Wall clock time and date at job start Mon Mar 30 2020 04:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 110.99308 * 2 1 4 4 C 1.50699 * 109.47185 * 66.04727 * 3 2 1 5 5 O 1.21289 * 120.00290 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99950 * 179.97438 * 4 3 2 7 7 C 1.37093 * 120.00083 * 179.97438 * 6 4 3 8 8 H 1.07997 * 120.00245 * 0.02562 * 7 6 4 9 9 C 1.38949 * 120.00078 * 179.97438 * 7 6 4 10 10 N 1.31416 * 119.99823 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00289 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47059 * 59.99914 * 11 9 7 13 13 H 1.48495 * 109.47448 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47158 * 300.00365 * 11 9 7 15 15 C 1.46899 * 111.00178 * 236.04507 * 2 1 3 16 16 H 1.09003 * 110.28693 * 59.99767 * 15 2 1 17 17 C 1.54259 * 110.32521 * 297.87073 * 15 2 1 18 18 C 1.54382 * 105.14764 * 240.95344 * 17 15 2 19 19 N 1.48724 * 104.51485 * 336.26662 * 18 17 15 20 20 C 1.46901 * 111.00943 * 158.97128 * 19 18 17 21 21 C 1.53006 * 117.49543 * 133.23816 * 20 19 18 22 22 C 1.53001 * 117.50126 * 64.57912 * 20 19 18 23 23 C 1.48560 * 104.28914 * 39.36637 * 19 18 17 24 24 H 1.09009 * 109.46879 * 189.92772 * 1 2 3 25 25 H 1.08999 * 109.47576 * 309.92579 * 1 2 3 26 26 H 1.08998 * 109.47236 * 69.93409 * 1 2 3 27 27 H 1.09003 * 109.46719 * 186.04205 * 3 2 1 28 28 H 1.08996 * 109.47722 * 306.04107 * 3 2 1 29 29 H 0.97003 * 119.99557 * 0.02562 * 6 4 3 30 30 H 0.97000 * 119.99540 * 180.02562 * 10 9 7 31 31 H 1.09002 * 110.32326 * 359.90039 * 17 15 2 32 32 H 1.08997 * 110.32393 * 122.00322 * 17 15 2 33 33 H 1.08996 * 110.41239 * 94.98122 * 18 17 15 34 34 H 1.08999 * 110.40622 * 217.41577 * 18 17 15 35 35 H 1.08999 * 115.54916 * 278.90425 * 20 19 18 36 36 H 1.08994 * 117.50172 * 359.97438 * 21 20 19 37 37 H 1.08999 * 117.49388 * 145.01777 * 21 20 19 38 38 H 1.08997 * 117.49622 * 214.97760 * 22 20 19 39 39 H 1.09000 * 117.49666 * 359.97270 * 22 20 19 40 40 H 1.08993 * 110.40812 * 201.79058 * 23 19 18 41 41 H 1.08995 * 110.41018 * 79.34615 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6367 2.0471 1.2984 5 8 1.0045 1.4456 2.1408 6 7 2.0186 3.3199 1.5237 7 6 1.6919 3.9348 2.7047 8 1 1.1290 3.3992 3.4547 9 6 2.0860 5.2468 2.9371 10 7 2.7714 5.8984 2.0247 11 14 1.6416 6.0844 4.5466 12 1 2.2324 5.3264 5.6787 13 1 2.1742 7.4706 4.5468 14 1 0.1644 6.1221 4.6936 15 6 1.9955 -0.7660 -1.1375 16 1 1.6537 -0.3310 -2.0767 17 6 1.5562 -2.2414 -1.0393 18 6 2.8693 -3.0479 -0.9456 19 7 3.8935 -2.1659 -1.5660 20 6 5.2451 -2.5392 -1.1280 21 6 6.3274 -2.6613 -2.2026 22 6 5.7642 -3.9192 -1.5365 23 6 3.5382 -0.8029 -1.0938 24 1 -0.3633 -1.0124 0.1772 25 1 -0.3634 0.6595 0.7881 26 1 -0.3633 0.3526 -0.9653 27 1 3.0796 1.3445 -0.1082 28 1 1.5610 1.9274 -0.8309 29 1 2.5238 3.8011 0.8498 30 1 3.0469 6.8142 2.1871 31 1 0.9514 -2.3977 -0.1460 32 1 0.9973 -2.5301 -1.9294 33 1 3.1200 -3.2465 0.0964 34 1 2.7823 -3.9817 -1.5011 35 1 5.5454 -2.1570 -0.1524 36 1 6.0365 -2.4651 -3.2345 37 1 7.3398 -2.3599 -1.9337 38 1 6.4063 -4.4448 -0.8297 39 1 5.1027 -4.5504 -2.1299 40 1 3.9556 -0.0487 -1.7609 41 1 3.8934 -0.6490 -0.0749 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348178405.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:26 Heat of formation + Delta-G solvation = 11.130375 kcal Electronic energy + Delta-G solvation = -20596.731258 eV Core-core repulsion = 17512.802979 eV Total energy + Delta-G solvation = -3083.928279 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.65082 -38.29812 -36.80790 -34.68786 -33.73081 -31.23967 -29.99893 -28.53329 -27.66150 -24.88066 -23.41960 -22.66772 -22.10767 -20.52396 -19.61356 -19.07412 -17.82637 -16.82223 -16.29751 -15.80465 -15.20348 -14.69802 -14.47868 -14.37553 -13.85664 -13.65805 -13.43223 -13.22881 -12.99190 -12.34336 -12.14798 -11.92324 -11.68739 -11.53371 -11.50946 -11.18189 -11.16221 -10.99113 -10.82376 -10.72630 -10.52074 -10.43251 -10.20055 -10.16215 -9.45359 -8.56388 -8.40835 -7.95947 -7.83300 -6.40328 -3.81123 3.20729 3.26339 3.30641 3.60132 3.67936 3.92368 4.10360 4.30659 4.59854 4.69801 4.80578 4.93846 5.00740 5.12684 5.22286 5.26229 5.37728 5.47431 5.51189 5.52912 5.69587 5.73261 5.75279 5.79426 5.88252 5.96654 5.98293 5.99746 6.02341 6.04854 6.12395 6.31764 6.56130 6.68960 6.98805 7.31830 7.46914 7.56285 8.07765 8.63596 9.19491 9.56177 10.08277 10.77405 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.027032 B = 0.003879 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.554804 B = 7216.276015 C = 7840.506971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.513 5.513 3 C 0.043 3.957 4 C 0.444 3.556 5 O -0.578 6.578 6 N -0.564 5.564 7 C -0.299 4.299 8 H 0.102 0.898 9 C 0.022 3.978 10 N -0.902 5.902 11 Si 0.930 3.070 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.274 1.274 15 C 0.079 3.921 16 H 0.048 0.952 17 C -0.118 4.118 18 C 0.040 3.960 19 N -0.486 5.486 20 C -0.005 4.005 21 C -0.162 4.162 22 C -0.173 4.173 23 C 0.041 3.959 24 H 0.061 0.939 25 H 0.094 0.906 26 H 0.014 0.986 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.392 0.608 30 H 0.272 0.728 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.458 -14.581 -9.693 17.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.237 5.237 3 C -0.088 4.088 4 C 0.230 3.770 5 O -0.462 6.462 6 N -0.201 5.201 7 C -0.429 4.429 8 H 0.120 0.880 9 C -0.179 4.179 10 N -0.544 5.544 11 Si 0.757 3.243 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.199 1.199 15 C -0.030 4.030 16 H 0.066 0.934 17 C -0.156 4.156 18 C -0.087 4.087 19 N -0.210 5.210 20 C -0.115 4.115 21 C -0.200 4.200 22 C -0.211 4.211 23 C -0.087 4.087 24 H 0.080 0.920 25 H 0.112 0.888 26 H 0.032 0.968 27 H 0.106 0.894 28 H 0.065 0.935 29 H 0.225 0.775 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.118 0.882 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.098 0.902 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.265 -15.050 -9.269 17.974 hybrid contribution -0.014 1.316 0.472 1.398 sum 3.252 -13.734 -8.796 16.631 Atomic orbital electron populations 1.22512 0.86613 1.02714 1.00559 1.61740 1.08672 1.12623 1.40695 1.21880 1.00763 0.89074 0.97111 1.19744 0.85419 0.82924 0.88950 1.90485 1.43895 1.64680 1.47130 1.41864 1.49443 1.10782 1.18031 1.19646 1.32967 0.95476 0.94798 0.87994 1.25252 0.96821 0.96637 0.99199 1.69608 1.37992 1.12311 1.34462 0.85925 0.78892 0.77923 0.81519 1.19908 1.20990 1.19935 1.22379 0.94110 0.94332 0.92214 0.93384 1.22387 0.97068 0.93554 1.02567 1.23022 0.91182 0.96516 0.97984 1.65229 1.00077 1.02617 1.53061 1.22630 0.90453 1.00885 0.97515 1.23024 0.97280 1.01125 0.98586 1.23005 1.03562 0.90675 1.03844 1.23180 0.94666 0.90869 0.99953 0.91984 0.88761 0.96788 0.89449 0.93471 0.77507 0.91843 0.89854 0.91292 0.93340 0.90520 0.89128 0.88241 0.88834 0.88824 0.88501 0.90158 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 8.87 60.07 0.53 0.92 16 2 N -0.51 -8.69 4.28 -234.66 -1.00 -9.70 16 3 C 0.04 0.79 5.26 -4.98 -0.03 0.76 16 4 C 0.44 10.56 7.41 -10.98 -0.08 10.47 16 5 O -0.58 -15.58 13.97 5.55 0.08 -15.51 16 6 N -0.56 -14.39 5.29 -10.97 -0.06 -14.45 16 7 C -0.30 -8.37 9.68 -14.94 -0.14 -8.52 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 9 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 10 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 11 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 15 C 0.08 1.09 2.77 -66.33 -0.18 0.90 16 16 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 17 C -0.12 -1.41 6.20 -25.35 -0.16 -1.56 16 18 C 0.04 0.46 6.21 -2.09 -0.01 0.45 16 19 N -0.49 -5.90 5.53 -221.88 -1.23 -7.12 16 20 C -0.01 -0.06 5.09 -67.71 -0.34 -0.41 16 21 C -0.16 -1.53 10.46 -26.69 -0.28 -1.81 16 22 C -0.17 -1.56 10.09 -26.69 -0.27 -1.83 16 23 C 0.04 0.55 4.73 -2.18 -0.01 0.54 16 24 H 0.06 0.91 6.67 -51.92 -0.35 0.56 16 25 H 0.09 1.88 5.78 -51.93 -0.30 1.58 16 26 H 0.01 0.20 8.12 -51.93 -0.42 -0.22 16 27 H 0.09 1.47 6.55 -51.93 -0.34 1.13 16 28 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 29 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 30 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.08 1.06 6.59 -51.93 -0.34 0.72 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.59 8.00 -51.93 -0.42 0.17 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.09 1.05 7.88 -51.93 -0.41 0.64 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.06 0.93 7.38 -51.93 -0.38 0.55 16 LS Contribution 328.86 15.07 4.96 4.96 Total: -1.00 -30.24 328.86 -9.22 -39.46 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -6.59 Total: 9.73 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -1.07 Total: 0.43 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -1.56 Total: -55.18 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: 0.08 Total: -15.51 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.24 -9.22 -39.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348178405.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.595 kcal (2) G-P(sol) polarization free energy of solvation -30.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds