Wall clock time and date at job start Mon Mar 30 2020 04:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.41510 * 2 1 4 4 C 1.53811 * 109.36268 * 119.83506 * 2 1 3 5 5 N 1.45352 * 108.50734 * 69.27985 * 4 2 1 6 6 C 1.46406 * 117.49227 * 185.45996 * 5 4 2 7 7 C 1.55312 * 106.08673 * 207.70829 * 6 5 4 8 8 C 1.55280 * 104.73593 * 3.48208 * 7 6 5 9 9 C 1.48737 * 110.01831 * 64.76683 * 5 4 2 10 10 H 1.08996 * 111.28818 * 52.54434 * 9 5 4 11 11 C 1.52658 * 107.79148 * 290.48254 * 9 5 4 12 12 N 1.46865 * 109.41230 * 240.13819 * 2 1 3 13 13 C 1.34779 * 120.21390 * 106.99566 * 12 2 1 14 14 O 1.21581 * 120.00103 * 174.70361 * 13 12 2 15 15 N 1.34777 * 120.00033 * 354.70805 * 13 12 2 16 16 C 1.46502 * 120.00057 * 184.95892 * 15 13 12 17 17 C 1.50697 * 109.47437 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99706 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.00062 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00407 * 359.97438 * 19 17 16 21 21 Si 1.86811 * 119.99977 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46917 * 60.00035 * 21 19 17 23 23 H 1.48496 * 109.46864 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46977 * 300.00128 * 21 19 17 25 25 H 1.09007 * 109.46782 * 179.86376 * 1 2 3 26 26 H 1.09005 * 109.47013 * 299.85616 * 1 2 3 27 27 H 1.09000 * 109.47502 * 59.86179 * 1 2 3 28 28 H 1.09009 * 109.79301 * 188.47799 * 4 2 1 29 29 H 1.08999 * 109.79088 * 309.26225 * 4 2 1 30 30 H 1.09000 * 110.14021 * 326.82516 * 6 5 4 31 31 H 1.08993 * 110.14309 * 88.47506 * 6 5 4 32 32 H 1.08998 * 110.50457 * 244.66250 * 7 6 5 33 33 H 1.09000 * 110.41894 * 122.26101 * 7 6 5 34 34 H 1.08996 * 110.86782 * 263.98996 * 8 7 6 35 35 H 1.08998 * 110.86607 * 140.51976 * 8 7 6 36 36 H 1.08998 * 110.00097 * 176.74816 * 11 9 5 37 37 H 1.08992 * 110.01001 * 298.15501 * 11 9 5 38 38 H 0.97001 * 120.00147 * 4.95515 * 15 13 12 39 39 H 1.09004 * 109.46614 * 299.99577 * 16 15 13 40 40 H 1.09000 * 109.47445 * 59.99420 * 16 15 13 41 41 H 0.97000 * 119.99981 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8923 1.0281 0.0000 4 6 2.0399 -0.7219 1.2588 5 7 1.7328 -2.1373 1.1353 6 6 2.0244 -2.9950 2.2853 7 6 2.2958 -4.4112 1.7082 8 6 2.2182 -4.2314 0.1678 9 6 2.4903 -2.7253 -0.0017 10 1 3.5552 -2.5064 0.0768 11 6 1.9066 -2.1591 -1.2937 12 7 2.0181 -0.6897 -1.2013 13 6 2.5646 0.0141 -2.2125 14 8 3.0544 -0.5663 -3.1619 15 7 2.5682 1.3612 -2.1712 16 6 3.0630 2.1279 -3.3173 17 6 2.9594 3.6013 -3.0185 18 1 2.5649 3.9335 -2.0696 19 6 3.3693 4.5253 -3.9561 20 7 3.8512 4.1209 -5.1111 21 14 3.2402 6.3519 -3.5861 22 1 4.0546 6.6726 -2.3865 23 1 3.7431 7.1289 -4.7473 24 1 1.8209 6.7059 -3.3300 25 1 -0.3633 -1.0277 -0.0024 26 1 -0.3633 0.5116 0.8913 27 1 -0.3634 0.5160 -0.8887 28 1 3.1194 -0.5967 1.3443 29 1 1.5499 -0.3134 2.1426 30 1 2.9062 -2.6299 2.8118 31 1 1.1690 -3.0214 2.9603 32 1 1.5341 -5.1137 2.0465 33 1 3.2874 -4.7571 1.9999 34 1 1.2271 -4.4912 -0.2040 35 1 2.9857 -4.8231 -0.3312 36 1 2.4742 -2.5229 -2.1501 37 1 0.8601 -2.4484 -1.3884 38 1 2.2431 1.8232 -1.3826 39 1 4.1045 1.8675 -3.5062 40 1 2.4644 1.8930 -4.1974 41 1 4.1392 4.7711 -5.7708 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336480521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:09 Heat of formation + Delta-G solvation = -38.524915 kcal Electronic energy + Delta-G solvation = -21231.445988 eV Core-core repulsion = 18145.364494 eV Total energy + Delta-G solvation = -3086.081494 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.72003 -40.01182 -36.95592 -36.24564 -34.35369 -33.85910 -31.52326 -30.70122 -29.01868 -27.08636 -25.75790 -24.30901 -23.30537 -21.94331 -21.53622 -20.39138 -19.23316 -18.08262 -17.37444 -16.73298 -16.70165 -16.47179 -16.29318 -15.71151 -15.28241 -15.09907 -14.84844 -14.37104 -14.15341 -14.01101 -13.69188 -13.34344 -13.18385 -12.96626 -12.86975 -12.67651 -12.39353 -12.24670 -12.15596 -11.98077 -11.88841 -11.82679 -11.49983 -11.46458 -11.12844 -10.79710 -10.10341 -9.56325 -9.18685 -8.28377 -6.45558 1.42911 1.47958 1.55756 1.71186 2.17768 2.38391 2.93289 3.06248 3.10291 3.60080 3.65463 3.85461 4.01917 4.15702 4.18284 4.22791 4.28772 4.60355 4.62598 4.62692 4.66985 4.77148 4.88528 4.92583 5.01814 5.03327 5.05840 5.07045 5.23228 5.25278 5.32658 5.41598 5.46289 5.55297 5.70866 5.83636 5.89408 6.09871 6.27768 6.65296 7.15252 7.24665 7.66511 8.83904 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.036456 B = 0.004221 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.860566 B = 6631.679281 C = 7059.054870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.136 3.864 3 H 0.084 0.916 4 C 0.062 3.938 5 N -0.537 5.537 6 C 0.051 3.949 7 C -0.120 4.120 8 C -0.109 4.109 9 C 0.056 3.944 10 H 0.038 0.962 11 C 0.146 3.854 12 N -0.625 5.625 13 C 0.691 3.309 14 O -0.648 6.648 15 N -0.724 5.724 16 C 0.286 3.714 17 C -0.556 4.556 18 H 0.082 0.918 19 C 0.005 3.995 20 N -0.931 5.931 21 Si 0.987 3.013 22 H -0.262 1.262 23 H -0.285 1.285 24 H -0.261 1.261 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.038 0.962 28 H 0.023 0.977 29 H 0.113 0.887 30 H 0.037 0.963 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.401 0.599 39 H -0.017 1.017 40 H -0.015 1.015 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.031 -13.429 18.999 24.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.033 3.967 3 H 0.102 0.898 4 C -0.067 4.067 5 N -0.262 5.262 6 C -0.077 4.077 7 C -0.158 4.158 8 C -0.148 4.148 9 C -0.053 4.053 10 H 0.056 0.944 11 C 0.023 3.977 12 N -0.362 5.362 13 C 0.392 3.608 14 O -0.531 6.531 15 N -0.379 5.379 16 C 0.163 3.837 17 C -0.594 4.594 18 H 0.100 0.900 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.810 3.190 22 H -0.186 1.186 23 H -0.210 1.210 24 H -0.185 1.185 25 H 0.088 0.912 26 H 0.107 0.893 27 H 0.057 0.943 28 H 0.042 0.958 29 H 0.131 0.869 30 H 0.055 0.945 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.238 0.762 39 H 0.001 0.999 40 H 0.002 0.998 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.137 -13.743 18.096 23.817 hybrid contribution 1.106 1.214 -0.143 1.649 sum -6.031 -12.529 17.953 22.708 Atomic orbital electron populations 1.21975 0.92939 1.03159 1.02139 1.21520 0.96256 0.95464 0.83507 0.89776 1.22204 0.98201 0.88472 0.97784 1.62450 1.56471 1.01790 1.05486 1.22686 1.00454 0.92353 0.92160 1.22689 1.02788 0.96173 0.94143 1.22342 1.03138 0.92223 0.97097 1.22892 0.94962 0.96227 0.91210 0.94400 1.21533 1.01471 0.77273 0.97429 1.47595 1.63839 1.07468 1.17331 1.16309 0.79127 0.82415 0.82912 1.90806 1.54401 1.70528 1.37365 1.45496 1.67743 1.03756 1.20914 1.18403 0.91837 0.90206 0.83226 1.21538 1.44332 0.90237 1.03306 0.89977 1.26074 0.93799 1.05354 0.94229 1.70142 1.42176 1.36866 1.07728 0.85181 0.79267 0.76680 0.77914 1.18641 1.20995 1.18530 0.91193 0.89303 0.94306 0.95836 0.86879 0.94507 0.88905 0.89154 0.90895 0.89722 0.90343 0.91153 0.89925 0.76178 0.99879 0.99751 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 9.26 71.98 0.67 -2.45 16 2 C 0.14 3.45 3.04 45.19 0.14 3.59 16 3 H 0.08 2.19 5.76 -2.38 -0.01 2.17 16 4 C 0.06 1.27 5.33 86.87 0.46 1.74 16 5 N -0.54 -10.40 4.24 -863.91 -3.66 -14.06 16 6 C 0.05 0.73 6.88 87.19 0.60 1.33 16 7 C -0.12 -1.50 7.02 32.17 0.23 -1.27 16 8 C -0.11 -1.78 6.58 31.71 0.21 -1.57 16 9 C 0.06 1.28 2.80 44.78 0.13 1.40 16 10 H 0.04 1.02 8.07 -2.39 -0.02 1.00 16 11 C 0.15 4.22 5.87 86.05 0.50 4.73 16 12 N -0.62 -21.00 2.68 -811.05 -2.17 -23.17 16 13 C 0.69 31.48 8.28 179.05 1.48 32.96 16 14 O -0.65 -35.58 15.77 -3.97 -0.06 -35.64 16 15 N -0.72 -33.61 5.44 -482.30 -2.62 -36.24 16 16 C 0.29 16.56 5.43 85.63 0.47 17.03 16 17 C -0.56 -31.15 9.28 25.60 0.24 -30.91 16 18 H 0.08 4.15 7.60 -2.91 -0.02 4.12 16 19 C 0.01 0.29 5.46 84.65 0.46 0.75 16 20 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 21 Si 0.99 42.77 29.54 68.60 2.03 44.80 16 22 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 23 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 24 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 25 H 0.07 1.52 7.50 -2.38 -0.02 1.50 16 26 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 27 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.02 0.55 8.05 -2.38 -0.02 0.53 16 29 H 0.11 1.70 8.13 -2.39 -0.02 1.68 16 30 H 0.04 0.55 8.05 -2.39 -0.02 0.53 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 1.29 8.09 -2.39 -0.02 1.27 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 2.39 7.04 -2.39 -0.02 2.37 16 37 H 0.08 2.16 7.89 -2.39 -0.02 2.14 16 38 H 0.40 15.78 5.84 -92.71 -0.54 15.23 16 39 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 40 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 41 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -73.79 322.96 -0.16 -73.95 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.47 Total: 19.92 kcal Atomic # 6 Polarization: 21.75 SS G_CDS: 5.58 Total: 27.33 kcal Atomic # 7 Polarization: -122.18 SS G_CDS: -8.17 Total: -130.35 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -0.06 Total: -35.64 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -73.79 -0.16 -73.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336480521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.426 kcal (2) G-P(sol) polarization free energy of solvation -73.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds