650 1.18955 1.19514 1.18734 1.21232 0.91559 0.91468 0.91676 0.91437 1.21739 0.94844 0.97623 0.91396 0.92277 0.88939 0.95991 0.95448 0.88559 0.90154 0.87690 0.87245 0.88615 0.90946 0.90597 0.76267 0.97298 0.97450 0.91754 0.91956 0.96449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 9.63 127.69 1.23 1.86 16 2 N -0.56 -12.92 4.80 -923.53 -4.44 -17.35 16 3 C 0.05 0.85 5.41 86.67 0.47 1.32 16 4 C -0.10 -1.25 5.76 30.52 0.18 -1.07 16 5 C -0.10 -1.80 2.70 -10.10 -0.03 -1.83 16 6 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 7 C -0.10 -1.47 6.56 31.61 0.21 -1.27 16 8 C 0.09 2.00 6.32 86.86 0.55 2.55 16 9 N -0.63 -20.30 3.28 -807.82 -2.65 -22.95 16 10 C 0.71 30.26 8.44 179.05 1.51 31.77 16 11 O -0.64 -31.89 14.56 -3.97 -0.06 -31.95 16 12 N -0.72 -31.76 5.52 -482.30 -2.66 -34.42 16 13 C 0.25 13.17 4.50 85.63 0.38 13.55 16 14 C -0.55 -31.09 9.83 25.60 0.25 -30.84 16 15 H 0.06 3.49 7.84 -2.91 -0.02 3.47 16 16 C 0.03 1.71 5.47 84.66 0.46 2.17 16 17 N -0.93 -56.15 13.96 21.45 0.30 -55.85 16 18 Si 0.94 45.17 27.47 68.60 1.88 47.06 16 19 H -0.26 -12.33 7.11 99.48 0.71 -11.63 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.26 -12.74 6.54 99.48 0.65 -12.09 16 22 C 0.15 3.98 2.57 45.51 0.12 4.10 16 23 H 0.07 1.91 7.96 -2.39 -0.02 1.89 16 24 C 0.07 2.19 4.62 85.58 0.40 2.58 16 25 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.09 1.35 8.07 -2.39 -0.02 1.33 16 27 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.10 1.17 8.09 -2.39 -0.02 1.15 16 30 H 0.08 1.04 8.02 -2.39 -0.02 1.03 16 31 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.10 1.10 8.13 -2.39 -0.02 1.09 16 34 H 0.07 1.57 8.10 -2.39 -0.02 1.55 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.40 15.77 7.34 -92.70 -0.68 15.08 16 37 H 0.01 0.50 7.20 -2.39 -0.02 0.48 16 38 H 0.01 0.41 7.57 -2.39 -0.02 0.39 16 39 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 40 H 0.06 2.37 6.62 -2.39 -0.02 2.36 16 41 H 0.02 0.57 8.13 -2.39 -0.02 0.55 16 Total: -1.00 -72.41 320.51 -1.63 -74.04 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.27 Total: 16.53 kcal Atomic # 6 Polarization: 19.17 SS G_CDS: 5.73 Total: 24.90 kcal Atomic # 7 Polarization: -121.13 SS G_CDS: -9.45 Total: -130.58 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -0.06 Total: -31.95 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.88 Total: 47.06 kcal Total: -72.41 -1.63 -74.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336364217.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.106 kcal (2) G-P(sol) polarization free energy of solvation -72.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds