Wall clock time and date at job start Mon Mar 30 2020 04:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09009 * 109.35547 * 2 1 4 4 C 1.54241 * 109.46435 * 120.07348 * 2 1 3 5 5 N 1.45650 * 107.73335 * 171.43070 * 4 2 1 6 6 C 1.46409 * 116.80918 * 173.82375 * 5 4 2 7 7 C 1.54754 * 106.03120 * 151.64383 * 6 5 4 8 8 C 1.55283 * 105.00184 * 356.47704 * 7 6 5 9 9 C 1.48735 * 109.84809 * 293.88427 * 5 4 2 10 10 H 1.08997 * 111.96041 * 308.71442 * 9 5 4 11 11 C 1.52657 * 107.12211 * 70.74116 * 9 5 4 12 12 N 1.46853 * 109.42019 * 240.16706 * 2 1 3 13 13 C 1.34777 * 120.21359 * 12.89016 * 12 2 1 14 14 O 1.21586 * 119.99998 * 5.41506 * 13 12 2 15 15 N 1.34777 * 119.99932 * 185.41005 * 13 12 2 16 16 C 1.46502 * 119.99855 * 174.90444 * 15 13 12 17 17 C 1.50705 * 109.47023 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99872 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99950 * 180.27557 * 17 16 15 20 20 N 1.31513 * 119.99707 * 359.72135 * 19 17 16 21 21 Si 1.86793 * 119.99990 * 179.72573 * 19 17 16 22 22 H 1.48507 * 109.47409 * 59.99610 * 21 19 17 23 23 H 1.48493 * 109.47325 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47091 * 299.99954 * 21 19 17 25 25 H 1.09001 * 109.46452 * 169.50942 * 1 2 3 26 26 H 1.09000 * 109.47332 * 289.50603 * 1 2 3 27 27 H 1.08997 * 109.46786 * 49.50770 * 1 2 3 28 28 H 1.09004 * 109.94794 * 51.80989 * 4 2 1 29 29 H 1.08996 * 109.76315 * 290.94416 * 4 2 1 30 30 H 1.09000 * 110.14658 * 32.49989 * 6 5 4 31 31 H 1.09001 * 110.13569 * 270.78308 * 6 5 4 32 32 H 1.09001 * 110.33283 * 237.59367 * 7 6 5 33 33 H 1.08996 * 110.33460 * 115.36064 * 7 6 5 34 34 H 1.09000 * 110.86547 * 219.63339 * 8 7 6 35 35 H 1.08999 * 111.04639 * 96.04451 * 8 7 6 36 36 H 1.09003 * 110.00066 * 182.85347 * 11 9 5 37 37 H 1.08996 * 110.08967 * 61.49109 * 11 9 5 38 38 H 0.96999 * 120.00141 * 354.90418 * 15 13 12 39 39 H 1.08999 * 109.47350 * 59.99835 * 16 15 13 40 40 H 1.09004 * 109.47215 * 299.99679 * 16 15 13 41 41 H 0.97007 * 119.99863 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8913 1.0285 0.0000 4 6 2.0440 -0.7287 1.2585 5 7 3.4852 -0.8882 1.1213 6 6 4.2018 -1.4356 2.2747 7 6 5.4423 -2.1621 1.7018 8 6 5.2982 -2.0483 0.1598 9 6 3.7863 -1.8088 -0.0075 10 1 3.2291 -2.7425 0.0683 11 6 3.4425 -1.0668 -1.2965 12 7 2.0183 -0.6890 -1.2014 13 6 1.1731 -0.9696 -2.2130 14 8 0.0266 -0.5664 -2.1769 15 7 1.5988 -1.6970 -3.2648 16 6 0.6530 -2.0969 -4.3097 17 6 1.3763 -2.8961 -5.3628 18 1 2.4346 -3.0874 -5.2635 19 6 0.6881 -3.3787 -6.4558 20 7 -0.6007 -3.1462 -6.5764 21 14 1.5862 -4.3628 -7.7650 22 1 2.1810 -5.5771 -7.1507 23 1 0.6289 -4.7631 -8.8272 24 1 2.6633 -3.5302 -8.3583 25 1 -0.3632 -1.0105 -0.1871 26 1 -0.3634 0.3431 0.9687 27 1 -0.3633 0.6673 -0.7815 28 1 1.5706 -1.7072 1.3410 29 1 1.8211 -0.1351 2.1450 30 1 3.5673 -2.1418 2.8102 31 1 4.5126 -0.6302 2.9402 32 1 5.4423 -3.2088 2.0060 33 1 6.3564 -1.6702 2.0341 34 1 5.6008 -2.9750 -0.3278 35 1 5.8700 -1.2042 -0.2255 36 1 3.5986 -1.7196 -2.1554 37 1 4.0599 -0.1735 -1.3904 38 1 2.5313 -1.9558 -3.3299 39 1 0.2162 -1.2076 -4.7641 40 1 -0.1372 -2.7061 -3.8707 41 1 -1.0850 -3.4861 -7.3451 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336480522.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:12 Heat of formation + Delta-G solvation = -23.782701 kcal Electronic energy + Delta-G solvation = -21314.966514 eV Core-core repulsion = 18229.524290 eV Total energy + Delta-G solvation = -3085.442224 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.79206 -40.00350 -36.86726 -36.11719 -34.83854 -33.63849 -31.67970 -30.65360 -28.88107 -26.67598 -25.79316 -24.85860 -22.77322 -21.79017 -21.64166 -20.73387 -19.09192 -17.89013 -17.52227 -17.02139 -16.80000 -16.42306 -16.23342 -15.62301 -15.27605 -15.25152 -14.61248 -14.49131 -14.04529 -13.85524 -13.71876 -13.38999 -13.31155 -12.97323 -12.86799 -12.65982 -12.41718 -12.28348 -12.19104 -12.03468 -11.95779 -11.90505 -11.47762 -11.44562 -10.77786 -10.34006 -9.97237 -9.57188 -9.22087 -8.27584 -6.44366 1.43343 1.48125 1.55978 1.73761 2.23534 2.38974 2.92409 3.07207 3.11684 3.57975 3.73272 3.82284 4.07382 4.15278 4.19929 4.22203 4.27435 4.48104 4.57965 4.64830 4.65429 4.75284 4.78854 4.90148 5.02321 5.05904 5.06592 5.16738 5.25107 5.28358 5.34333 5.35544 5.47442 5.70367 5.74850 5.85907 5.92155 6.08713 6.23472 6.66957 7.19430 7.26074 7.74594 8.84583 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.023611 B = 0.004868 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.597302 B = 5750.719036 C = 6756.754184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.167 3.833 3 H 0.080 0.920 4 C 0.060 3.940 5 N -0.538 5.538 6 C 0.046 3.954 7 C -0.122 4.122 8 C -0.109 4.109 9 C 0.051 3.949 10 H 0.044 0.956 11 C 0.125 3.875 12 N -0.630 5.630 13 C 0.689 3.311 14 O -0.630 6.630 15 N -0.727 5.727 16 C 0.288 3.712 17 C -0.556 4.556 18 H 0.082 0.918 19 C 0.005 3.995 20 N -0.931 5.931 21 Si 0.986 3.014 22 H -0.262 1.262 23 H -0.285 1.285 24 H -0.262 1.262 25 H 0.029 0.971 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.025 0.975 29 H 0.107 0.893 30 H 0.036 0.964 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.399 0.601 39 H -0.016 1.016 40 H -0.017 1.017 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.971 2.490 17.765 23.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.063 3.937 3 H 0.098 0.902 4 C -0.069 4.069 5 N -0.263 5.263 6 C -0.081 4.081 7 C -0.160 4.160 8 C -0.147 4.147 9 C -0.058 4.058 10 H 0.062 0.938 11 C 0.002 3.998 12 N -0.369 5.369 13 C 0.391 3.609 14 O -0.513 6.513 15 N -0.383 5.383 16 C 0.165 3.835 17 C -0.594 4.594 18 H 0.100 0.900 19 C -0.194 4.194 20 N -0.569 5.569 21 Si 0.809 3.191 22 H -0.186 1.186 23 H -0.210 1.210 24 H -0.186 1.186 25 H 0.049 0.951 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.125 0.875 30 H 0.055 0.945 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.236 0.764 39 H 0.002 0.998 40 H 0.001 0.999 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.140 3.236 17.629 22.830 hybrid contribution -0.455 -1.318 -0.738 1.577 sum 13.685 1.919 16.891 21.824 Atomic orbital electron populations 1.21969 0.93759 1.01792 1.00904 1.21312 0.94293 0.95566 0.82482 0.90216 1.22434 0.87521 0.99187 0.97775 1.62962 1.09973 1.47351 1.06001 1.22640 0.94899 0.98255 0.92312 1.22604 0.98036 1.00752 0.94569 1.22374 0.92371 1.03204 0.96800 1.22966 0.98126 0.93318 0.91362 0.93836 1.21883 0.80106 1.00068 0.97721 1.47585 1.09204 1.62960 1.17120 1.16355 0.84519 0.79317 0.80733 1.90876 1.20223 1.59456 1.80712 1.45606 1.13407 1.56303 1.23033 1.18365 0.87982 0.92775 0.84377 1.21549 0.96577 1.34883 1.06341 0.90044 1.26057 0.95610 0.97118 1.00647 1.70142 1.09577 1.46209 1.30991 0.85197 0.77974 0.78733 0.77237 1.18612 1.21042 1.18628 0.95138 0.90990 0.92594 0.95697 0.87461 0.94524 0.89130 0.90855 0.89251 0.89785 0.89479 0.89832 0.89199 0.76356 0.99767 0.99928 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 7.64 71.98 0.55 -3.60 16 2 C 0.17 4.79 3.65 45.35 0.17 4.96 16 3 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 4 C 0.06 1.35 5.24 86.96 0.46 1.81 16 5 N -0.54 -10.87 4.65 -863.43 -4.02 -14.89 16 6 C 0.05 0.70 6.85 86.99 0.60 1.30 16 7 C -0.12 -1.50 6.98 31.98 0.22 -1.28 16 8 C -0.11 -1.61 6.60 31.71 0.21 -1.40 16 9 C 0.05 1.09 2.82 44.78 0.13 1.22 16 10 H 0.04 1.10 8.07 -2.39 -0.02 1.08 16 11 C 0.12 3.14 6.08 86.05 0.52 3.67 16 12 N -0.63 -20.97 3.02 -810.24 -2.45 -23.42 16 13 C 0.69 30.54 7.99 179.05 1.43 31.97 16 14 O -0.63 -32.81 12.06 -3.99 -0.05 -32.85 16 15 N -0.73 -33.21 5.46 -482.28 -2.63 -35.84 16 16 C 0.29 16.46 5.43 85.63 0.47 16.92 16 17 C -0.56 -30.88 9.28 25.60 0.24 -30.64 16 18 H 0.08 4.08 7.60 -2.91 -0.02 4.06 16 19 C 0.01 0.30 5.46 84.66 0.46 0.76 16 20 N -0.93 -56.92 13.29 21.45 0.28 -56.63 16 21 Si 0.99 42.61 29.54 68.60 2.03 44.64 16 22 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 23 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 24 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 25 H 0.03 1.17 7.03 -2.39 -0.02 1.16 16 26 H 0.07 1.80 8.11 -2.39 -0.02 1.78 16 27 H 0.06 2.18 6.47 -2.39 -0.02 2.17 16 28 H 0.02 0.64 8.05 -2.38 -0.02 0.62 16 29 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.04 0.57 8.03 -2.39 -0.02 0.55 16 31 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.09 1.19 8.08 -2.39 -0.02 1.17 16 36 H 0.08 2.09 5.62 -2.39 -0.01 2.08 16 37 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.40 15.43 5.77 -92.71 -0.53 14.89 16 39 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 40 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 41 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 Total: -1.00 -71.97 317.77 -0.91 -72.88 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.48 Total: 20.44 kcal Atomic # 6 Polarization: 20.23 SS G_CDS: 5.44 Total: 25.68 kcal Atomic # 7 Polarization: -121.97 SS G_CDS: -8.81 Total: -130.78 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -0.05 Total: -32.85 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -71.97 -0.91 -72.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336480522.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.101 kcal (2) G-P(sol) polarization free energy of solvation -71.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds