Wall clock time and date at job start Mon Mar 30 2020 04:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09009 * 109.35547 * 2 1 4 4 C 1.54241 * 109.46435 * 120.07348 * 2 1 3 5 5 N 1.45650 * 107.73335 * 171.43070 * 4 2 1 6 6 C 1.46409 * 116.80918 * 173.82375 * 5 4 2 7 7 C 1.54754 * 106.03120 * 151.64383 * 6 5 4 8 8 C 1.55283 * 105.00184 * 356.47704 * 7 6 5 9 9 C 1.48735 * 109.84809 * 293.88427 * 5 4 2 10 10 H 1.08997 * 111.96041 * 308.71442 * 9 5 4 11 11 C 1.52657 * 107.12211 * 70.74116 * 9 5 4 12 12 N 1.46853 * 109.42019 * 240.16706 * 2 1 3 13 13 C 1.34777 * 120.21359 * 12.89016 * 12 2 1 14 14 O 1.21586 * 119.99998 * 5.41506 * 13 12 2 15 15 N 1.34777 * 119.99932 * 185.41005 * 13 12 2 16 16 C 1.46502 * 119.99855 * 174.90444 * 15 13 12 17 17 C 1.50705 * 109.47023 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99872 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99950 * 180.27557 * 17 16 15 20 20 N 1.31513 * 119.99707 * 359.72135 * 19 17 16 21 21 Si 1.86793 * 119.99990 * 179.72573 * 19 17 16 22 22 H 1.48507 * 109.47409 * 59.99610 * 21 19 17 23 23 H 1.48493 * 109.47325 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47091 * 299.99954 * 21 19 17 25 25 H 1.09001 * 109.46452 * 169.50942 * 1 2 3 26 26 H 1.09000 * 109.47332 * 289.50603 * 1 2 3 27 27 H 1.08997 * 109.46786 * 49.50770 * 1 2 3 28 28 H 1.09004 * 109.94794 * 51.80989 * 4 2 1 29 29 H 1.08996 * 109.76315 * 290.94416 * 4 2 1 30 30 H 1.09000 * 110.14658 * 32.49989 * 6 5 4 31 31 H 1.09001 * 110.13569 * 270.78308 * 6 5 4 32 32 H 1.09001 * 110.33283 * 237.59367 * 7 6 5 33 33 H 1.08996 * 110.33460 * 115.36064 * 7 6 5 34 34 H 1.09000 * 110.86547 * 219.63339 * 8 7 6 35 35 H 1.08999 * 111.04639 * 96.04451 * 8 7 6 36 36 H 1.09003 * 110.00066 * 182.85347 * 11 9 5 37 37 H 1.08996 * 110.08967 * 61.49109 * 11 9 5 38 38 H 0.96999 * 120.00141 * 354.90418 * 15 13 12 39 39 H 1.08999 * 109.47350 * 59.99835 * 16 15 13 40 40 H 1.09004 * 109.47215 * 299.99679 * 16 15 13 41 41 H 0.97007 * 119.99863 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8913 1.0285 0.0000 4 6 2.0440 -0.7287 1.2585 5 7 3.4852 -0.8882 1.1213 6 6 4.2018 -1.4356 2.2747 7 6 5.4423 -2.1621 1.7018 8 6 5.2982 -2.0483 0.1598 9 6 3.7863 -1.8088 -0.0075 10 1 3.2291 -2.7425 0.0683 11 6 3.4425 -1.0668 -1.2965 12 7 2.0183 -0.6890 -1.2014 13 6 1.1731 -0.9696 -2.2130 14 8 0.0266 -0.5664 -2.1769 15 7 1.5988 -1.6970 -3.2648 16 6 0.6530 -2.0969 -4.3097 17 6 1.3763 -2.8961 -5.3628 18 1 2.4346 -3.0874 -5.2635 19 6 0.6881 -3.3787 -6.4558 20 7 -0.6007 -3.1462 -6.5764 21 14 1.5862 -4.3628 -7.7650 22 1 2.1810 -5.5771 -7.1507 23 1 0.6289 -4.7631 -8.8272 24 1 2.6633 -3.5302 -8.3583 25 1 -0.3632 -1.0105 -0.1871 26 1 -0.3634 0.3431 0.9687 27 1 -0.3633 0.6673 -0.7815 28 1 1.5706 -1.7072 1.3410 29 1 1.8211 -0.1351 2.1450 30 1 3.5673 -2.1418 2.8102 31 1 4.5126 -0.6302 2.9402 32 1 5.4423 -3.2088 2.0060 33 1 6.3564 -1.6702 2.0341 34 1 5.6008 -2.9750 -0.3278 35 1 5.8700 -1.2042 -0.2255 36 1 3.5986 -1.7196 -2.1554 37 1 4.0599 -0.1735 -1.3904 38 1 2.5313 -1.9558 -3.3299 39 1 0.2162 -1.2076 -4.7641 40 1 -0.1372 -2.7061 -3.8707 41 1 -1.0850 -3.4861 -7.3451 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336480522.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:13 Heat of formation + Delta-G solvation = -1.235355 kcal Electronic energy + Delta-G solvation = -21313.988788 eV Core-core repulsion = 18229.524290 eV Total energy + Delta-G solvation = -3084.464498 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.50134 -38.72331 -35.46142 -34.36771 -33.19273 -32.03512 -30.66718 -29.45810 -26.91421 -25.62490 -24.68137 -22.97737 -21.32660 -21.01843 -20.53668 -19.16266 -17.47187 -16.18383 -16.12828 -15.90639 -15.40232 -15.05636 -14.80660 -14.34462 -13.90533 -13.83416 -13.33792 -12.92488 -12.74562 -12.59616 -12.15943 -11.98242 -11.87327 -11.60095 -11.55222 -11.17297 -11.12458 -10.99272 -10.92884 -10.86278 -10.83640 -10.75072 -10.23010 -9.35162 -8.72287 -8.66722 -8.57361 -8.19025 -7.66609 -6.13001 -4.19476 3.16009 3.26972 3.32018 3.33825 3.78248 3.99081 4.32127 4.40148 4.49117 4.70521 4.74413 5.02787 5.07248 5.13743 5.22897 5.23901 5.29580 5.39023 5.51497 5.58705 5.63914 5.66514 5.71869 5.79267 5.85791 5.96818 6.01510 6.07315 6.49222 6.67455 6.76453 6.96950 7.11007 7.22263 7.55357 7.60790 7.61922 7.89964 8.05740 8.79151 8.94956 9.37726 9.52305 10.97208 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.023611 B = 0.004868 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.597302 B = 5750.719036 C = 6756.754184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.173 3.827 3 H 0.068 0.932 4 C 0.050 3.950 5 N -0.535 5.535 6 C 0.049 3.951 7 C -0.127 4.127 8 C -0.114 4.114 9 C 0.051 3.949 10 H 0.062 0.938 11 C 0.129 3.871 12 N -0.638 5.638 13 C 0.695 3.305 14 O -0.591 6.591 15 N -0.731 5.731 16 C 0.267 3.733 17 C -0.542 4.542 18 H 0.061 0.939 19 C 0.064 3.936 20 N -0.886 5.886 21 Si 0.903 3.097 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.062 0.938 26 H 0.036 0.964 27 H 0.087 0.913 28 H 0.038 0.962 29 H 0.082 0.918 30 H 0.037 0.963 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.384 0.616 39 H 0.025 0.975 40 H 0.022 0.978 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.740 2.943 16.698 20.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.068 3.932 3 H 0.086 0.914 4 C -0.079 4.079 5 N -0.260 5.260 6 C -0.079 4.079 7 C -0.165 4.165 8 C -0.153 4.153 9 C -0.058 4.058 10 H 0.080 0.920 11 C 0.006 3.994 12 N -0.378 5.378 13 C 0.397 3.603 14 O -0.471 6.471 15 N -0.386 5.386 16 C 0.146 3.854 17 C -0.580 4.580 18 H 0.079 0.921 19 C -0.139 4.139 20 N -0.523 5.523 21 Si 0.730 3.270 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.081 0.919 26 H 0.055 0.945 27 H 0.106 0.894 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.218 0.782 39 H 0.043 0.957 40 H 0.040 0.960 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.834 3.677 16.496 20.075 hybrid contribution 0.582 -1.531 -0.504 1.714 sum 11.416 2.146 15.992 19.766 Atomic orbital electron populations 1.22182 0.92463 1.04582 1.00183 1.21098 0.95235 0.94696 0.82165 0.91387 1.22577 0.86876 0.99860 0.98629 1.62947 1.10717 1.47208 1.05082 1.22525 0.94710 0.97660 0.93011 1.22595 0.97995 1.00226 0.95662 1.22365 0.94805 1.02391 0.95741 1.23019 0.96184 0.94394 0.92214 0.92038 1.21616 0.82297 0.99110 0.96424 1.47520 1.08279 1.63959 1.18042 1.16134 0.84436 0.79619 0.80136 1.90883 1.18198 1.58168 1.79822 1.45977 1.13409 1.55723 1.23473 1.18951 0.87850 0.95122 0.83453 1.21186 0.95582 1.34958 1.06274 0.92134 1.24931 0.94878 0.96135 0.97999 1.69972 1.07436 1.44921 1.29973 0.86487 0.79330 0.80227 0.80916 1.20129 1.21084 1.20081 0.91869 0.94527 0.89418 0.94339 0.89979 0.94469 0.90489 0.91527 0.90935 0.90706 0.90242 0.89796 0.90785 0.78166 0.95685 0.95969 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 7.64 37.16 0.28 -1.90 16 2 C 0.17 2.53 3.65 -67.09 -0.25 2.29 16 3 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 4 C 0.05 0.61 5.24 -3.85 -0.02 0.59 16 5 N -0.53 -6.10 4.65 -224.26 -1.04 -7.14 16 6 C 0.05 0.45 6.85 -3.17 -0.02 0.43 16 7 C -0.13 -1.01 6.98 -24.60 -0.17 -1.18 16 8 C -0.11 -1.03 6.60 -25.01 -0.17 -1.19 16 9 C 0.05 0.59 2.82 -66.36 -0.19 0.40 16 10 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 11 C 0.13 1.72 6.08 -3.59 -0.02 1.70 16 12 N -0.64 -10.59 3.02 -170.07 -0.51 -11.11 16 13 C 0.70 14.79 7.99 -86.92 -0.69 14.09 16 14 O -0.59 -14.44 12.06 5.29 0.06 -14.38 16 15 N -0.73 -16.13 5.46 -66.41 -0.36 -16.49 16 16 C 0.27 7.24 5.43 -5.19 -0.03 7.21 16 17 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 16 18 H 0.06 1.55 7.60 -52.48 -0.40 1.15 16 19 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 20 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 21 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H 0.06 1.17 7.03 -51.93 -0.37 0.80 16 26 H 0.04 0.47 8.11 -51.93 -0.42 0.05 16 27 H 0.09 1.63 6.47 -51.93 -0.34 1.29 16 28 H 0.04 0.51 8.05 -51.93 -0.42 0.09 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.04 0.34 8.03 -51.93 -0.42 -0.07 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 36 H 0.08 1.10 5.62 -51.93 -0.29 0.81 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.38 7.38 5.77 -40.82 -0.24 7.15 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 LS Contribution 317.77 15.07 4.79 4.79 Total: -1.00 -31.58 317.77 -9.70 -41.28 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -6.66 Total: 3.73 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: -1.69 Total: 8.96 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: -1.18 Total: -60.30 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.06 Total: -14.38 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.58 -9.70 -41.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336480522.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.042 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds