Wall clock time and date at job start Mon Mar 30 2020 04:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.41613 * 2 1 4 4 C 1.53820 * 109.41585 * 240.20431 * 2 1 3 5 5 N 1.45352 * 108.50292 * 189.11153 * 4 2 1 6 6 C 1.46411 * 117.48573 * 185.46125 * 5 4 2 7 7 C 1.54754 * 106.02935 * 207.68318 * 6 5 4 8 8 C 1.55288 * 104.99992 * 3.52598 * 7 6 5 9 9 C 1.48725 * 110.02125 * 64.76950 * 5 4 2 10 10 H 1.09006 * 111.29006 * 52.53714 * 9 5 4 11 11 C 1.52665 * 107.79281 * 290.48311 * 9 5 4 12 12 N 1.46854 * 109.41714 * 119.86364 * 2 1 3 13 13 C 1.34777 * 120.21481 * 347.13649 * 12 2 1 14 14 O 1.21584 * 119.99976 * 354.35319 * 13 12 2 15 15 N 1.34779 * 119.99897 * 174.36316 * 13 12 2 16 16 C 1.46505 * 119.99725 * 185.11885 * 15 13 12 17 17 C 1.50698 * 109.46493 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00395 * 0.02562 * 17 16 15 19 19 C 1.37887 * 119.99597 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99736 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00019 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47041 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47119 * 120.00308 * 21 19 17 24 24 H 1.48506 * 109.46769 * 240.00128 * 21 19 17 25 25 H 1.09004 * 109.47110 * 310.24080 * 1 2 3 26 26 H 1.09006 * 109.47103 * 70.23420 * 1 2 3 27 27 H 1.08995 * 109.47067 * 190.23480 * 1 2 3 28 28 H 1.08992 * 109.78813 * 308.31461 * 4 2 1 29 29 H 1.09001 * 109.78746 * 69.09580 * 4 2 1 30 30 H 1.09007 * 110.14004 * 88.54599 * 6 5 4 31 31 H 1.08995 * 110.14127 * 326.82448 * 6 5 4 32 32 H 1.08993 * 110.33897 * 244.64027 * 7 6 5 33 33 H 1.09002 * 110.33344 * 122.40538 * 7 6 5 34 34 H 1.09001 * 110.86477 * 140.36172 * 8 7 6 35 35 H 1.09001 * 110.86630 * 263.82582 * 8 7 6 36 36 H 1.09002 * 110.00404 * 176.74829 * 11 9 5 37 37 H 1.08999 * 110.00082 * 298.15527 * 11 9 5 38 38 H 0.96992 * 119.99941 * 5.12251 * 15 13 12 39 39 H 1.09000 * 109.47136 * 299.99940 * 16 15 13 40 40 H 1.08994 * 109.46843 * 60.00101 * 16 15 13 41 41 H 0.97001 * 119.99380 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8924 1.0281 0.0000 4 6 2.0413 -0.7209 -1.2589 5 7 3.4782 -0.9017 -1.1354 6 6 4.1902 -1.4617 -2.2856 7 6 5.4311 -2.1849 -1.7094 8 6 5.2919 -2.0557 -0.1682 9 6 3.7811 -1.8116 0.0014 10 1 3.2206 -2.7432 -0.0772 11 6 3.4410 -1.0731 1.2935 12 7 2.0182 -0.6897 1.2011 13 6 1.1728 -0.9713 2.2123 14 8 0.0274 -0.5649 2.1781 15 7 1.5972 -1.7031 3.2615 16 6 0.6509 -2.1043 4.3054 17 6 1.3728 -2.9086 5.3556 18 1 2.4307 -3.1013 5.2556 19 6 0.6828 -3.3977 6.4446 20 7 -0.6054 -3.1626 6.5665 21 14 1.5778 -4.3941 7.7467 22 1 3.0111 -4.5164 7.3781 23 1 1.4604 -3.7111 9.0601 24 1 0.9730 -5.7474 7.8368 25 1 -0.3633 0.6639 0.7845 26 1 -0.3634 0.3476 -0.9672 27 1 -0.3633 -1.0113 0.1826 28 1 1.5643 -1.6971 -1.3445 29 1 1.8188 -0.1228 -2.1426 30 1 4.5005 -0.6634 -2.9600 31 1 3.5527 -2.1720 -2.8121 32 1 6.3451 -1.6981 -2.0493 33 1 5.4283 -3.2345 -2.0033 34 1 5.5942 -2.9781 0.3276 35 1 5.8694 -1.2095 0.2042 36 1 3.5956 -1.7294 2.1499 37 1 4.0619 -0.1822 1.3882 38 1 2.5292 -1.9642 3.3254 39 1 0.2163 -1.2155 4.7629 40 1 -0.1408 -2.7102 3.8647 41 1 -1.0909 -3.5069 7.3324 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336480520.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:06 Heat of formation + Delta-G solvation = -1.563781 kcal Electronic energy + Delta-G solvation = -21313.055262 eV Core-core repulsion = 18228.576523 eV Total energy + Delta-G solvation = -3084.478739 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.50462 -38.72408 -35.47858 -34.37142 -33.20859 -32.04242 -30.67403 -29.46261 -26.92059 -25.63673 -24.69588 -22.98414 -21.34150 -21.01975 -20.52618 -19.15713 -17.47674 -16.19664 -16.12775 -15.91341 -15.40370 -15.06788 -14.80827 -14.34439 -13.91593 -13.84261 -13.33817 -12.92624 -12.74809 -12.59241 -12.16260 -11.97856 -11.88852 -11.60021 -11.55578 -11.18057 -11.14089 -10.99497 -10.91231 -10.87638 -10.84378 -10.75472 -10.23689 -9.32399 -8.72537 -8.66481 -8.56141 -8.18421 -7.66864 -6.13674 -4.19877 3.15316 3.24926 3.32268 3.35401 3.76331 3.98783 4.31921 4.40471 4.49527 4.70178 4.74487 5.02560 5.08206 5.13494 5.22515 5.23859 5.29318 5.39231 5.51403 5.59154 5.63843 5.66424 5.71833 5.79302 5.85440 5.96686 6.01652 6.07566 6.48764 6.67217 6.76797 6.97950 7.12275 7.22364 7.55707 7.60526 7.61702 7.89571 8.05305 8.79279 8.94679 9.37465 9.52007 10.96639 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.023560 B = 0.004870 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.177677 B = 5748.680207 C = 6754.483687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.173 3.827 3 H 0.068 0.932 4 C 0.053 3.947 5 N -0.541 5.541 6 C 0.052 3.948 7 C -0.127 4.127 8 C -0.114 4.114 9 C 0.053 3.947 10 H 0.060 0.940 11 C 0.129 3.871 12 N -0.638 5.638 13 C 0.695 3.305 14 O -0.591 6.591 15 N -0.731 5.731 16 C 0.267 3.733 17 C -0.540 4.540 18 H 0.062 0.938 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.903 3.097 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.283 1.283 25 H 0.088 0.912 26 H 0.036 0.964 27 H 0.062 0.938 28 H 0.036 0.964 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.384 0.616 39 H 0.025 0.975 40 H 0.022 0.978 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.759 2.972 -16.688 20.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.068 3.932 3 H 0.086 0.914 4 C -0.076 4.076 5 N -0.266 5.266 6 C -0.075 4.075 7 C -0.165 4.165 8 C -0.153 4.153 9 C -0.056 4.056 10 H 0.078 0.922 11 C 0.005 3.995 12 N -0.378 5.378 13 C 0.397 3.603 14 O -0.471 6.471 15 N -0.386 5.386 16 C 0.146 3.854 17 C -0.579 4.579 18 H 0.080 0.920 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.730 3.270 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.209 1.209 25 H 0.107 0.893 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.218 0.782 39 H 0.043 0.957 40 H 0.040 0.960 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.863 3.700 -16.500 20.098 hybrid contribution 0.548 -1.538 0.509 1.711 sum 11.410 2.162 -15.991 19.763 Atomic orbital electron populations 1.22183 0.92406 1.04563 1.00257 1.21006 0.95279 0.94735 0.82172 0.91416 1.22399 0.86754 0.99798 0.98634 1.62445 1.11465 1.47715 1.04948 1.22483 0.94663 0.97501 0.92893 1.22596 0.97972 1.00225 0.95692 1.22359 0.94818 1.02376 0.95734 1.22983 0.96146 0.94418 0.92058 0.92204 1.21617 0.82337 0.99098 0.96401 1.47517 1.08361 1.63835 1.18088 1.16132 0.84413 0.79629 0.80138 1.90880 1.18281 1.58121 1.79774 1.45977 1.13473 1.55447 1.23684 1.18961 0.87848 0.95130 0.83505 1.21260 0.95653 1.34462 1.06487 0.92022 1.24941 0.94873 0.96181 0.98001 1.69994 1.07435 1.44877 1.29984 0.86376 0.79664 0.79692 0.81250 1.19668 1.20801 1.20852 0.89343 0.94506 0.91897 0.94601 0.89963 0.90515 0.94527 0.90924 0.91522 0.90700 0.90240 0.89721 0.90781 0.78161 0.95673 0.95956 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 7.63 37.16 0.28 -1.90 16 2 C 0.17 2.53 3.65 -67.31 -0.25 2.29 16 3 H 0.07 0.97 8.14 -51.92 -0.42 0.54 16 4 C 0.05 0.65 5.23 -4.23 -0.02 0.63 16 5 N -0.54 -6.19 4.64 -224.79 -1.04 -7.23 16 6 C 0.05 0.48 6.87 -3.17 -0.02 0.46 16 7 C -0.13 -1.01 6.98 -24.60 -0.17 -1.18 16 8 C -0.11 -1.03 6.59 -25.01 -0.16 -1.19 16 9 C 0.05 0.61 2.80 -66.36 -0.19 0.43 16 10 H 0.06 0.79 8.07 -51.93 -0.42 0.37 16 11 C 0.13 1.72 6.11 -3.58 -0.02 1.70 16 12 N -0.64 -10.59 3.03 -170.32 -0.52 -11.11 16 13 C 0.70 14.78 7.99 -86.92 -0.69 14.09 16 14 O -0.59 -14.43 12.07 5.29 0.06 -14.36 16 15 N -0.73 -16.12 5.46 -66.41 -0.36 -16.48 16 16 C 0.27 7.22 5.43 -5.19 -0.03 7.19 16 17 C -0.54 -14.81 9.28 -34.44 -0.32 -15.13 16 18 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 19 C 0.06 1.77 5.46 -17.81 -0.10 1.68 16 20 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 21 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H 0.09 1.64 6.45 -51.93 -0.33 1.31 16 26 H 0.04 0.47 8.11 -51.93 -0.42 0.05 16 27 H 0.06 1.16 7.06 -51.93 -0.37 0.79 16 28 H 0.04 0.48 8.04 -51.93 -0.42 0.06 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.34 8.05 -51.93 -0.42 -0.08 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.08 1.11 5.62 -51.93 -0.29 0.82 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.38 7.38 5.77 -40.82 -0.24 7.15 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 317.82 15.07 4.79 4.79 Total: -1.00 -31.62 317.82 -9.71 -41.32 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -6.66 Total: 3.64 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -1.69 Total: 9.06 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: -1.18 Total: -60.36 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.06 Total: -14.36 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.62 -9.71 -41.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336480520.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.758 kcal (2) G-P(sol) polarization free energy of solvation -31.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds