Wall clock time and date at job start Mon Mar 30 2020 04:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.41613 * 2 1 4 4 C 1.53820 * 109.41585 * 240.20431 * 2 1 3 5 5 N 1.45352 * 108.50292 * 189.11153 * 4 2 1 6 6 C 1.46411 * 117.48573 * 185.46125 * 5 4 2 7 7 C 1.54754 * 106.02935 * 207.68318 * 6 5 4 8 8 C 1.55288 * 104.99992 * 3.52598 * 7 6 5 9 9 C 1.48725 * 110.02125 * 64.76950 * 5 4 2 10 10 H 1.09006 * 111.29006 * 52.53714 * 9 5 4 11 11 C 1.52665 * 107.79281 * 290.48311 * 9 5 4 12 12 N 1.46854 * 109.41714 * 119.86364 * 2 1 3 13 13 C 1.34777 * 120.21481 * 347.13649 * 12 2 1 14 14 O 1.21584 * 119.99976 * 354.35319 * 13 12 2 15 15 N 1.34779 * 119.99897 * 174.36316 * 13 12 2 16 16 C 1.46505 * 119.99725 * 185.11885 * 15 13 12 17 17 C 1.50698 * 109.46493 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00395 * 0.02562 * 17 16 15 19 19 C 1.37887 * 119.99597 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99736 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00019 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47041 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47119 * 120.00308 * 21 19 17 24 24 H 1.48506 * 109.46769 * 240.00128 * 21 19 17 25 25 H 1.09004 * 109.47110 * 310.24080 * 1 2 3 26 26 H 1.09006 * 109.47103 * 70.23420 * 1 2 3 27 27 H 1.08995 * 109.47067 * 190.23480 * 1 2 3 28 28 H 1.08992 * 109.78813 * 308.31461 * 4 2 1 29 29 H 1.09001 * 109.78746 * 69.09580 * 4 2 1 30 30 H 1.09007 * 110.14004 * 88.54599 * 6 5 4 31 31 H 1.08995 * 110.14127 * 326.82448 * 6 5 4 32 32 H 1.08993 * 110.33897 * 244.64027 * 7 6 5 33 33 H 1.09002 * 110.33344 * 122.40538 * 7 6 5 34 34 H 1.09001 * 110.86477 * 140.36172 * 8 7 6 35 35 H 1.09001 * 110.86630 * 263.82582 * 8 7 6 36 36 H 1.09002 * 110.00404 * 176.74829 * 11 9 5 37 37 H 1.08999 * 110.00082 * 298.15527 * 11 9 5 38 38 H 0.96992 * 119.99941 * 5.12251 * 15 13 12 39 39 H 1.09000 * 109.47136 * 299.99940 * 16 15 13 40 40 H 1.08994 * 109.46843 * 60.00101 * 16 15 13 41 41 H 0.97001 * 119.99380 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8924 1.0281 0.0000 4 6 2.0413 -0.7209 -1.2589 5 7 3.4782 -0.9017 -1.1354 6 6 4.1902 -1.4617 -2.2856 7 6 5.4311 -2.1849 -1.7094 8 6 5.2919 -2.0557 -0.1682 9 6 3.7811 -1.8116 0.0014 10 1 3.2206 -2.7432 -0.0772 11 6 3.4410 -1.0731 1.2935 12 7 2.0182 -0.6897 1.2011 13 6 1.1728 -0.9713 2.2123 14 8 0.0274 -0.5649 2.1781 15 7 1.5972 -1.7031 3.2615 16 6 0.6509 -2.1043 4.3054 17 6 1.3728 -2.9086 5.3556 18 1 2.4307 -3.1013 5.2556 19 6 0.6828 -3.3977 6.4446 20 7 -0.6054 -3.1626 6.5665 21 14 1.5778 -4.3941 7.7467 22 1 3.0111 -4.5164 7.3781 23 1 1.4604 -3.7111 9.0601 24 1 0.9730 -5.7474 7.8368 25 1 -0.3633 0.6639 0.7845 26 1 -0.3634 0.3476 -0.9672 27 1 -0.3633 -1.0113 0.1826 28 1 1.5643 -1.6971 -1.3445 29 1 1.8188 -0.1228 -2.1426 30 1 4.5005 -0.6634 -2.9600 31 1 3.5527 -2.1720 -2.8121 32 1 6.3451 -1.6981 -2.0493 33 1 5.4283 -3.2345 -2.0033 34 1 5.5942 -2.9781 0.3276 35 1 5.8694 -1.2095 0.2042 36 1 3.5956 -1.7294 2.1499 37 1 4.0619 -0.1822 1.3882 38 1 2.5292 -1.9642 3.3254 39 1 0.2163 -1.2155 4.7629 40 1 -0.1408 -2.7102 3.8647 41 1 -1.0909 -3.5069 7.3324 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336480520.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:06 Heat of formation + Delta-G solvation = -24.140324 kcal Electronic energy + Delta-G solvation = -21314.034254 eV Core-core repulsion = 18228.576523 eV Total energy + Delta-G solvation = -3085.457732 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.79660 -40.00417 -36.88031 -36.12159 -34.84939 -33.65360 -31.68873 -30.65674 -28.88735 -26.68936 -25.80735 -24.86535 -22.78548 -21.79451 -21.64322 -20.72123 -19.09569 -17.90015 -17.53460 -17.02207 -16.79856 -16.41758 -16.25100 -15.62486 -15.28486 -15.25704 -14.61567 -14.49918 -14.06481 -13.85877 -13.71985 -13.38985 -13.31025 -12.97537 -12.82112 -12.73025 -12.41647 -12.30601 -12.18512 -12.03148 -11.97350 -11.90461 -11.45253 -11.42281 -10.80382 -10.34295 -9.97467 -9.55896 -9.20441 -8.28181 -6.44640 1.43359 1.45143 1.58123 1.73342 2.23320 2.38562 2.90131 3.06899 3.11434 3.58292 3.74060 3.81675 4.07572 4.15123 4.19785 4.21767 4.27145 4.47889 4.58079 4.64793 4.65324 4.74954 4.78605 4.90079 5.02115 5.05959 5.06568 5.16356 5.25236 5.28245 5.34172 5.35579 5.47730 5.70442 5.74586 5.85834 5.92051 6.08980 6.25553 6.67257 7.19223 7.25837 7.74385 8.84451 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.023560 B = 0.004870 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.177677 B = 5748.680207 C = 6754.483687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.167 3.833 3 H 0.080 0.920 4 C 0.063 3.937 5 N -0.544 5.544 6 C 0.050 3.950 7 C -0.122 4.122 8 C -0.109 4.109 9 C 0.053 3.947 10 H 0.041 0.959 11 C 0.125 3.875 12 N -0.630 5.630 13 C 0.689 3.311 14 O -0.630 6.630 15 N -0.727 5.727 16 C 0.288 3.712 17 C -0.554 4.554 18 H 0.082 0.918 19 C 0.005 3.995 20 N -0.931 5.931 21 Si 0.986 3.014 22 H -0.252 1.252 23 H -0.278 1.278 24 H -0.279 1.279 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.029 0.971 28 H 0.022 0.978 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.035 0.965 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.399 0.601 39 H -0.015 1.015 40 H -0.017 1.017 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.991 2.533 -17.758 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.064 3.936 3 H 0.098 0.902 4 C -0.066 4.066 5 N -0.269 5.269 6 C -0.078 4.078 7 C -0.160 4.160 8 C -0.147 4.147 9 C -0.056 4.056 10 H 0.059 0.941 11 C 0.002 3.998 12 N -0.369 5.369 13 C 0.391 3.609 14 O -0.512 6.512 15 N -0.383 5.383 16 C 0.164 3.836 17 C -0.591 4.591 18 H 0.100 0.900 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.809 3.191 22 H -0.176 1.176 23 H -0.204 1.204 24 H -0.204 1.204 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.048 0.952 28 H 0.040 0.960 29 H 0.126 0.874 30 H 0.109 0.891 31 H 0.054 0.946 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.236 0.764 39 H 0.003 0.997 40 H 0.001 0.999 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.169 3.273 -17.635 22.858 hybrid contribution -0.492 -1.330 0.746 1.602 sum 13.677 1.943 -16.890 21.820 Atomic orbital electron populations 1.21970 0.93692 1.01788 1.00975 1.21216 0.94348 0.95608 0.82471 0.90206 1.22255 0.87404 0.99126 0.97796 1.62470 1.10703 1.47864 1.05850 1.22603 0.94857 0.98073 0.92218 1.22606 0.98013 1.00743 0.94604 1.22367 0.92379 1.03197 0.96792 1.22931 0.98091 0.93322 0.91234 0.94060 1.21883 0.80157 1.00058 0.97686 1.47582 1.09281 1.62845 1.17175 1.16351 0.84494 0.79324 0.80734 1.90874 1.20300 1.59406 1.80665 1.45606 1.13468 1.56026 1.23244 1.18375 0.87976 0.92801 0.84407 1.21608 0.96588 1.34394 1.06555 0.90027 1.26062 0.95602 0.97213 1.00607 1.70156 1.09569 1.46161 1.31061 0.85097 0.79050 0.77494 0.77473 1.17578 1.20408 1.20428 0.92503 0.90965 0.95166 0.96022 0.87440 0.89133 0.94628 0.89212 0.90862 0.89778 0.89445 0.89751 0.89156 0.76355 0.99738 0.99908 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 7.63 71.98 0.55 -3.59 16 2 C 0.17 4.80 3.65 45.20 0.17 4.96 16 3 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 4 C 0.06 1.44 5.23 86.87 0.45 1.89 16 5 N -0.54 -11.04 4.64 -865.10 -4.01 -15.05 16 6 C 0.05 0.76 6.87 86.99 0.60 1.36 16 7 C -0.12 -1.51 6.98 31.98 0.22 -1.28 16 8 C -0.11 -1.61 6.59 31.71 0.21 -1.40 16 9 C 0.05 1.14 2.80 44.78 0.13 1.26 16 10 H 0.04 1.05 8.07 -2.38 -0.02 1.03 16 11 C 0.12 3.14 6.11 86.05 0.53 3.67 16 12 N -0.63 -20.97 3.03 -811.02 -2.46 -23.43 16 13 C 0.69 30.52 7.99 179.05 1.43 31.95 16 14 O -0.63 -32.76 12.07 -3.98 -0.05 -32.81 16 15 N -0.73 -33.17 5.46 -482.29 -2.63 -35.81 16 16 C 0.29 16.40 5.43 85.63 0.47 16.87 16 17 C -0.55 -30.74 9.28 25.60 0.24 -30.51 16 18 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 19 C 0.00 0.26 5.46 84.66 0.46 0.72 16 20 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 21 Si 0.99 42.64 29.54 68.60 2.03 44.67 16 22 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 23 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 25 H 0.06 2.22 6.45 -2.39 -0.02 2.20 16 26 H 0.07 1.81 8.11 -2.38 -0.02 1.79 16 27 H 0.03 1.16 7.06 -2.39 -0.02 1.14 16 28 H 0.02 0.56 8.04 -2.39 -0.02 0.54 16 29 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.04 0.56 8.05 -2.39 -0.02 0.54 16 32 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.09 1.19 8.10 -2.39 -0.02 1.17 16 36 H 0.08 2.11 5.62 -2.39 -0.01 2.10 16 37 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.40 15.42 5.77 -92.71 -0.53 14.88 16 39 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 40 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 41 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -72.01 317.82 -0.92 -72.93 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.48 Total: 20.21 kcal Atomic # 6 Polarization: 20.44 SS G_CDS: 5.45 Total: 25.89 kcal Atomic # 7 Polarization: -122.06 SS G_CDS: -8.82 Total: -130.88 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -0.05 Total: -32.81 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -72.01 -0.92 -72.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336480520.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.789 kcal (2) G-P(sol) polarization free energy of solvation -72.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds