Wall clock time and date at job start Mon Mar 30 2020 04:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 111.00401 * 2 1 4 4 C 1.50699 * 109.47081 * 293.95260 * 3 2 1 5 5 O 1.21296 * 119.99668 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00174 * 179.97438 * 4 3 2 7 7 C 1.37092 * 120.00179 * 180.02562 * 6 4 3 8 8 H 1.08000 * 120.00259 * 0.02562 * 7 6 4 9 9 C 1.38953 * 120.00105 * 180.02562 * 7 6 4 10 10 N 1.31413 * 119.99939 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99990 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47391 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47146 * 119.99763 * 11 9 7 14 14 H 1.48498 * 109.47090 * 239.99911 * 11 9 7 15 15 C 1.46907 * 110.99919 * 123.95300 * 2 1 3 16 16 H 1.08999 * 110.62868 * 296.96575 * 15 2 1 17 17 C 1.55147 * 110.70238 * 60.25915 * 15 2 1 18 18 C 1.54908 * 101.64988 * 154.03908 * 17 15 2 19 19 N 1.47851 * 104.79403 * 322.92505 * 18 17 15 20 20 C 1.46905 * 110.99681 * 146.36490 * 19 18 17 21 21 C 1.53003 * 117.49619 * 122.90688 * 20 19 18 22 22 C 1.53002 * 117.49665 * 54.24519 * 20 19 18 23 23 C 1.47439 * 108.56559 * 24.10351 * 19 18 17 24 24 H 1.09004 * 109.46894 * 65.77548 * 1 2 3 25 25 H 1.08995 * 109.47515 * 185.77922 * 1 2 3 26 26 H 1.09005 * 109.47100 * 305.77873 * 1 2 3 27 27 H 1.09002 * 109.47221 * 173.95175 * 3 2 1 28 28 H 1.09005 * 109.47202 * 53.95495 * 3 2 1 29 29 H 0.97007 * 119.99593 * 0.02562 * 6 4 3 30 30 H 0.96996 * 119.99542 * 180.02562 * 10 9 7 31 31 H 1.08997 * 110.98960 * 272.12483 * 17 15 2 32 32 H 1.08999 * 110.98960 * 35.94526 * 17 15 2 33 33 H 1.08999 * 110.37040 * 204.10412 * 18 17 15 34 34 H 1.08989 * 110.47209 * 81.80226 * 18 17 15 35 35 H 1.08998 * 115.55340 * 268.57865 * 20 19 18 36 36 H 1.09003 * 117.49853 * 359.97438 * 21 20 19 37 37 H 1.08993 * 117.49908 * 145.02269 * 21 20 19 38 38 H 1.08993 * 117.49807 * 214.97653 * 22 20 19 39 39 H 1.08999 * 117.50210 * 359.97438 * 22 20 19 40 40 H 1.09007 * 109.88272 * 239.59826 * 23 19 18 41 41 H 1.09000 * 109.89206 * 118.41339 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0471 -1.2985 5 8 1.0047 1.4455 -2.1408 6 7 2.0182 3.3201 -1.5234 7 6 1.6917 3.9350 -2.7043 8 1 1.1287 3.3994 -3.4544 9 6 2.0851 5.2473 -2.9364 10 7 2.7698 5.8992 -2.0236 11 14 1.6408 6.0848 -4.5459 12 1 0.8736 5.1422 -5.3992 13 1 0.8135 7.2861 -4.2670 14 1 2.8825 6.4918 -5.2514 15 6 1.9954 -0.7660 1.1377 16 1 1.7012 -0.3046 2.0803 17 6 1.5198 -2.2413 1.0726 18 6 2.6429 -2.9668 1.8549 19 7 3.8839 -2.2559 1.4802 20 6 4.8313 -2.2234 2.6025 21 6 6.2225 -2.8164 2.3700 22 6 5.2102 -3.5589 3.2460 23 6 3.5308 -0.8914 1.0473 24 1 -0.3633 0.4217 -0.9372 25 1 -0.3634 -1.0224 0.1035 26 1 -0.3633 0.6009 0.8338 27 1 3.0798 1.3443 0.1083 28 1 1.5612 1.9274 0.8310 29 1 2.5236 3.8013 -0.8495 30 1 3.0440 6.8154 -2.1855 31 1 0.5570 -2.3634 1.5686 32 1 1.4733 -2.5915 0.0414 33 1 2.6996 -4.0131 1.5546 34 1 2.4708 -2.8897 2.9284 35 1 4.7577 -1.3534 3.2549 36 1 6.4346 -3.2309 1.3844 37 1 7.0640 -2.3367 2.8697 38 1 5.3862 -3.5672 4.3216 39 1 4.7562 -4.4614 2.8369 40 1 3.8560 -0.7329 0.0191 41 1 4.0018 -0.1603 1.7044 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348178407.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:30 Heat of formation + Delta-G solvation = 10.472844 kcal Electronic energy + Delta-G solvation = -20541.684389 eV Core-core repulsion = 17457.727597 eV Total energy + Delta-G solvation = -3083.956792 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.72289 -38.32275 -36.78853 -34.70949 -33.72354 -31.22568 -30.00864 -28.55652 -27.69310 -24.88838 -23.42434 -22.69663 -22.11114 -20.37504 -20.00950 -19.02627 -17.80247 -16.83792 -16.34316 -15.90400 -15.10072 -14.67502 -14.52246 -14.13458 -13.99101 -13.60720 -13.40064 -13.29303 -12.99373 -12.52775 -12.21053 -11.97416 -11.74080 -11.57294 -11.47911 -11.22245 -11.19186 -10.96541 -10.88239 -10.74755 -10.51595 -10.32276 -10.25625 -10.19888 -9.46523 -8.47753 -8.34263 -7.95181 -7.81042 -6.39395 -3.79905 3.18035 3.28440 3.35765 3.56855 3.70757 3.93432 4.03089 4.26860 4.52837 4.70611 4.75062 4.86593 4.95162 5.09090 5.22096 5.27879 5.29623 5.36665 5.41421 5.47936 5.62863 5.66923 5.74623 5.78379 5.82592 5.86002 5.95488 6.01203 6.02573 6.15145 6.19951 6.32233 6.60127 6.84343 7.03976 7.29655 7.45077 7.57905 8.09446 8.64845 9.21042 9.57444 10.09591 10.78573 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.030426 B = 0.003723 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.034172 B = 7519.833831 C = 8152.026333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.506 5.506 3 C 0.044 3.956 4 C 0.446 3.554 5 O -0.577 6.577 6 N -0.566 5.566 7 C -0.297 4.297 8 H 0.104 0.896 9 C 0.021 3.979 10 N -0.903 5.903 11 Si 0.929 3.071 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.061 3.939 16 H 0.042 0.958 17 C -0.120 4.120 18 C 0.047 3.953 19 N -0.499 5.499 20 C 0.000 4.000 21 C -0.163 4.163 22 C -0.179 4.179 23 C 0.052 3.948 24 H 0.097 0.903 25 H 0.059 0.941 26 H 0.013 0.987 27 H 0.088 0.912 28 H 0.045 0.955 29 H 0.391 0.609 30 H 0.270 0.730 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.046 0.954 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.623 -14.264 12.377 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.230 5.230 3 C -0.088 4.088 4 C 0.231 3.769 5 O -0.460 6.460 6 N -0.202 5.202 7 C -0.426 4.426 8 H 0.121 0.879 9 C -0.180 4.180 10 N -0.544 5.544 11 Si 0.756 3.244 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.208 1.208 15 C -0.049 4.049 16 H 0.060 0.940 17 C -0.158 4.158 18 C -0.080 4.080 19 N -0.223 5.223 20 C -0.109 4.109 21 C -0.201 4.201 22 C -0.217 4.217 23 C -0.076 4.076 24 H 0.115 0.885 25 H 0.078 0.922 26 H 0.032 0.968 27 H 0.106 0.894 28 H 0.063 0.937 29 H 0.225 0.775 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.665 -14.960 10.955 18.732 hybrid contribution -0.434 1.758 1.190 2.167 sum 2.230 -13.202 12.145 18.076 Atomic orbital electron populations 1.22548 0.86604 1.00739 1.02623 1.61703 1.08600 1.12600 1.40068 1.21920 1.00783 0.88942 0.97139 1.19714 0.85381 0.82899 0.88883 1.90480 1.43814 1.64622 1.47125 1.41869 1.49536 1.10755 1.18078 1.19748 1.32731 0.95421 0.94746 0.87862 1.25256 0.96879 0.96664 0.99212 1.69622 1.38239 1.12170 1.34401 0.85806 0.78199 0.79000 0.81383 1.19215 1.20829 1.20760 1.22901 0.95176 0.94548 0.92258 0.94000 1.22769 0.97315 0.93679 1.02055 1.22967 0.88351 0.98799 0.97905 1.63408 1.11696 1.15272 1.31890 1.22708 0.96228 0.96746 0.95214 1.23069 0.92165 1.03359 1.01494 1.23054 1.04263 0.95660 0.98675 1.22938 0.93756 0.88321 1.02546 0.88458 0.92174 0.96805 0.89396 0.93663 0.77547 0.91978 0.91090 0.89218 0.90315 0.93557 0.89226 0.88081 0.88889 0.88927 0.88459 0.88695 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.07 60.06 0.54 0.92 16 2 N -0.51 -8.60 4.32 -234.13 -1.01 -9.61 16 3 C 0.04 0.80 5.30 -4.98 -0.03 0.77 16 4 C 0.45 10.64 7.54 -10.99 -0.08 10.56 16 5 O -0.58 -15.62 13.88 5.54 0.08 -15.54 16 6 N -0.57 -14.47 5.29 -10.96 -0.06 -14.53 16 7 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 9 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 10 N -0.90 -24.73 13.05 55.50 0.72 -24.00 16 11 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 C 0.06 0.83 2.64 -65.88 -0.17 0.66 16 16 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 17 C -0.12 -1.41 5.36 -24.59 -0.13 -1.54 16 18 C 0.05 0.50 6.02 -2.29 -0.01 0.49 16 19 N -0.50 -6.02 5.34 -223.29 -1.19 -7.21 16 20 C 0.00 0.00 5.07 -67.71 -0.34 -0.34 16 21 C -0.16 -1.52 10.46 -26.69 -0.28 -1.79 16 22 C -0.18 -1.53 9.83 -26.69 -0.26 -1.79 16 23 C 0.05 0.69 5.32 -2.84 -0.02 0.68 16 24 H 0.10 1.94 6.00 -51.93 -0.31 1.63 16 25 H 0.06 0.84 6.67 -51.93 -0.35 0.50 16 26 H 0.01 0.21 8.07 -51.93 -0.42 -0.21 16 27 H 0.09 1.48 6.78 -51.93 -0.35 1.13 16 28 H 0.05 0.77 8.06 -51.93 -0.42 0.35 16 29 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 30 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.07 0.73 7.87 -51.93 -0.41 0.32 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.45 7.79 -51.94 -0.40 0.05 16 35 H 0.09 0.91 7.66 -51.93 -0.40 0.51 16 36 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.10 0.83 7.95 -51.93 -0.41 0.42 16 40 H 0.09 1.48 7.78 -51.92 -0.40 1.07 16 41 H 0.05 0.67 7.30 -51.93 -0.38 0.30 16 LS Contribution 328.67 15.07 4.95 4.95 Total: -1.00 -30.51 328.67 -9.18 -39.69 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -6.62 Total: 9.48 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -1.02 Total: 0.61 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: -1.54 Total: -55.35 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: 0.08 Total: -15.54 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.51 -9.18 -39.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348178407.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.162 kcal (2) G-P(sol) polarization free energy of solvation -30.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds