Wall clock time and date at job start Mon Mar 30 2020 05:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00055 * 2 1 4 4 H 1.48504 * 109.47378 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47256 * 299.99889 * 3 2 1 6 6 H 1.48501 * 109.47224 * 60.00365 * 3 2 1 7 7 C 1.37879 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99947 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99997 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47297 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47246 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46742 * 180.02562 * 11 10 9 13 13 N 1.46906 * 109.46511 * 180.02562 * 12 11 10 14 14 C 1.46947 * 111.00240 * 293.79823 * 13 12 11 15 15 C 1.53049 * 109.36484 * 176.81255 * 14 13 12 16 16 N 1.46954 * 109.36410 * 58.40553 * 15 14 13 17 17 C 1.46901 * 111.00309 * 176.81134 * 16 15 14 18 18 C 1.53935 * 113.73339 * 287.81739 * 17 16 15 19 19 N 1.47956 * 86.18232 * 221.91883 * 18 17 16 20 20 C 1.47965 * 90.76053 * 24.68840 * 19 18 17 21 21 C 1.46957 * 110.87973 * 300.68017 * 16 15 14 22 22 C 1.46965 * 110.99435 * 170.00204 * 13 12 11 23 23 H 0.97001 * 119.99821 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47005 * 60.00807 * 9 7 2 25 25 H 1.08990 * 109.47587 * 300.00532 * 9 7 2 26 26 H 1.09003 * 109.46952 * 300.00516 * 10 9 7 27 27 H 1.08997 * 109.46509 * 59.99855 * 10 9 7 28 28 H 1.08998 * 109.46882 * 300.00511 * 11 10 9 29 29 H 1.09000 * 109.46921 * 60.00204 * 11 10 9 30 30 H 1.08995 * 109.47235 * 299.99830 * 12 11 10 31 31 H 1.09000 * 109.47359 * 60.00333 * 12 11 10 32 32 H 1.08998 * 109.49065 * 296.78237 * 14 13 12 33 33 H 1.08998 * 109.48754 * 56.84774 * 14 13 12 34 34 H 1.08996 * 109.49142 * 298.43201 * 15 14 13 35 35 H 1.09007 * 109.48824 * 178.36712 * 15 14 13 36 36 H 1.08997 * 112.93521 * 59.51870 * 17 16 15 37 37 H 1.09007 * 113.75819 * 336.23806 * 18 17 16 38 38 H 1.09004 * 113.76406 * 107.59748 * 18 17 16 39 39 H 1.00897 * 111.00245 * 137.57962 * 19 18 17 40 40 H 1.09002 * 113.75630 * 220.98939 * 20 19 18 41 41 H 1.09002 * 113.75592 * 89.63347 * 20 19 18 42 42 H 1.09007 * 109.48840 * 299.35027 * 21 16 15 43 43 H 1.08998 * 109.49039 * 179.28774 * 21 16 15 44 44 H 1.08999 * 109.48873 * 303.14964 * 22 13 12 45 45 H 1.08990 * 109.48921 * 63.22379 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6622 -0.0005 11 6 1.4803 -4.9872 -0.0012 12 6 2.4746 -6.1500 -0.0005 13 7 1.7400 -7.4222 -0.0018 14 6 0.9959 -7.6019 1.2526 15 6 0.1834 -8.8969 1.1796 16 7 1.0905 -10.0285 0.9420 17 6 0.3560 -11.3007 0.9407 18 6 -0.1213 -11.7419 2.3360 19 7 0.3051 -13.1031 1.9428 20 6 1.2663 -12.5417 0.9680 21 6 1.8347 -9.8488 -0.3124 22 6 2.6472 -8.5538 -0.2394 23 1 -0.4850 0.8401 -0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8895 26 1 2.8720 -3.6044 -0.8905 27 1 2.8719 -3.6043 0.8894 28 1 0.8533 -5.0451 0.8885 29 1 0.8540 -5.0446 -0.8914 30 1 3.1019 -6.0922 -0.8900 31 1 3.1006 -6.0924 0.8899 32 1 1.6962 -7.6585 2.0859 33 1 0.3223 -6.7578 1.3999 34 1 -0.5356 -8.8295 0.3632 35 1 -0.3467 -9.0471 2.1201 36 1 -0.4199 -11.3425 0.1763 37 1 0.4616 -11.3182 3.1539 38 1 -1.1969 -11.6441 2.4836 39 1 0.7861 -13.5643 2.7004 40 1 1.2995 -13.0830 0.0225 41 1 2.2551 -12.3520 1.3858 42 1 1.1344 -9.7922 -1.1459 43 1 2.5083 -10.6929 -0.4598 44 1 3.1772 -8.4036 -1.1799 45 1 3.3661 -8.6211 0.5769 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385188259.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:21 Heat of formation + Delta-G solvation = 5.047428 kcal Electronic energy + Delta-G solvation = -20325.689680 eV Core-core repulsion = 17377.330719 eV Total energy + Delta-G solvation = -2948.358961 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.02306 -39.44548 -36.90842 -35.48438 -33.91924 -31.98604 -30.65798 -28.41744 -27.07875 -26.46348 -25.10531 -24.34464 -22.74303 -21.60114 -20.86232 -20.49454 -18.42891 -18.23518 -16.88632 -16.59879 -16.52982 -16.19477 -15.96102 -15.73142 -15.46907 -14.76755 -14.45676 -14.34380 -14.31400 -13.78463 -13.58005 -13.52127 -13.24638 -12.95795 -12.82298 -12.44868 -12.36305 -12.27679 -12.22787 -12.08974 -11.87795 -11.61889 -11.45915 -11.32170 -11.21428 -10.94087 -10.56167 -9.96127 -9.48021 -9.26003 -8.20161 -6.31528 1.39454 1.39882 1.53420 2.40676 2.76920 2.91384 3.12604 3.18170 3.39231 3.86780 3.94711 4.07199 4.13697 4.20020 4.33443 4.37307 4.40249 4.45752 4.47955 4.53898 4.55861 4.66434 4.75928 4.77484 4.79560 4.84112 4.88430 4.91876 4.95988 5.06089 5.08923 5.10769 5.23336 5.28239 5.36147 5.55404 5.77749 5.86900 5.92466 5.97132 6.15686 6.18294 6.26223 6.27587 6.86335 7.37827 8.92000 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.055176 B = 0.002621 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.340724 B =10679.757026 C =10984.605710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.096 4.096 11 C -0.102 4.102 12 C 0.069 3.931 13 N -0.552 5.552 14 C 0.056 3.944 15 C 0.064 3.936 16 N -0.532 5.532 17 C 0.046 3.954 18 C 0.020 3.980 19 N -0.647 5.647 20 C 0.023 3.977 21 C 0.062 3.938 22 C 0.058 3.942 23 H 0.263 0.737 24 H -0.011 1.011 25 H -0.011 1.011 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.034 0.966 32 H 0.037 0.963 33 H 0.074 0.926 34 H 0.033 0.967 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.331 0.669 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.034 0.966 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.095 -25.807 2.881 26.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.134 4.134 11 C -0.140 4.140 12 C -0.059 4.059 13 N -0.277 5.277 14 C -0.073 4.073 15 C -0.064 4.064 16 N -0.258 5.258 17 C -0.063 4.063 18 C -0.110 4.110 19 N -0.273 5.273 20 C -0.107 4.107 21 C -0.066 4.066 22 C -0.070 4.070 23 H 0.072 0.928 24 H 0.007 0.993 25 H 0.007 0.993 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.144 0.856 40 H 0.109 0.891 41 H 0.099 0.901 42 H 0.052 0.948 43 H 0.114 0.886 44 H 0.106 0.894 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.313 -26.080 2.433 26.402 hybrid contribution 0.663 1.629 0.491 1.826 sum 3.976 -24.451 2.924 24.944 Atomic orbital electron populations 1.70114 1.07864 1.27697 1.51876 1.26035 0.95813 1.03523 0.94789 0.85374 0.79073 0.78633 0.77815 1.18509 1.20317 1.20318 1.21771 0.93569 0.92488 1.50238 0.92168 1.19018 0.94506 0.93324 0.94551 1.21396 0.97953 0.93614 1.00450 1.21476 0.98008 0.93224 1.01271 1.22002 0.94956 0.87980 1.00970 1.62163 1.28178 1.02373 1.34940 1.22175 0.97275 0.97563 0.90248 1.22054 0.93772 0.89284 1.01299 1.62515 1.26875 1.01654 1.34743 1.23599 0.95997 0.88672 0.98005 1.23731 1.01867 0.89330 0.96078 1.66840 1.30270 1.15191 1.15018 1.23740 0.95445 0.93088 0.98475 1.22109 0.97060 0.97419 0.89999 1.22194 0.93883 0.89515 1.01433 0.92783 0.99307 0.99296 0.92960 0.93201 0.93023 0.92825 0.90232 0.94786 0.94456 0.90721 0.94859 0.89258 0.91799 0.90335 0.89522 0.85571 0.89137 0.90120 0.94764 0.88578 0.89397 0.94313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.14 13.29 21.45 0.28 -57.86 16 2 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 3 Si 0.97 44.92 29.54 68.60 2.03 46.95 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.54 -31.66 9.11 25.60 0.23 -31.42 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.02 1.26 4.97 29.85 0.15 1.41 16 10 C -0.10 -4.01 5.15 30.60 0.16 -3.85 16 11 C -0.10 -3.53 5.15 30.59 0.16 -3.37 16 12 C 0.07 1.90 4.96 86.30 0.43 2.32 16 13 N -0.55 -13.82 4.71 -895.74 -4.22 -18.04 16 14 C 0.06 1.32 5.41 86.31 0.47 1.79 16 15 C 0.06 1.29 5.54 86.31 0.48 1.77 16 16 N -0.53 -9.46 4.65 -874.93 -4.07 -13.53 16 17 C 0.05 0.72 3.34 46.48 0.16 0.87 16 18 C 0.02 0.29 8.06 86.41 0.70 0.98 16 19 N -0.65 -8.98 8.53 -524.56 -4.47 -13.45 16 20 C 0.02 0.29 7.81 86.40 0.67 0.97 16 21 C 0.06 1.08 5.51 86.31 0.48 1.56 16 22 C 0.06 1.15 5.61 86.31 0.48 1.64 16 23 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 24 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 25 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 26 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.05 1.82 6.49 -2.39 -0.02 1.80 16 29 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.08 2.08 8.03 -2.39 -0.02 2.06 16 31 H 0.03 0.93 8.12 -2.39 -0.02 0.91 16 32 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 1.94 6.34 -2.39 -0.02 1.93 16 34 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 1.57 7.65 -2.38 -0.02 1.55 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.33 3.58 8.91 -89.70 -0.80 2.78 16 40 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 42 H 0.03 0.67 8.14 -2.38 -0.02 0.65 16 43 H 0.10 1.30 7.47 -2.39 -0.02 1.29 16 44 H 0.09 1.59 8.07 -2.39 -0.02 1.57 16 45 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -65.45 349.24 -5.31 -70.76 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 0.13 Total: 10.31 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: 5.02 Total: -25.13 kcal Atomic # 7 Polarization: -90.40 SS G_CDS: -12.48 Total: -102.89 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -65.45 -5.31 -70.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385188259.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.808 kcal (2) G-P(sol) polarization free energy of solvation -65.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds