Wall clock time and date at job start Mon Mar 30 2020 04:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.46882 * 2 1 4 4 C 1.46908 * 111.00001 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46779 * 34.99474 * 4 3 2 6 6 C 1.52996 * 109.47078 * 274.99943 * 4 3 2 7 7 C 1.50703 * 109.47217 * 154.99979 * 4 3 2 8 8 C 1.39863 * 126.03939 * 40.15096 * 7 4 3 9 9 N 1.30837 * 108.19940 * 180.23470 * 8 7 4 10 10 N 1.40080 * 108.20847 * 359.78161 * 9 8 7 11 11 C 1.46501 * 126.03988 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.46864 * 304.97509 * 11 10 9 13 13 O 1.42901 * 109.46820 * 179.97438 * 12 11 10 14 14 C 1.42893 * 114.00101 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47580 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99603 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00339 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99966 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99951 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46838 * 89.99863 * 19 17 15 21 21 H 1.48496 * 109.46943 * 209.99951 * 19 17 15 22 22 H 1.48500 * 109.47283 * 330.00175 * 19 17 15 23 23 C 1.34953 * 107.92287 * 359.97438 * 10 9 8 24 24 H 1.08999 * 109.47169 * 60.00063 * 1 2 3 25 25 H 1.08995 * 109.47136 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47207 * 300.00086 * 1 2 3 27 27 H 1.08996 * 109.47022 * 240.00179 * 2 1 3 28 28 H 1.08996 * 109.46887 * 119.99494 * 2 1 3 29 29 H 1.00903 * 111.00412 * 56.04422 * 3 2 1 30 30 H 1.09001 * 109.47104 * 59.99943 * 6 4 3 31 31 H 1.09003 * 109.47197 * 179.97438 * 6 4 3 32 32 H 1.09000 * 109.47142 * 299.99948 * 6 4 3 33 33 H 1.08001 * 125.90034 * 0.02562 * 8 7 4 34 34 H 1.08998 * 109.46740 * 64.97642 * 11 10 9 35 35 H 1.09002 * 109.46981 * 184.97377 * 11 10 9 36 36 H 1.08990 * 109.47278 * 299.99670 * 12 11 10 37 37 H 1.09003 * 109.46981 * 60.00430 * 12 11 10 38 38 H 1.09000 * 109.47465 * 300.00439 * 14 13 12 39 39 H 1.09000 * 109.47347 * 59.99991 * 14 13 12 40 40 H 0.96998 * 119.99884 * 180.02562 * 18 17 15 41 41 H 1.08002 * 126.12372 * 179.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4242 0.0006 5 1 3.8740 0.5923 -0.5885 6 6 4.0007 1.3124 1.4378 7 6 3.9562 2.7248 -0.5999 8 6 3.3816 3.9824 -0.3890 9 7 4.0595 4.8625 -1.0802 10 7 5.0915 4.1925 -1.7497 11 6 6.0860 4.8055 -2.6338 12 6 5.3728 5.5841 -3.7411 13 8 6.3428 6.1825 -4.6031 14 6 5.7787 6.9378 -5.6770 15 6 6.8858 7.5198 -6.5177 16 1 7.9170 7.3320 -6.2575 17 6 6.5822 8.2928 -7.6183 18 7 5.3264 8.5226 -7.9341 19 14 7.9545 9.0148 -8.6599 20 1 8.3115 8.0594 -9.7393 21 1 7.4989 10.2937 -9.2614 22 1 9.1441 9.2649 -7.8069 23 6 5.0086 2.8826 -1.4356 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.6441 1.9013 0.7813 30 1 3.6622 0.3717 1.8721 31 1 5.0903 1.3411 1.4383 32 1 3.6148 2.1443 2.0270 33 1 2.5241 4.1906 0.2338 34 1 6.7139 5.4854 -2.0580 35 1 6.7059 4.0269 -3.0784 36 1 4.7449 4.9042 -4.3168 37 1 4.7529 6.3627 -3.2964 38 1 5.1592 6.2863 -6.2933 39 1 5.1672 7.7441 -5.2722 40 1 5.1128 9.0661 -8.7086 41 1 5.6621 2.0999 -1.7916 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385303655.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:49 Heat of formation + Delta-G solvation = 20.787347 kcal Electronic energy + Delta-G solvation = -19444.828979 eV Core-core repulsion = 16361.319458 eV Total energy + Delta-G solvation = -3083.509522 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.17355 -37.52217 -36.87638 -33.75846 -32.76861 -32.31643 -29.89216 -28.46930 -27.96607 -26.72827 -23.35868 -22.94087 -22.35499 -22.18824 -20.58737 -19.68892 -17.00051 -16.46900 -15.91136 -15.62817 -15.34055 -15.19835 -14.87259 -14.45111 -14.24502 -13.95196 -13.55380 -13.32903 -13.16075 -12.80850 -12.60653 -12.53972 -12.04283 -11.96623 -11.65823 -11.57880 -11.39077 -11.13871 -10.88711 -10.82790 -10.76523 -10.33077 -10.11984 -9.29317 -9.17055 -8.90861 -8.65119 -8.27580 -8.25000 -6.13800 -4.16506 1.99460 2.58094 2.87394 3.28744 3.33718 3.38948 3.97948 4.29775 4.50156 4.75693 4.84164 4.87997 4.89706 5.06509 5.08804 5.11510 5.19860 5.22529 5.28310 5.42322 5.52552 5.54338 5.57472 5.68714 5.73371 5.81427 5.87716 5.93594 6.10843 6.13129 6.21502 6.74188 6.84598 7.04528 7.12846 7.17244 7.37532 7.74402 7.84346 8.08948 8.46557 8.95183 9.48230 10.97684 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.038387 B = 0.002665 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.232792 B =10504.469711 C =10870.693599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 N -0.681 5.681 4 C 0.166 3.834 5 H 0.079 0.921 6 C -0.176 4.176 7 C -0.229 4.229 8 C 0.061 3.939 9 N -0.292 5.292 10 N -0.362 5.362 11 C 0.137 3.863 12 C 0.056 3.944 13 O -0.396 6.396 14 C 0.198 3.802 15 C -0.518 4.518 16 H 0.067 0.933 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.910 3.090 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.271 1.271 23 C 0.059 3.941 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.027 0.973 29 H 0.340 0.660 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.176 0.824 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.041 0.959 37 H 0.053 0.947 38 H 0.007 0.993 39 H 0.008 0.992 40 H 0.265 0.735 41 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.505 -17.501 18.434 26.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.075 4.075 3 N -0.312 5.312 4 C 0.055 3.945 5 H 0.097 0.903 6 C -0.235 4.235 7 C -0.241 4.241 8 C -0.126 4.126 9 N -0.113 5.113 10 N -0.144 5.144 11 C 0.016 3.984 12 C -0.023 4.023 13 O -0.316 6.316 14 C 0.124 3.876 15 C -0.556 4.556 16 H 0.086 0.914 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.737 3.263 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.196 1.196 23 C -0.088 4.088 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.045 0.955 29 H 0.158 0.842 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.193 0.807 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.025 0.975 39 H 0.026 0.974 40 H 0.075 0.925 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -5.240 -16.035 17.189 24.084 hybrid contribution 0.372 -0.683 0.414 0.881 sum -4.868 -16.718 17.604 24.760 Atomic orbital electron populations 1.21771 0.95050 1.01579 1.02498 1.21932 0.95628 0.89614 1.00288 1.60518 1.07362 1.13232 1.50099 1.19614 0.86910 0.93831 0.94150 0.90286 1.22480 1.02310 1.01242 0.97438 1.19765 1.00633 0.95637 1.08112 1.23548 0.99373 0.90570 0.99099 1.77422 1.00653 1.21438 1.11819 1.48531 1.24362 1.05258 1.36291 1.21548 0.87872 0.98774 0.90231 1.22320 0.92090 0.96541 0.91327 1.87767 1.32430 1.69284 1.42072 1.20246 0.95006 0.89429 0.82930 1.21031 0.93423 1.31090 1.10030 0.91448 1.24967 0.96131 0.96109 0.97319 1.69965 1.17156 1.38998 1.27473 0.86303 0.81544 0.78379 0.80066 1.20420 1.21018 1.19590 1.22240 1.00052 0.87262 0.99233 0.91686 0.92362 0.92917 0.91084 0.95504 0.84206 0.93003 0.91940 0.92320 0.80731 0.89021 0.88018 0.94063 0.92905 0.97544 0.97398 0.92543 0.81299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.17 37.16 0.38 -0.59 16 2 C 0.05 0.39 6.20 -3.83 -0.02 0.36 16 3 N -0.68 -5.70 5.99 -107.95 -0.65 -6.35 16 4 C 0.17 1.43 3.02 -68.86 -0.21 1.22 16 5 H 0.08 0.66 7.79 -51.93 -0.40 0.25 16 6 C -0.18 -1.26 9.14 37.16 0.34 -0.92 16 7 C -0.23 -2.60 5.09 -105.06 -0.53 -3.13 16 8 C 0.06 0.78 11.66 -17.37 -0.20 0.58 16 9 N -0.29 -4.67 12.42 30.62 0.38 -4.29 16 10 N -0.36 -5.32 3.68 -61.36 -0.23 -5.54 16 11 C 0.14 2.07 6.88 -4.04 -0.03 2.04 16 12 C 0.06 1.09 6.12 37.16 0.23 1.31 16 13 O -0.40 -9.57 10.33 -35.23 -0.36 -9.93 16 14 C 0.20 5.52 5.69 36.01 0.20 5.73 16 15 C -0.52 -15.31 9.43 -34.44 -0.32 -15.63 16 16 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 19 Si 0.91 21.85 29.54 -169.99 -5.02 16.83 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 C 0.06 0.71 11.36 -17.22 -0.20 0.51 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.53 8.06 -51.93 -0.42 0.11 16 28 H 0.03 0.17 7.43 -51.93 -0.39 -0.22 16 29 H 0.34 2.49 8.47 -39.29 -0.33 2.16 16 30 H 0.05 0.33 7.45 -51.93 -0.39 -0.06 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.43 8.13 -51.93 -0.42 0.00 16 33 H 0.18 1.80 8.06 -52.49 -0.42 1.37 16 34 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.10 1.30 8.07 -51.93 -0.42 0.88 16 36 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 347.72 15.07 5.24 5.24 Total: -1.00 -32.82 347.72 -7.33 -40.15 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -6.97 Total: -2.74 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -0.46 Total: -6.99 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.24 Total: -42.55 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -0.36 Total: -9.93 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.82 -7.33 -40.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385303655.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.934 kcal (2) G-P(sol) polarization free energy of solvation -32.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds