Wall clock time and date at job start Mon Mar 30 2020 04:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47122 * 2 1 4 4 C 1.47192 * 109.47190 * 120.00079 * 2 1 3 5 5 N 2.60791 * 109.47386 * 120.00184 * 2 1 3 6 6 N 1.46902 * 109.46726 * 240.00276 * 2 1 3 7 7 C 1.46956 * 110.99742 * 174.99938 * 6 2 1 8 8 C 1.53048 * 109.38432 * 176.82204 * 7 6 2 9 9 N 1.46960 * 109.36368 * 58.38633 * 8 7 6 10 10 C 1.46901 * 111.00115 * 176.81248 * 9 8 7 11 11 C 1.52997 * 109.47154 * 176.24052 * 10 9 8 12 12 O 1.42903 * 109.46991 * 62.60302 * 11 10 9 13 13 C 1.42897 * 113.99749 * 180.02562 * 12 11 10 14 14 C 1.50709 * 109.46894 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00022 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99696 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00341 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99826 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46933 * 59.99949 * 18 16 14 20 20 H 1.48491 * 109.47433 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.46905 * 300.00424 * 18 16 14 22 22 C 1.46960 * 110.88163 * 300.68235 * 9 8 7 23 23 C 1.46956 * 111.02048 * 51.18806 * 6 2 1 24 24 H 1.09005 * 109.46780 * 299.99589 * 1 2 3 25 25 H 1.08994 * 109.47649 * 59.99701 * 1 2 3 26 26 H 1.08998 * 109.47122 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.49113 * 56.83954 * 7 6 2 28 28 H 1.09004 * 109.48870 * 296.79709 * 7 6 2 29 29 H 1.08997 * 109.49265 * 178.35652 * 8 7 6 30 30 H 1.09001 * 109.48711 * 298.42315 * 8 7 6 31 31 H 1.09001 * 109.47273 * 296.24683 * 10 9 8 32 32 H 1.09004 * 109.46716 * 56.24152 * 10 9 8 33 33 H 1.09001 * 109.47231 * 182.59943 * 11 10 9 34 34 H 1.09001 * 109.47545 * 302.59848 * 11 10 9 35 35 H 1.09005 * 109.47140 * 299.99056 * 13 12 11 36 36 H 1.08994 * 109.48056 * 59.99422 * 13 12 11 37 37 H 0.97006 * 119.99649 * 180.02562 * 17 16 14 38 38 H 1.09003 * 109.48670 * 179.28454 * 22 9 8 39 39 H 1.08998 * 109.49070 * 299.32982 * 22 9 8 40 40 H 1.09001 * 109.47147 * 63.19836 * 23 6 2 41 41 H 1.09007 * 109.50613 * 303.15546 * 23 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6939 1.2018 5 7 2.3994 -1.2294 2.1293 6 7 2.0196 -0.6925 -1.1995 7 6 3.4837 -0.6094 -1.2948 8 6 3.9597 -1.4077 -2.5107 9 7 3.3247 -0.8732 -3.7235 10 6 3.8147 -1.5653 -4.9231 11 6 3.0648 -1.0482 -6.1523 12 8 3.3349 0.3445 -6.3241 13 6 2.6784 0.9292 -7.4506 14 6 3.0318 2.3919 -7.5346 15 1 3.6913 2.8310 -6.8008 16 6 2.5130 3.1693 -8.5481 17 7 1.7094 2.6346 -9.4415 18 14 2.9504 4.9824 -8.6518 19 1 4.4203 5.1291 -8.8036 20 1 2.2684 5.5901 -9.8225 21 1 2.5099 5.6696 -7.4111 22 6 1.8605 -0.9568 -3.6284 23 6 1.3846 -0.1585 -2.4125 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.9310 -1.0225 -0.3908 28 1 3.7824 0.4332 -1.4046 29 1 5.0427 -1.3232 -2.6000 30 1 3.6852 -2.4554 -2.3881 31 1 4.8815 -1.3756 -5.0417 32 1 3.6457 -2.6371 -4.8186 33 1 3.3955 -1.5941 -7.0359 34 1 1.9938 -1.1962 -6.0135 35 1 3.0008 0.4244 -8.3614 36 1 1.5996 0.8223 -7.3384 37 1 1.3448 3.1816 -10.1548 38 1 1.4132 -0.5436 -4.5325 39 1 1.5621 -1.9994 -3.5189 40 1 1.6592 0.8892 -2.5352 41 1 0.3015 -0.2426 -2.3235 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385296067.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:42 Heat of formation + Delta-G solvation = 0.154903 kcal Electronic energy + Delta-G solvation = -20478.285682 eV Core-core repulsion = 17393.881470 eV Total energy + Delta-G solvation = -3084.404211 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.79615 -37.61254 -36.45612 -35.30150 -32.76302 -31.89551 -30.89119 -29.10158 -26.97359 -25.60717 -24.54128 -22.67161 -22.29390 -21.26763 -19.73909 -17.98777 -16.89627 -16.37650 -15.60268 -15.51155 -15.25098 -14.83891 -14.68860 -14.41800 -14.19110 -13.82670 -13.64454 -13.24161 -13.02968 -12.91166 -12.51806 -12.28697 -12.13741 -11.87253 -11.75196 -11.58819 -11.30454 -11.21215 -11.04689 -10.83462 -10.79907 -10.59227 -10.31248 -9.94705 -9.09035 -8.78655 -8.69628 -8.15120 -8.07111 -6.09529 -4.10688 2.38364 2.54055 3.32881 3.35645 3.39601 3.54029 3.79262 3.97962 4.36114 4.63161 4.69784 4.81092 4.84624 5.08081 5.19936 5.26044 5.26969 5.29003 5.34599 5.41757 5.49759 5.58024 5.63978 5.71366 5.76446 5.87533 5.88592 6.00301 6.08858 6.18315 6.28503 6.61951 6.70861 7.10666 7.22934 7.24210 7.31634 7.44248 7.81953 8.18076 8.62386 9.03725 9.54226 11.02022 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.022905 B = 0.003887 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.121147 B = 7202.640191 C = 7806.406432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.175 3.825 3 H 0.088 0.912 4 C 0.222 3.778 5 N -0.432 5.432 6 N -0.534 5.534 7 C 0.054 3.946 8 C 0.059 3.941 9 N -0.525 5.525 10 C 0.063 3.937 11 C 0.061 3.939 12 O -0.379 6.379 13 C 0.194 3.806 14 C -0.511 4.511 15 H 0.066 0.934 16 C 0.056 3.944 17 N -0.900 5.900 18 Si 0.907 3.093 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.055 3.945 23 C 0.056 3.944 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.038 0.962 35 H 0.002 0.998 36 H 0.003 0.997 37 H 0.264 0.736 38 H 0.095 0.905 39 H 0.037 0.963 40 H 0.056 0.944 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.809 -7.295 14.990 16.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.064 3.936 3 H 0.106 0.894 4 C -0.097 4.097 5 N -0.108 5.108 6 N -0.261 5.261 7 C -0.074 4.074 8 C -0.069 4.069 9 N -0.250 5.250 10 C -0.065 4.065 11 C -0.017 4.017 12 O -0.298 6.298 13 C 0.120 3.880 14 C -0.550 4.550 15 H 0.084 0.916 16 C -0.145 4.145 17 N -0.540 5.540 18 Si 0.734 3.266 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.074 4.074 23 C -0.071 4.071 24 H 0.088 0.912 25 H 0.102 0.898 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.073 0.927 38 H 0.113 0.887 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.222 -7.937 16.332 18.199 hybrid contribution -0.105 0.893 -0.777 1.188 sum -1.328 -7.044 15.555 17.127 Atomic orbital electron populations 1.21950 0.91066 1.04030 1.03650 1.19070 0.96679 0.94731 0.83162 0.89432 1.28985 0.93088 0.93427 0.94207 1.81198 1.08746 1.08839 1.12047 1.62209 1.06758 1.55678 1.01474 1.22236 0.86695 1.00337 0.98138 1.22101 0.99213 0.96386 0.89215 1.62075 1.05506 1.55923 1.01486 1.22128 1.00759 0.94392 0.89200 1.22342 0.97597 0.86507 0.95279 1.87968 1.72021 1.19008 1.50846 1.20172 0.91581 0.93384 0.82866 1.21020 1.29090 0.93054 1.11792 0.91576 1.24940 0.95051 0.99244 0.95275 1.69955 1.32306 1.36513 1.15199 0.86413 0.78686 0.83977 0.77489 1.20049 1.21236 1.20023 1.22248 0.88420 0.98496 0.98190 1.22332 0.99100 0.98246 0.87445 0.91164 0.89839 0.90833 0.90890 0.92831 0.90165 0.94409 0.90032 0.94378 0.94213 0.94364 0.98030 0.97962 0.92667 0.88727 0.94521 0.92540 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.62 37.16 0.32 -0.61 16 2 C 0.17 1.43 2.54 -70.50 -0.18 1.25 16 3 H 0.09 0.62 8.13 -51.93 -0.42 0.19 16 4 C 0.22 2.33 13.64 -20.76 -0.28 2.04 16 5 N -0.43 -5.61 18.54 42.15 0.78 -4.82 16 6 N -0.53 -5.38 4.55 -229.87 -1.05 -6.42 16 7 C 0.05 0.58 5.42 -3.77 -0.02 0.56 16 8 C 0.06 0.69 5.62 -3.77 -0.02 0.67 16 9 N -0.52 -7.45 4.73 -234.46 -1.11 -8.56 16 10 C 0.06 0.91 5.53 -3.82 -0.02 0.88 16 11 C 0.06 1.08 5.58 37.16 0.21 1.28 16 12 O -0.38 -8.88 10.24 -35.23 -0.36 -9.24 16 13 C 0.19 5.22 5.69 36.01 0.20 5.43 16 14 C -0.51 -14.86 9.43 -34.44 -0.32 -15.19 16 15 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 18 Si 0.91 21.61 29.54 -169.99 -5.02 16.59 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 C 0.05 0.71 5.13 -3.77 -0.02 0.69 16 23 C 0.06 0.60 5.09 -3.77 -0.02 0.58 16 24 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.08 0.47 6.25 -51.93 -0.32 0.14 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.75 7.16 -51.93 -0.37 0.38 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.04 0.65 6.09 -51.93 -0.32 0.33 16 35 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 36 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.09 1.40 5.95 -51.93 -0.31 1.10 16 39 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.77 6.00 -51.93 -0.31 0.45 16 LS Contribution 333.35 15.07 5.02 5.02 Total: -1.00 -32.29 333.35 -7.92 -40.21 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: -6.67 Total: -5.95 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -0.25 Total: -0.92 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: -0.64 Total: -45.71 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -0.36 Total: -9.24 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.29 -7.92 -40.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385296067.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.367 kcal (2) G-P(sol) polarization free energy of solvation -32.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds