Wall clock time and date at job start Mon Mar 30 2020 04:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 111.00401 * 2 1 4 4 C 1.50699 * 109.47081 * 293.95260 * 3 2 1 5 5 O 1.21296 * 119.99668 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00174 * 179.97438 * 4 3 2 7 7 C 1.37092 * 120.00179 * 180.02562 * 6 4 3 8 8 H 1.08000 * 120.00259 * 0.02562 * 7 6 4 9 9 C 1.38953 * 120.00105 * 180.02562 * 7 6 4 10 10 N 1.31413 * 119.99939 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99990 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47391 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47146 * 119.99763 * 11 9 7 14 14 H 1.48498 * 109.47090 * 239.99911 * 11 9 7 15 15 C 1.46907 * 110.99919 * 123.95300 * 2 1 3 16 16 H 1.08999 * 110.62868 * 296.96575 * 15 2 1 17 17 C 1.55147 * 110.70238 * 60.25915 * 15 2 1 18 18 C 1.54908 * 101.64988 * 154.03908 * 17 15 2 19 19 N 1.47851 * 104.79403 * 322.92505 * 18 17 15 20 20 C 1.46905 * 110.99681 * 146.36490 * 19 18 17 21 21 C 1.53003 * 117.49619 * 122.90688 * 20 19 18 22 22 C 1.53002 * 117.49665 * 54.24519 * 20 19 18 23 23 C 1.47439 * 108.56559 * 24.10351 * 19 18 17 24 24 H 1.09004 * 109.46894 * 65.77548 * 1 2 3 25 25 H 1.08995 * 109.47515 * 185.77922 * 1 2 3 26 26 H 1.09005 * 109.47100 * 305.77873 * 1 2 3 27 27 H 1.09002 * 109.47221 * 173.95175 * 3 2 1 28 28 H 1.09005 * 109.47202 * 53.95495 * 3 2 1 29 29 H 0.97007 * 119.99593 * 0.02562 * 6 4 3 30 30 H 0.96996 * 119.99542 * 180.02562 * 10 9 7 31 31 H 1.08997 * 110.98960 * 272.12483 * 17 15 2 32 32 H 1.08999 * 110.98960 * 35.94526 * 17 15 2 33 33 H 1.08999 * 110.37040 * 204.10412 * 18 17 15 34 34 H 1.08989 * 110.47209 * 81.80226 * 18 17 15 35 35 H 1.08998 * 115.55340 * 268.57865 * 20 19 18 36 36 H 1.09003 * 117.49853 * 359.97438 * 21 20 19 37 37 H 1.08993 * 117.49908 * 145.02269 * 21 20 19 38 38 H 1.08993 * 117.49807 * 214.97653 * 22 20 19 39 39 H 1.08999 * 117.50210 * 359.97438 * 22 20 19 40 40 H 1.09007 * 109.88272 * 239.59826 * 23 19 18 41 41 H 1.09000 * 109.89206 * 118.41339 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0471 -1.2985 5 8 1.0047 1.4455 -2.1408 6 7 2.0182 3.3201 -1.5234 7 6 1.6917 3.9350 -2.7043 8 1 1.1287 3.3994 -3.4544 9 6 2.0851 5.2473 -2.9364 10 7 2.7698 5.8992 -2.0236 11 14 1.6408 6.0848 -4.5459 12 1 0.8736 5.1422 -5.3992 13 1 0.8135 7.2861 -4.2670 14 1 2.8825 6.4918 -5.2514 15 6 1.9954 -0.7660 1.1377 16 1 1.7012 -0.3046 2.0803 17 6 1.5198 -2.2413 1.0726 18 6 2.6429 -2.9668 1.8549 19 7 3.8839 -2.2559 1.4802 20 6 4.8313 -2.2234 2.6025 21 6 6.2225 -2.8164 2.3700 22 6 5.2102 -3.5589 3.2460 23 6 3.5308 -0.8914 1.0473 24 1 -0.3633 0.4217 -0.9372 25 1 -0.3634 -1.0224 0.1035 26 1 -0.3633 0.6009 0.8338 27 1 3.0798 1.3443 0.1083 28 1 1.5612 1.9274 0.8310 29 1 2.5236 3.8013 -0.8495 30 1 3.0440 6.8154 -2.1855 31 1 0.5570 -2.3634 1.5686 32 1 1.4733 -2.5915 0.0414 33 1 2.6996 -4.0131 1.5546 34 1 2.4708 -2.8897 2.9284 35 1 4.7577 -1.3534 3.2549 36 1 6.4346 -3.2309 1.3844 37 1 7.0640 -2.3367 2.8697 38 1 5.3862 -3.5672 4.3216 39 1 4.7562 -4.4614 2.8369 40 1 3.8560 -0.7329 0.0191 41 1 4.0018 -0.1603 1.7044 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348178407.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:29 Heat of formation + Delta-G solvation = -11.952215 kcal Electronic energy + Delta-G solvation = -20542.656812 eV Core-core repulsion = 17457.727597 eV Total energy + Delta-G solvation = -3084.929215 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.85747 -39.93406 -37.94418 -36.10026 -35.44959 -33.27999 -31.04773 -29.62321 -29.17111 -26.72827 -24.82662 -23.47133 -22.95094 -21.35078 -21.19883 -20.70281 -19.82479 -18.05053 -17.35431 -17.33103 -16.58096 -16.24582 -16.03616 -15.62765 -15.23100 -15.14733 -14.61972 -14.36282 -14.22866 -13.77368 -13.59188 -13.34184 -13.15705 -12.98451 -12.74933 -12.46159 -12.40596 -12.37151 -12.17440 -12.11372 -11.86898 -11.85395 -11.46795 -11.27732 -11.01346 -10.29037 -10.00013 -9.31434 -9.16387 -8.46276 -5.94778 1.36621 1.41761 1.56103 2.05183 2.28215 2.65369 2.85211 2.98047 3.20340 3.38244 3.58761 3.78694 4.01039 4.07905 4.14093 4.20008 4.28965 4.32582 4.41777 4.43819 4.48724 4.57841 4.59297 4.69682 4.82187 4.84186 4.93262 4.96627 5.03749 5.11698 5.19045 5.26432 5.33577 5.41906 5.86997 5.95323 6.05729 6.18802 6.25403 6.61224 7.13680 7.56610 8.12779 8.71513 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.030426 B = 0.003723 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.034172 B = 7519.833831 C = 8152.026333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.525 5.525 3 C 0.057 3.943 4 C 0.443 3.557 5 O -0.613 6.613 6 N -0.575 5.575 7 C -0.331 4.331 8 H 0.079 0.921 9 C -0.014 4.014 10 N -0.921 5.921 11 Si 0.993 3.007 12 H -0.273 1.273 13 H -0.270 1.270 14 H -0.271 1.271 15 C 0.063 3.937 16 H 0.056 0.944 17 C -0.115 4.115 18 C 0.053 3.947 19 N -0.513 5.513 20 C -0.016 4.016 21 C -0.168 4.168 22 C -0.162 4.162 23 C 0.057 3.943 24 H 0.056 0.944 25 H 0.084 0.916 26 H 0.025 0.975 27 H 0.104 0.896 28 H 0.065 0.935 29 H 0.395 0.605 30 H 0.277 0.723 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.065 0.935 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.916 -14.817 14.030 20.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.250 5.250 3 C -0.074 4.074 4 C 0.230 3.770 5 O -0.499 6.499 6 N -0.212 5.212 7 C -0.461 4.461 8 H 0.097 0.903 9 C -0.213 4.213 10 N -0.563 5.563 11 Si 0.817 3.183 12 H -0.198 1.198 13 H -0.196 1.196 14 H -0.196 1.196 15 C -0.046 4.046 16 H 0.074 0.926 17 C -0.154 4.154 18 C -0.074 4.074 19 N -0.237 5.237 20 C -0.125 4.125 21 C -0.206 4.206 22 C -0.199 4.199 23 C -0.072 4.072 24 H 0.075 0.925 25 H 0.103 0.897 26 H 0.044 0.956 27 H 0.122 0.878 28 H 0.083 0.917 29 H 0.229 0.771 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.116 0.884 40 H 0.084 0.916 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.972 -15.523 12.639 20.237 hybrid contribution -0.505 1.858 0.697 2.047 sum 2.467 -13.665 13.335 19.252 Atomic orbital electron populations 1.22419 0.86505 1.02153 1.00866 1.61632 1.08910 1.11898 1.42538 1.21753 1.01868 0.89662 0.94093 1.20715 0.83744 0.82226 0.90328 1.90460 1.45077 1.65327 1.49013 1.41933 1.50098 1.11530 1.17676 1.19693 1.34293 0.96410 0.95668 0.90335 1.26035 0.96270 0.96605 1.02392 1.69681 1.38220 1.12644 1.35710 0.84870 0.78257 0.77874 0.77330 1.19811 1.19561 1.19628 1.22965 0.95238 0.95081 0.91308 0.92598 1.22750 0.98809 0.92304 1.01499 1.22981 0.87124 0.98817 0.98521 1.63348 1.12654 1.14404 1.33299 1.22787 0.96356 0.98094 0.95251 1.23113 0.92393 1.03695 1.01417 1.23117 1.02705 0.94551 0.99528 1.22787 0.93634 0.89579 1.01157 0.92497 0.89737 0.95601 0.87819 0.91719 0.77112 0.91334 0.89138 0.91058 0.89489 0.92050 0.88817 0.89306 0.87655 0.87084 0.88413 0.91630 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 9.07 127.69 1.16 2.08 16 2 N -0.53 -17.54 4.32 -894.64 -3.87 -21.41 16 3 C 0.06 2.08 5.30 85.56 0.45 2.53 16 4 C 0.44 21.63 7.54 87.66 0.66 22.29 16 5 O -0.61 -34.48 13.88 -3.08 -0.04 -34.52 16 6 N -0.57 -30.13 5.29 -306.98 -1.62 -31.75 16 7 C -0.33 -19.09 9.68 84.04 0.81 -18.28 16 8 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 9 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 10 N -0.92 -50.26 13.05 21.66 0.28 -49.98 16 11 Si 0.99 43.47 29.55 68.60 2.03 45.50 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 13 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 14 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 15 C 0.06 1.60 2.64 46.10 0.12 1.72 16 16 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 17 C -0.12 -2.47 5.36 31.98 0.17 -2.30 16 18 C 0.05 0.98 6.02 86.77 0.52 1.50 16 19 N -0.51 -11.56 5.34 -860.35 -4.59 -16.16 16 20 C -0.02 -0.30 5.07 44.92 0.23 -0.07 16 21 C -0.17 -2.84 10.46 30.62 0.32 -2.52 16 22 C -0.16 -2.32 9.83 30.62 0.30 -2.02 16 23 C 0.06 1.45 5.32 86.65 0.46 1.91 16 24 H 0.06 2.33 6.00 -2.39 -0.01 2.31 16 25 H 0.08 2.26 6.67 -2.39 -0.02 2.25 16 26 H 0.03 0.76 8.07 -2.38 -0.02 0.74 16 27 H 0.10 3.42 6.78 -2.39 -0.02 3.41 16 28 H 0.06 2.11 8.06 -2.38 -0.02 2.09 16 29 H 0.40 19.70 7.90 -92.70 -0.73 18.96 16 30 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 31 H 0.09 1.58 7.87 -2.39 -0.02 1.56 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.06 0.98 7.79 -2.39 -0.02 0.96 16 35 H 0.09 1.67 7.66 -2.39 -0.02 1.65 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.10 1.41 7.95 -2.39 -0.02 1.39 16 40 H 0.07 2.05 7.78 -2.38 -0.02 2.04 16 41 H 0.06 1.45 7.30 -2.39 -0.02 1.44 16 Total: -1.00 -66.70 328.67 -1.85 -68.55 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: 0.29 Total: 33.18 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 5.68 Total: 6.59 kcal Atomic # 7 Polarization: -109.50 SS G_CDS: -9.80 Total: -119.30 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -0.04 Total: -34.52 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -66.70 -1.85 -68.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348178407.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.598 kcal (2) G-P(sol) polarization free energy of solvation -66.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds