Wall clock time and date at job start Mon Mar 30 2020 06:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46846 * 110.99711 * 2 1 4 4 C 1.53037 * 109.51987 * 174.16203 * 3 2 1 5 5 C 1.53117 * 109.28191 * 59.18208 * 4 3 2 6 6 C 1.53122 * 109.15932 * 302.34661 * 5 4 3 7 7 C 1.46852 * 110.99718 * 235.79541 * 2 1 3 8 8 H 1.08997 * 109.46196 * 65.83318 * 7 2 1 9 9 C 1.52995 * 109.46386 * 305.85028 * 7 2 1 10 10 N 1.46901 * 109.47045 * 66.71737 * 9 7 2 11 11 C 1.46898 * 111.00357 * 190.00243 * 10 9 7 12 12 C 1.53230 * 109.34284 * 172.74525 * 11 10 9 13 13 N 1.47078 * 108.52196 * 53.83008 * 12 11 10 14 14 C 1.36937 * 120.88294 * 128.84259 * 13 12 11 15 15 H 1.07999 * 119.99762 * 210.40286 * 14 13 12 16 16 C 1.38805 * 120.00225 * 30.39349 * 14 13 12 17 17 N 1.31623 * 120.00270 * 12.11124 * 16 14 13 18 18 Si 1.86802 * 120.00017 * 192.11254 * 16 14 13 19 19 H 1.48496 * 109.47166 * 59.99956 * 18 16 14 20 20 H 1.48503 * 109.47257 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47224 * 299.99930 * 18 16 14 22 22 C 1.47079 * 118.23371 * 308.81256 * 13 12 11 23 23 C 1.46892 * 111.00152 * 65.69563 * 10 9 7 24 24 H 1.09009 * 109.46977 * 191.77506 * 1 2 3 25 25 H 1.08995 * 109.47436 * 311.76951 * 1 2 3 26 26 H 1.09002 * 109.47071 * 71.77671 * 1 2 3 27 27 H 1.08993 * 109.46601 * 294.17720 * 3 2 1 28 28 H 1.09003 * 109.46179 * 54.15448 * 3 2 1 29 29 H 1.09008 * 109.50370 * 179.12484 * 4 3 2 30 30 H 1.09008 * 109.50801 * 299.20088 * 4 3 2 31 31 H 1.09005 * 109.52068 * 62.24655 * 5 4 3 32 32 H 1.08993 * 109.52595 * 182.37340 * 5 4 3 33 33 H 1.08994 * 109.49875 * 297.70856 * 6 5 4 34 34 H 1.09001 * 109.49994 * 177.59546 * 6 5 4 35 35 H 1.09002 * 109.47367 * 306.71718 * 9 7 2 36 36 H 1.08996 * 109.47248 * 186.71539 * 9 7 2 37 37 H 1.09002 * 109.49406 * 52.78135 * 11 10 9 38 38 H 1.09005 * 109.51126 * 292.72177 * 11 10 9 39 39 H 1.09004 * 109.62985 * 173.53897 * 12 11 10 40 40 H 1.08996 * 109.63072 * 294.11652 * 12 11 10 41 41 H 0.96994 * 120.00098 * 179.97438 * 17 16 14 42 42 H 1.09003 * 109.63040 * 291.47311 * 22 13 12 43 43 H 1.09002 * 109.78627 * 170.99181 * 22 13 12 44 44 H 1.09000 * 109.49379 * 307.21269 * 23 10 9 45 45 H 1.09005 * 109.49514 * 67.29710 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5180 1.3342 0.1467 5 6 4.1188 0.5371 -1.0144 6 6 3.5181 -0.8714 -1.0210 7 6 1.9952 -0.7707 -1.1339 8 1 1.7325 -0.2706 -2.0660 9 6 1.3891 -2.1754 -1.1206 10 7 -0.0522 -2.0894 -1.3908 11 6 -0.7104 -3.3812 -1.1539 12 6 -2.2282 -3.2062 -1.2695 13 7 -2.5292 -2.5838 -2.5677 14 6 -3.4590 -3.1312 -3.4109 15 1 -3.3521 -3.0173 -4.4795 16 6 -4.5388 -3.8324 -2.8922 17 7 -4.8047 -3.7733 -1.6045 18 14 -5.6145 -4.8602 -4.0218 19 1 -4.7880 -5.9064 -4.6757 20 1 -6.6921 -5.5041 -3.2284 21 1 -6.2192 -3.9867 -5.0595 22 6 -1.8056 -1.3574 -2.9357 23 6 -0.3042 -1.6051 -2.7545 24 1 -0.3633 -1.0061 0.2097 25 1 -0.3634 0.6845 0.7664 26 1 -0.3633 0.3214 -0.9761 27 1 1.7324 1.8609 -0.9375 28 1 1.5634 1.9257 0.8331 29 1 3.9099 2.3513 0.1311 30 1 3.7814 0.8573 1.0909 31 1 3.8886 1.0356 -1.9561 32 1 5.1998 0.4725 -0.8912 33 1 3.7814 -1.3835 -0.0956 34 1 3.9099 -1.4301 -1.8709 35 1 1.5490 -2.6310 -0.1433 36 1 1.8669 -2.7845 -1.8879 37 1 -0.4605 -3.7390 -0.1550 38 1 -0.3700 -4.1045 -1.8950 39 1 -2.7148 -4.1798 -1.2087 40 1 -2.5853 -2.5645 -0.4641 41 1 -5.5595 -4.2631 -1.2422 42 1 -2.1220 -0.5378 -2.2905 43 1 -2.0121 -1.1051 -3.9759 44 1 0.2400 -0.6747 -2.9165 45 1 0.0304 -2.3528 -3.4737 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336695893.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:55 Heat of formation + Delta-G solvation = 24.890865 kcal Electronic energy + Delta-G solvation = -22105.410713 eV Core-core repulsion = 19157.912228 eV Total energy + Delta-G solvation = -2947.498485 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.77893 -39.00047 -36.20405 -34.19888 -33.52528 -32.24962 -31.44794 -28.82252 -27.55372 -25.97896 -24.48986 -24.02897 -23.70756 -21.87519 -20.86206 -20.46813 -18.72174 -17.05955 -16.74328 -16.41353 -16.31405 -15.65921 -15.46612 -15.29387 -15.25536 -14.94208 -14.86824 -14.32223 -13.95661 -13.77656 -13.29872 -13.15905 -12.96639 -12.81833 -12.65334 -12.55961 -12.38477 -12.34847 -12.13691 -11.97859 -11.93156 -11.59574 -11.51506 -11.48563 -11.23452 -11.02561 -10.58898 -9.18708 -8.94803 -8.60727 -7.87430 -5.37477 1.46109 1.47964 1.55070 2.49732 2.96893 3.09681 3.28950 3.66929 3.84617 3.97847 4.07748 4.20159 4.27174 4.31770 4.37128 4.43047 4.52061 4.57710 4.63703 4.69913 4.71403 4.78479 4.82495 4.87550 4.89020 4.91425 5.01864 5.05265 5.12234 5.15413 5.21662 5.27210 5.32963 5.36762 5.53956 5.59940 5.66422 5.71083 6.16281 6.23894 6.29403 6.38948 6.42110 7.14262 7.82967 8.38933 9.18622 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.045162 B = 0.004352 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.845967 B = 6432.903933 C = 6521.347000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.536 5.536 3 C 0.050 3.950 4 C -0.111 4.111 5 C -0.117 4.117 6 C -0.108 4.108 7 C 0.094 3.906 8 H 0.030 0.970 9 C 0.061 3.939 10 N -0.525 5.525 11 C 0.050 3.950 12 C 0.191 3.809 13 N -0.612 5.612 14 C -0.270 4.270 15 H 0.063 0.937 16 C -0.045 4.045 17 N -0.934 5.934 18 Si 0.970 3.030 19 H -0.278 1.278 20 H -0.292 1.292 21 H -0.276 1.276 22 C 0.149 3.851 23 C 0.056 3.944 24 H 0.088 0.912 25 H 0.042 0.958 26 H 0.010 0.990 27 H 0.021 0.979 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.039 0.961 37 H 0.080 0.920 38 H 0.017 0.983 39 H 0.053 0.947 40 H 0.000 1.000 41 H 0.251 0.749 42 H 0.014 0.986 43 H 0.054 0.946 44 H 0.081 0.919 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.084 7.509 2.276 19.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.261 5.261 3 C -0.078 4.078 4 C -0.149 4.149 5 C -0.155 4.155 6 C -0.146 4.146 7 C -0.015 4.015 8 H 0.048 0.952 9 C -0.067 4.067 10 N -0.250 5.250 11 C -0.080 4.080 12 C 0.065 3.935 13 N -0.336 5.336 14 C -0.400 4.400 15 H 0.081 0.919 16 C -0.241 4.241 17 N -0.579 5.579 18 Si 0.798 3.202 19 H -0.204 1.204 20 H -0.218 1.218 21 H -0.202 1.202 22 C 0.023 3.977 23 C -0.074 4.074 24 H 0.106 0.894 25 H 0.061 0.939 26 H 0.028 0.972 27 H 0.039 0.961 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.057 0.943 37 H 0.098 0.902 38 H 0.035 0.965 39 H 0.071 0.929 40 H 0.018 0.982 41 H 0.060 0.940 42 H 0.032 0.968 43 H 0.072 0.928 44 H 0.099 0.901 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 17.893 7.543 3.099 19.664 hybrid contribution -1.168 -0.725 -1.738 2.216 sum 16.725 6.817 1.361 18.113 Atomic orbital electron populations 1.22521 0.86544 1.03288 0.98131 1.62011 1.08120 1.13372 1.42612 1.22187 0.96587 0.89132 0.99850 1.21568 0.93310 1.00807 0.99220 1.21559 1.00564 0.95000 0.98365 1.21589 0.92308 0.98038 1.02697 1.21651 0.95256 0.93037 0.91557 0.95199 1.22219 0.86830 0.96469 1.01207 1.62444 1.10787 1.26955 1.24777 1.22595 0.96201 0.89419 0.99752 1.20560 0.90335 0.96716 0.85877 1.44305 1.44867 1.25699 1.18723 1.19452 1.01149 1.30021 0.89362 0.91936 1.25884 0.97974 1.02834 0.97434 1.70145 1.29937 1.44828 1.13036 0.85317 0.78097 0.78745 0.78080 1.20388 1.21799 1.20169 1.21050 0.90654 0.88367 0.97622 1.22465 0.97078 0.99072 0.88752 0.89383 0.93879 0.97152 0.96084 0.90892 0.90280 0.91318 0.92588 0.90191 0.91010 0.90878 0.90042 0.94305 0.90169 0.96458 0.92868 0.98164 0.94004 0.96827 0.92784 0.90120 0.96143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.32 8.19 127.69 1.05 2.37 16 2 N -0.54 -13.92 4.75 -897.17 -4.26 -18.18 16 3 C 0.05 1.09 5.46 86.33 0.47 1.56 16 4 C -0.11 -1.87 6.09 30.65 0.19 -1.68 16 5 C -0.12 -1.88 6.00 30.67 0.18 -1.70 16 6 C -0.11 -2.03 5.37 30.65 0.16 -1.87 16 7 C 0.09 2.29 1.99 44.94 0.09 2.38 16 8 H 0.03 0.80 6.13 -2.39 -0.01 0.79 16 9 C 0.06 1.66 4.22 86.30 0.36 2.02 16 10 N -0.53 -17.84 1.13 -895.30 -1.01 -18.85 16 11 C 0.05 1.92 5.62 86.38 0.49 2.41 16 12 C 0.19 9.48 5.36 86.35 0.46 9.94 16 13 N -0.61 -31.75 3.02 -698.16 -2.11 -33.86 16 14 C -0.27 -15.19 9.62 84.03 0.81 -14.38 16 15 H 0.06 3.44 7.86 -2.91 -0.02 3.41 16 16 C -0.05 -2.57 5.03 84.86 0.43 -2.15 16 17 N -0.93 -55.86 11.14 21.65 0.24 -55.62 16 18 Si 0.97 45.28 29.57 68.60 2.03 47.31 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 C 0.15 6.45 6.69 86.35 0.58 7.03 16 23 C 0.06 1.96 4.61 86.38 0.40 2.36 16 24 H 0.09 3.09 5.78 -2.38 -0.01 3.08 16 25 H 0.04 1.25 7.95 -2.39 -0.02 1.23 16 26 H 0.01 0.33 6.73 -2.39 -0.02 0.32 16 27 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.07 1.53 8.00 -2.39 -0.02 1.51 16 29 H 0.08 1.06 8.14 -2.38 -0.02 1.05 16 30 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.08 2.21 7.97 -2.39 -0.02 2.19 16 36 H 0.04 1.03 8.12 -2.39 -0.02 1.01 16 37 H 0.08 2.80 7.99 -2.39 -0.02 2.78 16 38 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.05 2.96 6.26 -2.38 -0.01 2.94 16 40 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 41 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 42 H 0.01 0.62 7.98 -2.39 -0.02 0.60 16 43 H 0.05 2.28 7.96 -2.39 -0.02 2.26 16 44 H 0.08 2.52 5.78 -2.39 -0.01 2.51 16 45 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 Total: -1.00 -62.02 329.41 1.48 -60.54 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 0.93 Total: 10.36 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 5.66 Total: 8.31 kcal Atomic # 7 Polarization: -119.37 SS G_CDS: -7.14 Total: -126.51 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -62.02 1.48 -60.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336695893.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.428 kcal (2) G-P(sol) polarization free energy of solvation -62.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds