Wall clock time and date at job start Mon Mar 30 2020 05:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00055 * 2 1 4 4 H 1.48504 * 109.47378 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47256 * 299.99889 * 3 2 1 6 6 H 1.48501 * 109.47224 * 60.00365 * 3 2 1 7 7 C 1.37879 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99947 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99997 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47297 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47246 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46742 * 180.02562 * 11 10 9 13 13 N 1.46906 * 109.46511 * 180.02562 * 12 11 10 14 14 C 1.46947 * 111.00240 * 293.79823 * 13 12 11 15 15 C 1.53049 * 109.36484 * 176.81255 * 14 13 12 16 16 N 1.46954 * 109.36410 * 58.40553 * 15 14 13 17 17 C 1.46901 * 111.00309 * 176.81134 * 16 15 14 18 18 C 1.53935 * 113.73339 * 287.81739 * 17 16 15 19 19 N 1.47956 * 86.18232 * 221.91883 * 18 17 16 20 20 C 1.47965 * 90.76053 * 24.68840 * 19 18 17 21 21 C 1.46957 * 110.87973 * 300.68017 * 16 15 14 22 22 C 1.46965 * 110.99435 * 170.00204 * 13 12 11 23 23 H 0.97001 * 119.99821 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47005 * 60.00807 * 9 7 2 25 25 H 1.08990 * 109.47587 * 300.00532 * 9 7 2 26 26 H 1.09003 * 109.46952 * 300.00516 * 10 9 7 27 27 H 1.08997 * 109.46509 * 59.99855 * 10 9 7 28 28 H 1.08998 * 109.46882 * 300.00511 * 11 10 9 29 29 H 1.09000 * 109.46921 * 60.00204 * 11 10 9 30 30 H 1.08995 * 109.47235 * 299.99830 * 12 11 10 31 31 H 1.09000 * 109.47359 * 60.00333 * 12 11 10 32 32 H 1.08998 * 109.49065 * 296.78237 * 14 13 12 33 33 H 1.08998 * 109.48754 * 56.84774 * 14 13 12 34 34 H 1.08996 * 109.49142 * 298.43201 * 15 14 13 35 35 H 1.09007 * 109.48824 * 178.36712 * 15 14 13 36 36 H 1.08997 * 112.93521 * 59.51870 * 17 16 15 37 37 H 1.09007 * 113.75819 * 336.23806 * 18 17 16 38 38 H 1.09004 * 113.76406 * 107.59748 * 18 17 16 39 39 H 1.00897 * 111.00245 * 137.57962 * 19 18 17 40 40 H 1.09002 * 113.75630 * 220.98939 * 20 19 18 41 41 H 1.09002 * 113.75592 * 89.63347 * 20 19 18 42 42 H 1.09007 * 109.48840 * 299.35027 * 21 16 15 43 43 H 1.08998 * 109.49039 * 179.28774 * 21 16 15 44 44 H 1.08999 * 109.48873 * 303.14964 * 22 13 12 45 45 H 1.08990 * 109.48921 * 63.22379 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6622 -0.0005 11 6 1.4803 -4.9872 -0.0012 12 6 2.4746 -6.1500 -0.0005 13 7 1.7400 -7.4222 -0.0018 14 6 0.9959 -7.6019 1.2526 15 6 0.1834 -8.8969 1.1796 16 7 1.0905 -10.0285 0.9420 17 6 0.3560 -11.3007 0.9407 18 6 -0.1213 -11.7419 2.3360 19 7 0.3051 -13.1031 1.9428 20 6 1.2663 -12.5417 0.9680 21 6 1.8347 -9.8488 -0.3124 22 6 2.6472 -8.5538 -0.2394 23 1 -0.4850 0.8401 -0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8895 26 1 2.8720 -3.6044 -0.8905 27 1 2.8719 -3.6043 0.8894 28 1 0.8533 -5.0451 0.8885 29 1 0.8540 -5.0446 -0.8914 30 1 3.1019 -6.0922 -0.8900 31 1 3.1006 -6.0924 0.8899 32 1 1.6962 -7.6585 2.0859 33 1 0.3223 -6.7578 1.3999 34 1 -0.5356 -8.8295 0.3632 35 1 -0.3467 -9.0471 2.1201 36 1 -0.4199 -11.3425 0.1763 37 1 0.4616 -11.3182 3.1539 38 1 -1.1969 -11.6441 2.4836 39 1 0.7861 -13.5643 2.7004 40 1 1.2995 -13.0830 0.0225 41 1 2.2551 -12.3520 1.3858 42 1 1.1344 -9.7922 -1.1459 43 1 2.5083 -10.6929 -0.4598 44 1 3.1772 -8.4036 -1.1799 45 1 3.3661 -8.6211 0.5769 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385188259.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:22 Heat of formation + Delta-G solvation = 28.000359 kcal Electronic energy + Delta-G solvation = -20324.694366 eV Core-core repulsion = 17377.330719 eV Total energy + Delta-G solvation = -2947.363647 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.29817 -38.57452 -35.61712 -33.88830 -32.11256 -31.10358 -29.17389 -27.20682 -26.46201 -25.17464 -23.74900 -23.44523 -21.21503 -19.99696 -19.95834 -19.79515 -17.51933 -16.21179 -16.18779 -15.42964 -15.32859 -15.13424 -14.57992 -14.47429 -14.40313 -13.69528 -13.67697 -13.42850 -12.92570 -12.59281 -12.40004 -12.04014 -11.83771 -11.70526 -11.45820 -11.38171 -11.25471 -10.96702 -10.78394 -10.75531 -10.47335 -10.41834 -10.28199 -9.59024 -9.37979 -9.23869 -8.97863 -8.67201 -8.32005 -8.26160 -5.96724 -3.98725 3.32473 3.39740 3.44035 3.50067 3.78735 3.91454 4.03388 4.48622 4.69150 4.73446 4.93529 4.98200 5.01988 5.09026 5.19998 5.28628 5.33822 5.36255 5.38818 5.40247 5.46491 5.56966 5.61257 5.64307 5.69878 5.78392 5.86492 5.92984 5.94974 6.17802 6.26209 6.54151 6.73595 6.75823 6.80468 6.83963 6.99355 7.10120 7.13869 7.27052 7.72911 7.88726 8.04697 8.47639 9.09092 9.65095 11.14692 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.055176 B = 0.002621 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.340724 B =10679.757026 C =10984.605710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.113 4.113 12 C 0.057 3.943 13 N -0.541 5.541 14 C 0.055 3.945 15 C 0.058 3.942 16 N -0.532 5.532 17 C 0.049 3.951 18 C 0.016 3.984 19 N -0.638 5.638 20 C 0.015 3.985 21 C 0.059 3.941 22 C 0.057 3.943 23 H 0.259 0.741 24 H 0.015 0.985 25 H 0.014 0.986 26 H 0.046 0.954 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.031 0.969 32 H 0.039 0.961 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.322 0.678 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.043 0.957 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.572 -24.962 2.716 25.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.151 4.151 12 C -0.070 4.070 13 N -0.266 5.266 14 C -0.074 4.074 15 C -0.070 4.070 16 N -0.258 5.258 17 C -0.060 4.060 18 C -0.114 4.114 19 N -0.263 5.263 20 C -0.115 4.115 21 C -0.069 4.069 22 C -0.072 4.072 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.032 0.968 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.106 0.894 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.134 0.866 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.062 0.938 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.780 -25.208 2.265 25.372 hybrid contribution 1.184 1.401 0.540 1.912 sum 2.965 -23.807 2.806 24.155 Atomic orbital electron populations 1.69979 1.06044 1.26391 1.51169 1.25041 0.94849 0.99247 0.95470 0.86557 0.80117 0.83902 0.77550 1.19778 1.21027 1.21053 1.21330 0.93046 0.91208 1.50115 0.92732 1.19091 0.94028 0.91356 0.97127 1.21598 0.99085 0.94004 1.00036 1.21664 0.97866 0.93601 1.01961 1.22219 0.95937 0.88376 1.00443 1.62199 1.27645 1.02244 1.34480 1.22198 0.97473 0.97068 0.90617 1.22138 0.94119 0.89635 1.01081 1.62482 1.27021 1.01561 1.34757 1.23574 0.95820 0.88864 0.97709 1.23759 1.01773 0.89360 0.96532 1.66848 1.29821 1.15154 1.14449 1.23760 0.95528 0.93965 0.98267 1.22107 0.97076 0.97375 0.90371 1.22128 0.94079 0.89934 1.01012 0.93116 0.96629 0.96760 0.93490 0.93706 0.92631 0.91749 0.91033 0.95074 0.94251 0.89438 0.93758 0.90413 0.90858 0.90593 0.89559 0.86576 0.89642 0.90689 0.93846 0.90564 0.90335 0.94317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 11 C -0.11 -1.95 5.15 -26.73 -0.14 -2.09 16 12 C 0.06 0.83 4.96 -3.82 -0.02 0.81 16 13 N -0.54 -7.04 4.71 -234.47 -1.10 -8.15 16 14 C 0.05 0.66 5.41 -3.77 -0.02 0.64 16 15 C 0.06 0.61 5.54 -3.77 -0.02 0.59 16 16 N -0.53 -5.13 4.65 -227.89 -1.06 -6.19 16 17 C 0.05 0.42 3.34 -69.41 -0.23 0.19 16 18 C 0.02 0.13 8.06 -2.77 -0.02 0.10 16 19 N -0.64 -4.98 8.53 -117.15 -1.00 -5.98 16 20 C 0.02 0.11 7.81 -2.77 -0.02 0.09 16 21 C 0.06 0.56 5.51 -3.77 -0.02 0.54 16 22 C 0.06 0.62 5.61 -3.76 -0.02 0.60 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.96 6.49 -51.93 -0.34 0.62 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.07 1.00 8.03 -51.93 -0.42 0.58 16 31 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 1.13 6.34 -51.93 -0.33 0.80 16 34 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.72 7.65 -51.93 -0.40 0.32 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.32 2.04 8.91 -39.29 -0.35 1.69 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.62 7.47 -51.93 -0.39 0.23 16 44 H 0.08 0.79 8.07 -51.93 -0.42 0.38 16 45 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 349.24 15.07 5.26 5.26 Total: -1.00 -30.64 349.24 -11.91 -42.55 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -8.52 Total: -3.44 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -1.20 Total: -14.31 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: -2.43 Total: -46.98 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.64 -11.91 -42.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385188259.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.547 kcal (2) G-P(sol) polarization free energy of solvation -30.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds