Wall clock time and date at job start Mon Mar 30 2020 04:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47122 * 2 1 4 4 C 1.47192 * 109.47190 * 120.00079 * 2 1 3 5 5 N 2.60791 * 109.47386 * 120.00184 * 2 1 3 6 6 N 1.46902 * 109.46726 * 240.00276 * 2 1 3 7 7 C 1.46956 * 110.99742 * 174.99938 * 6 2 1 8 8 C 1.53048 * 109.38432 * 176.82204 * 7 6 2 9 9 N 1.46960 * 109.36368 * 58.38633 * 8 7 6 10 10 C 1.46901 * 111.00115 * 176.81248 * 9 8 7 11 11 C 1.52997 * 109.47154 * 176.24052 * 10 9 8 12 12 O 1.42903 * 109.46991 * 62.60302 * 11 10 9 13 13 C 1.42897 * 113.99749 * 180.02562 * 12 11 10 14 14 C 1.50709 * 109.46894 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00022 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99696 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00341 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99826 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46933 * 59.99949 * 18 16 14 20 20 H 1.48491 * 109.47433 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.46905 * 300.00424 * 18 16 14 22 22 C 1.46960 * 110.88163 * 300.68235 * 9 8 7 23 23 C 1.46956 * 111.02048 * 51.18806 * 6 2 1 24 24 H 1.09005 * 109.46780 * 299.99589 * 1 2 3 25 25 H 1.08994 * 109.47649 * 59.99701 * 1 2 3 26 26 H 1.08998 * 109.47122 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.49113 * 56.83954 * 7 6 2 28 28 H 1.09004 * 109.48870 * 296.79709 * 7 6 2 29 29 H 1.08997 * 109.49265 * 178.35652 * 8 7 6 30 30 H 1.09001 * 109.48711 * 298.42315 * 8 7 6 31 31 H 1.09001 * 109.47273 * 296.24683 * 10 9 8 32 32 H 1.09004 * 109.46716 * 56.24152 * 10 9 8 33 33 H 1.09001 * 109.47231 * 182.59943 * 11 10 9 34 34 H 1.09001 * 109.47545 * 302.59848 * 11 10 9 35 35 H 1.09005 * 109.47140 * 299.99056 * 13 12 11 36 36 H 1.08994 * 109.48056 * 59.99422 * 13 12 11 37 37 H 0.97006 * 119.99649 * 180.02562 * 17 16 14 38 38 H 1.09003 * 109.48670 * 179.28454 * 22 9 8 39 39 H 1.08998 * 109.49070 * 299.32982 * 22 9 8 40 40 H 1.09001 * 109.47147 * 63.19836 * 23 6 2 41 41 H 1.09007 * 109.50613 * 303.15546 * 23 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6939 1.2018 5 7 2.3994 -1.2294 2.1293 6 7 2.0196 -0.6925 -1.1995 7 6 3.4837 -0.6094 -1.2948 8 6 3.9597 -1.4077 -2.5107 9 7 3.3247 -0.8732 -3.7235 10 6 3.8147 -1.5653 -4.9231 11 6 3.0648 -1.0482 -6.1523 12 8 3.3349 0.3445 -6.3241 13 6 2.6784 0.9292 -7.4506 14 6 3.0318 2.3919 -7.5346 15 1 3.6913 2.8310 -6.8008 16 6 2.5130 3.1693 -8.5481 17 7 1.7094 2.6346 -9.4415 18 14 2.9504 4.9824 -8.6518 19 1 4.4203 5.1291 -8.8036 20 1 2.2684 5.5901 -9.8225 21 1 2.5099 5.6696 -7.4111 22 6 1.8605 -0.9568 -3.6284 23 6 1.3846 -0.1585 -2.4125 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.9310 -1.0225 -0.3908 28 1 3.7824 0.4332 -1.4046 29 1 5.0427 -1.3232 -2.6000 30 1 3.6852 -2.4554 -2.3881 31 1 4.8815 -1.3756 -5.0417 32 1 3.6457 -2.6371 -4.8186 33 1 3.3955 -1.5941 -7.0359 34 1 1.9938 -1.1962 -6.0135 35 1 3.0008 0.4244 -8.3614 36 1 1.5996 0.8223 -7.3384 37 1 1.3448 3.1816 -10.1548 38 1 1.4132 -0.5436 -4.5325 39 1 1.5621 -1.9994 -3.5189 40 1 1.6592 0.8892 -2.5352 41 1 0.3015 -0.2426 -2.3235 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385296067.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:42 Heat of formation + Delta-G solvation = -23.524688 kcal Electronic energy + Delta-G solvation = -20479.312506 eV Core-core repulsion = 17393.881470 eV Total energy + Delta-G solvation = -3085.431036 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.70286 -38.86663 -37.78368 -36.38286 -34.84949 -32.85845 -31.80342 -30.40871 -28.82797 -26.60392 -25.50691 -24.42629 -23.47961 -22.47740 -20.71147 -18.79060 -18.56777 -17.77995 -17.31481 -16.75739 -16.36780 -16.07209 -15.84081 -15.69901 -15.28133 -15.10484 -14.84767 -14.55994 -14.02290 -13.79523 -13.75082 -13.51710 -13.24143 -12.99645 -12.87102 -12.75059 -12.61103 -12.49506 -12.32710 -12.25650 -12.17411 -12.02737 -11.55152 -11.45107 -11.20102 -10.79970 -10.12586 -9.51268 -9.12653 -8.27631 -6.39166 1.43135 1.47421 1.55236 1.55825 1.72808 2.38342 2.75206 2.93903 3.03384 3.06286 3.28998 3.85033 3.97845 4.05860 4.19143 4.21036 4.27698 4.43048 4.45042 4.46447 4.53689 4.62195 4.70562 4.80286 4.82302 4.87859 4.92915 4.96766 5.03190 5.05646 5.15416 5.24578 5.33698 5.59942 5.82512 5.85625 6.02265 6.16856 6.23822 6.50589 6.61503 6.90807 7.33076 8.84344 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.022905 B = 0.003887 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.121147 B = 7202.640191 C = 7806.406432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.176 3.824 3 H 0.106 0.894 4 C 0.244 3.756 5 N -0.478 5.478 6 N -0.537 5.537 7 C 0.057 3.943 8 C 0.062 3.938 9 N -0.547 5.547 10 C 0.071 3.929 11 C 0.053 3.947 12 O -0.392 6.392 13 C 0.210 3.790 14 C -0.544 4.544 15 H 0.060 0.940 16 C 0.007 3.993 17 N -0.931 5.931 18 Si 0.980 3.020 19 H -0.268 1.268 20 H -0.277 1.277 21 H -0.264 1.264 22 C 0.055 3.945 23 C 0.063 3.937 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.048 0.952 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.044 0.956 34 H 0.045 0.955 35 H -0.019 1.019 36 H -0.015 1.015 37 H 0.270 0.730 38 H 0.070 0.930 39 H 0.045 0.955 40 H 0.043 0.957 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.014 -6.572 15.819 17.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.065 3.935 3 H 0.123 0.877 4 C -0.074 4.074 5 N -0.155 5.155 6 N -0.264 5.264 7 C -0.071 4.071 8 C -0.066 4.066 9 N -0.273 5.273 10 C -0.057 4.057 11 C -0.025 4.025 12 O -0.312 6.312 13 C 0.135 3.865 14 C -0.581 4.581 15 H 0.078 0.922 16 C -0.191 4.191 17 N -0.571 5.571 18 Si 0.803 3.197 19 H -0.192 1.192 20 H -0.201 1.201 21 H -0.189 1.189 22 C -0.073 4.073 23 C -0.064 4.064 24 H 0.103 0.897 25 H 0.112 0.888 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.066 0.934 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.064 0.936 35 H -0.002 1.002 36 H 0.003 0.997 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.427 -7.237 17.179 18.695 hybrid contribution -0.056 0.579 -1.033 1.186 sum -1.482 -6.658 16.146 17.527 Atomic orbital electron populations 1.21969 0.89276 1.04217 1.04891 1.19296 0.97951 0.94922 0.81369 0.87661 1.29345 0.91790 0.92329 0.93958 1.81222 1.10353 1.10355 1.13574 1.62174 1.06307 1.56106 1.01807 1.22185 0.87274 0.99827 0.97813 1.22118 0.99387 0.96619 0.88461 1.62059 1.06360 1.56721 1.02176 1.22032 0.99952 0.95690 0.87980 1.22661 0.98851 0.83637 0.97304 1.87920 1.71744 1.22259 1.49264 1.19768 0.90580 0.92939 0.83190 1.21346 1.29911 0.94400 1.12486 0.92157 1.25916 0.94417 1.04378 0.94402 1.70064 1.32823 1.38566 1.15640 0.85280 0.78746 0.77570 0.78101 1.19244 1.20145 1.18883 1.22204 0.87747 0.99167 0.98205 1.22270 1.00389 0.96942 0.86819 0.89716 0.88836 0.91174 0.90420 0.93417 0.89666 0.93974 0.90303 0.91610 0.93754 0.93646 1.00159 0.99685 0.92136 0.91197 0.93650 0.93835 0.86966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 8.62 71.98 0.62 -0.83 16 2 C 0.18 2.49 2.54 43.11 0.11 2.60 16 3 H 0.11 1.21 8.13 -2.39 -0.02 1.19 16 4 C 0.24 4.73 13.64 89.44 1.22 5.95 16 5 N -0.48 -11.99 18.54 20.00 0.37 -11.62 16 6 N -0.54 -9.78 4.55 -881.18 -4.01 -13.79 16 7 C 0.06 1.14 5.42 86.31 0.47 1.61 16 8 C 0.06 1.36 5.62 86.31 0.48 1.84 16 9 N -0.55 -15.04 4.73 -895.71 -4.23 -19.27 16 10 C 0.07 1.98 5.53 86.30 0.48 2.46 16 11 C 0.05 1.87 5.58 71.98 0.40 2.28 16 12 O -0.39 -18.75 10.24 -148.98 -1.53 -20.27 16 13 C 0.21 11.65 5.69 71.24 0.41 12.06 16 14 C -0.54 -32.08 9.43 25.60 0.24 -31.84 16 15 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 16 C 0.01 0.41 5.46 84.65 0.46 0.87 16 17 N -0.93 -55.45 13.29 21.45 0.28 -55.16 16 18 Si 0.98 43.84 29.54 68.60 2.03 45.87 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 22 C 0.05 1.37 5.13 86.31 0.44 1.81 16 23 C 0.06 1.25 5.09 86.31 0.44 1.69 16 24 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 25 H 0.09 0.78 6.25 -2.39 -0.01 0.76 16 26 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.08 1.48 7.16 -2.39 -0.02 1.47 16 28 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.05 1.56 6.09 -2.39 -0.01 1.54 16 35 H -0.02 -1.12 8.14 -2.38 -0.02 -1.14 16 36 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 37 H 0.27 14.93 8.31 -92.70 -0.77 14.16 16 38 H 0.07 2.09 5.95 -2.39 -0.01 2.07 16 39 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.11 1.68 6.00 -2.38 -0.01 1.66 16 Total: -1.00 -69.53 333.35 -0.32 -69.84 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: 1.00 Total: 3.91 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 5.77 Total: 0.50 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -7.59 Total: -99.85 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -1.53 Total: -20.27 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -69.53 -0.32 -69.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385296067.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.319 kcal (2) G-P(sol) polarization free energy of solvation -69.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds