Wall clock time and date at job start Mon Mar 30 2020 04:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 110.99308 * 2 1 4 4 C 1.50699 * 109.47185 * 66.04727 * 3 2 1 5 5 O 1.21289 * 120.00290 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99950 * 179.97438 * 4 3 2 7 7 C 1.37093 * 120.00083 * 179.97438 * 6 4 3 8 8 H 1.07997 * 120.00245 * 0.02562 * 7 6 4 9 9 C 1.38949 * 120.00078 * 179.97438 * 7 6 4 10 10 N 1.31416 * 119.99823 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00289 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47059 * 59.99914 * 11 9 7 13 13 H 1.48495 * 109.47448 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47158 * 300.00365 * 11 9 7 15 15 C 1.46899 * 111.00178 * 236.04507 * 2 1 3 16 16 H 1.09003 * 110.28693 * 59.99767 * 15 2 1 17 17 C 1.54259 * 110.32521 * 297.87073 * 15 2 1 18 18 C 1.54382 * 105.14764 * 240.95344 * 17 15 2 19 19 N 1.48724 * 104.51485 * 336.26662 * 18 17 15 20 20 C 1.46901 * 111.00943 * 158.97128 * 19 18 17 21 21 C 1.53006 * 117.49543 * 133.23816 * 20 19 18 22 22 C 1.53001 * 117.50126 * 64.57912 * 20 19 18 23 23 C 1.48560 * 104.28914 * 39.36637 * 19 18 17 24 24 H 1.09009 * 109.46879 * 189.92772 * 1 2 3 25 25 H 1.08999 * 109.47576 * 309.92579 * 1 2 3 26 26 H 1.08998 * 109.47236 * 69.93409 * 1 2 3 27 27 H 1.09003 * 109.46719 * 186.04205 * 3 2 1 28 28 H 1.08996 * 109.47722 * 306.04107 * 3 2 1 29 29 H 0.97003 * 119.99557 * 0.02562 * 6 4 3 30 30 H 0.97000 * 119.99540 * 180.02562 * 10 9 7 31 31 H 1.09002 * 110.32326 * 359.90039 * 17 15 2 32 32 H 1.08997 * 110.32393 * 122.00322 * 17 15 2 33 33 H 1.08996 * 110.41239 * 94.98122 * 18 17 15 34 34 H 1.08999 * 110.40622 * 217.41577 * 18 17 15 35 35 H 1.08999 * 115.54916 * 278.90425 * 20 19 18 36 36 H 1.08994 * 117.50172 * 359.97438 * 21 20 19 37 37 H 1.08999 * 117.49388 * 145.01777 * 21 20 19 38 38 H 1.08997 * 117.49622 * 214.97760 * 22 20 19 39 39 H 1.09000 * 117.49666 * 359.97270 * 22 20 19 40 40 H 1.08993 * 110.40812 * 201.79058 * 23 19 18 41 41 H 1.08995 * 110.41018 * 79.34615 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6367 2.0471 1.2984 5 8 1.0045 1.4456 2.1408 6 7 2.0186 3.3199 1.5237 7 6 1.6919 3.9348 2.7047 8 1 1.1290 3.3992 3.4547 9 6 2.0860 5.2468 2.9371 10 7 2.7714 5.8984 2.0247 11 14 1.6416 6.0844 4.5466 12 1 2.2324 5.3264 5.6787 13 1 2.1742 7.4706 4.5468 14 1 0.1644 6.1221 4.6936 15 6 1.9955 -0.7660 -1.1375 16 1 1.6537 -0.3310 -2.0767 17 6 1.5562 -2.2414 -1.0393 18 6 2.8693 -3.0479 -0.9456 19 7 3.8935 -2.1659 -1.5660 20 6 5.2451 -2.5392 -1.1280 21 6 6.3274 -2.6613 -2.2026 22 6 5.7642 -3.9192 -1.5365 23 6 3.5382 -0.8029 -1.0938 24 1 -0.3633 -1.0124 0.1772 25 1 -0.3634 0.6595 0.7881 26 1 -0.3633 0.3526 -0.9653 27 1 3.0796 1.3445 -0.1082 28 1 1.5610 1.9274 -0.8309 29 1 2.5238 3.8011 0.8498 30 1 3.0469 6.8142 2.1871 31 1 0.9514 -2.3977 -0.1460 32 1 0.9973 -2.5301 -1.9294 33 1 3.1200 -3.2465 0.0964 34 1 2.7823 -3.9817 -1.5011 35 1 5.5454 -2.1570 -0.1524 36 1 6.0365 -2.4651 -3.2345 37 1 7.3398 -2.3599 -1.9337 38 1 6.4063 -4.4448 -0.8297 39 1 5.1027 -4.5504 -2.1299 40 1 3.9556 -0.0487 -1.7609 41 1 3.8934 -0.6490 -0.0749 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348178405.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:25 Heat of formation + Delta-G solvation = -11.021317 kcal Electronic energy + Delta-G solvation = -20597.691827 eV Core-core repulsion = 17512.802979 eV Total energy + Delta-G solvation = -3084.888849 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.85091 -39.88680 -37.96853 -36.11240 -35.44594 -33.28537 -31.07442 -29.62279 -29.14055 -26.72052 -24.82192 -23.50190 -22.98672 -21.53541 -20.94073 -20.62452 -19.84492 -18.01059 -17.43459 -17.30493 -16.55293 -16.31548 -15.87832 -15.84773 -15.21615 -15.05227 -14.88502 -14.58063 -13.93806 -13.81330 -13.47261 -13.27248 -13.12041 -12.98536 -12.75341 -12.46471 -12.39039 -12.37451 -12.15861 -12.12350 -11.92264 -11.82797 -11.45486 -11.31524 -10.97029 -10.27999 -10.00330 -9.51207 -9.21955 -8.46378 -5.95223 1.39434 1.41175 1.52185 2.04810 2.27678 2.60577 2.84053 3.02575 3.20189 3.42567 3.62029 3.76462 4.00205 4.11689 4.14302 4.21825 4.33655 4.34038 4.36138 4.49944 4.51629 4.57138 4.64137 4.74712 4.80235 4.84194 4.92040 4.95683 4.99874 5.08006 5.14956 5.24660 5.32185 5.40781 5.69240 5.87643 6.03237 6.12128 6.26288 6.60640 7.12779 7.56084 8.11980 8.70897 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.027032 B = 0.003879 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.554804 B = 7216.276015 C = 7840.506971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.530 5.530 3 C 0.057 3.943 4 C 0.442 3.558 5 O -0.613 6.613 6 N -0.574 5.574 7 C -0.334 4.334 8 H 0.079 0.921 9 C -0.012 4.012 10 N -0.921 5.921 11 Si 0.993 3.007 12 H -0.272 1.272 13 H -0.270 1.270 14 H -0.271 1.271 15 C 0.080 3.920 16 H 0.058 0.942 17 C -0.113 4.113 18 C 0.042 3.958 19 N -0.484 5.484 20 C -0.030 4.030 21 C -0.156 4.156 22 C -0.159 4.159 23 C 0.044 3.956 24 H 0.079 0.921 25 H 0.054 0.946 26 H 0.032 0.968 27 H 0.103 0.897 28 H 0.066 0.934 29 H 0.395 0.605 30 H 0.278 0.722 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.036 0.964 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.915 -15.359 -10.861 19.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.255 5.255 3 C -0.074 4.074 4 C 0.229 3.771 5 O -0.499 6.499 6 N -0.211 5.211 7 C -0.463 4.463 8 H 0.097 0.903 9 C -0.212 4.212 10 N -0.562 5.562 11 Si 0.816 3.184 12 H -0.198 1.198 13 H -0.195 1.195 14 H -0.197 1.197 15 C -0.029 4.029 16 H 0.076 0.924 17 C -0.151 4.151 18 C -0.085 4.085 19 N -0.208 5.208 20 C -0.139 4.139 21 C -0.194 4.194 22 C -0.196 4.196 23 C -0.084 4.084 24 H 0.098 0.902 25 H 0.073 0.927 26 H 0.051 0.949 27 H 0.121 0.879 28 H 0.084 0.916 29 H 0.229 0.771 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.055 0.945 34 H 0.114 0.886 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.104 0.896 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.735 -15.838 -10.465 19.347 hybrid contribution -0.143 1.487 0.807 1.698 sum 3.592 -14.350 -9.658 17.666 Atomic orbital electron populations 1.22393 0.86508 1.02914 1.00034 1.61707 1.08976 1.11892 1.42914 1.21718 1.01836 0.89789 0.94103 1.20720 0.83767 0.82245 0.90352 1.90461 1.45124 1.65369 1.48989 1.41930 1.50024 1.11553 1.17641 1.19627 1.34499 0.96472 0.95733 0.90298 1.26033 0.96215 0.96585 1.02377 1.69672 1.38014 1.12718 1.35780 0.84995 0.78648 0.77294 0.77440 1.19761 1.19459 1.19663 1.22455 0.94243 0.94942 0.91221 0.92364 1.22385 0.97404 0.92238 1.03093 1.23056 0.90711 0.97121 0.97643 1.65268 1.00772 1.01920 1.52806 1.22677 0.90403 1.03066 0.97742 1.23081 0.97213 1.01132 0.97975 1.23080 1.03063 0.89973 1.03496 1.23110 0.94412 0.92089 0.98822 0.90234 0.92684 0.94945 0.87881 0.91605 0.77100 0.91299 0.90725 0.89282 0.94536 0.88585 0.90349 0.88325 0.87783 0.87557 0.88008 0.89621 0.94260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 8.87 127.69 1.13 2.08 16 2 N -0.53 -17.60 4.28 -896.34 -3.84 -21.44 16 3 C 0.06 2.05 5.26 85.56 0.45 2.50 16 4 C 0.44 21.47 7.41 87.66 0.65 22.12 16 5 O -0.61 -34.23 13.97 -3.06 -0.04 -34.28 16 6 N -0.57 -29.97 5.29 -306.99 -1.62 -31.59 16 7 C -0.33 -19.16 9.68 84.04 0.81 -18.35 16 8 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 9 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 10 N -0.92 -50.14 13.05 21.66 0.28 -49.85 16 11 Si 0.99 43.25 29.55 68.60 2.03 45.28 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 13 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 14 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 15 C 0.08 2.07 2.77 45.81 0.13 2.19 16 16 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 17 C -0.11 -2.47 6.20 31.49 0.20 -2.28 16 18 C 0.04 0.89 6.21 86.42 0.54 1.42 16 19 N -0.48 -10.95 5.53 -855.90 -4.73 -15.68 16 20 C -0.03 -0.61 5.09 44.92 0.23 -0.39 16 21 C -0.16 -2.64 10.46 30.62 0.32 -2.32 16 22 C -0.16 -2.51 10.09 30.62 0.31 -2.20 16 23 C 0.04 1.13 4.73 86.45 0.41 1.54 16 24 H 0.08 2.25 6.67 -2.38 -0.02 2.23 16 25 H 0.05 2.23 5.78 -2.39 -0.01 2.22 16 26 H 0.03 0.91 8.12 -2.39 -0.02 0.89 16 27 H 0.10 3.40 6.55 -2.39 -0.02 3.38 16 28 H 0.07 2.15 8.12 -2.39 -0.02 2.13 16 29 H 0.40 19.66 7.90 -92.71 -0.73 18.92 16 30 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 31 H 0.07 1.78 6.59 -2.39 -0.02 1.77 16 32 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.04 0.85 8.00 -2.39 -0.02 0.83 16 34 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.08 1.81 7.88 -2.39 -0.02 1.79 16 36 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.04 1.18 7.38 -2.39 -0.02 1.16 16 Total: -1.00 -65.54 328.86 -2.00 -67.54 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: 0.29 Total: 33.92 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 5.64 Total: 6.11 kcal Atomic # 7 Polarization: -108.66 SS G_CDS: -9.91 Total: -118.57 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -0.04 Total: -34.28 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -65.54 -2.00 -67.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348178405.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.515 kcal (2) G-P(sol) polarization free energy of solvation -65.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds