Wall clock time and date at job start Mon Mar 30 2020 04:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.46882 * 2 1 4 4 C 1.46908 * 111.00001 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46779 * 34.99474 * 4 3 2 6 6 C 1.52996 * 109.47078 * 274.99943 * 4 3 2 7 7 C 1.50703 * 109.47217 * 154.99979 * 4 3 2 8 8 C 1.39863 * 126.03939 * 40.15096 * 7 4 3 9 9 N 1.30837 * 108.19940 * 180.23470 * 8 7 4 10 10 N 1.40080 * 108.20847 * 359.78161 * 9 8 7 11 11 C 1.46501 * 126.03988 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.46864 * 304.97509 * 11 10 9 13 13 O 1.42901 * 109.46820 * 179.97438 * 12 11 10 14 14 C 1.42893 * 114.00101 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47580 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99603 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00339 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99966 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99951 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46838 * 89.99863 * 19 17 15 21 21 H 1.48496 * 109.46943 * 209.99951 * 19 17 15 22 22 H 1.48500 * 109.47283 * 330.00175 * 19 17 15 23 23 C 1.34953 * 107.92287 * 359.97438 * 10 9 8 24 24 H 1.08999 * 109.47169 * 60.00063 * 1 2 3 25 25 H 1.08995 * 109.47136 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47207 * 300.00086 * 1 2 3 27 27 H 1.08996 * 109.47022 * 240.00179 * 2 1 3 28 28 H 1.08996 * 109.46887 * 119.99494 * 2 1 3 29 29 H 1.00903 * 111.00412 * 56.04422 * 3 2 1 30 30 H 1.09001 * 109.47104 * 59.99943 * 6 4 3 31 31 H 1.09003 * 109.47197 * 179.97438 * 6 4 3 32 32 H 1.09000 * 109.47142 * 299.99948 * 6 4 3 33 33 H 1.08001 * 125.90034 * 0.02562 * 8 7 4 34 34 H 1.08998 * 109.46740 * 64.97642 * 11 10 9 35 35 H 1.09002 * 109.46981 * 184.97377 * 11 10 9 36 36 H 1.08990 * 109.47278 * 299.99670 * 12 11 10 37 37 H 1.09003 * 109.46981 * 60.00430 * 12 11 10 38 38 H 1.09000 * 109.47465 * 300.00439 * 14 13 12 39 39 H 1.09000 * 109.47347 * 59.99991 * 14 13 12 40 40 H 0.96998 * 119.99884 * 180.02562 * 18 17 15 41 41 H 1.08002 * 126.12372 * 179.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4242 0.0006 5 1 3.8740 0.5923 -0.5885 6 6 4.0007 1.3124 1.4378 7 6 3.9562 2.7248 -0.5999 8 6 3.3816 3.9824 -0.3890 9 7 4.0595 4.8625 -1.0802 10 7 5.0915 4.1925 -1.7497 11 6 6.0860 4.8055 -2.6338 12 6 5.3728 5.5841 -3.7411 13 8 6.3428 6.1825 -4.6031 14 6 5.7787 6.9378 -5.6770 15 6 6.8858 7.5198 -6.5177 16 1 7.9170 7.3320 -6.2575 17 6 6.5822 8.2928 -7.6183 18 7 5.3264 8.5226 -7.9341 19 14 7.9545 9.0148 -8.6599 20 1 8.3115 8.0594 -9.7393 21 1 7.4989 10.2937 -9.2614 22 1 9.1441 9.2649 -7.8069 23 6 5.0086 2.8826 -1.4356 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.6441 1.9013 0.7813 30 1 3.6622 0.3717 1.8721 31 1 5.0903 1.3411 1.4383 32 1 3.6148 2.1443 2.0270 33 1 2.5241 4.1906 0.2338 34 1 6.7139 5.4854 -2.0580 35 1 6.7059 4.0269 -3.0784 36 1 4.7449 4.9042 -4.3168 37 1 4.7529 6.3627 -3.2964 38 1 5.1592 6.2863 -6.2933 39 1 5.1672 7.7441 -5.2722 40 1 5.1128 9.0661 -8.7086 41 1 5.6621 2.0999 -1.7916 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385303655.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:49 Heat of formation + Delta-G solvation = -1.765144 kcal Electronic energy + Delta-G solvation = -19445.806929 eV Core-core repulsion = 16361.319458 eV Total energy + Delta-G solvation = -3084.487471 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.17059 -38.87230 -38.07072 -35.24580 -34.50903 -33.20507 -31.01884 -29.86768 -28.73621 -28.38302 -24.81007 -24.28226 -23.78318 -22.91807 -21.59963 -20.64540 -18.70380 -18.13776 -17.22654 -17.01139 -16.58864 -16.33389 -15.95123 -15.73825 -15.49193 -15.21129 -14.77271 -14.36806 -14.08114 -14.00930 -13.79374 -13.50735 -13.12755 -12.96538 -12.94475 -12.65725 -12.56213 -12.51392 -12.25323 -12.19216 -12.05259 -11.91787 -11.37993 -11.30708 -10.95028 -10.39554 -10.38447 -9.37077 -9.13268 -8.35932 -6.49954 0.99300 1.39213 1.42997 1.49333 1.55931 1.94004 2.32943 2.98085 3.02124 3.34946 3.70356 3.96373 3.99881 4.10885 4.21482 4.26064 4.30257 4.37460 4.46347 4.51374 4.55512 4.61443 4.70455 4.79594 4.80949 4.93370 4.95287 5.07002 5.10296 5.19257 5.26693 5.34456 5.41029 5.49683 5.78612 5.87389 6.09362 6.26813 6.38995 6.59982 6.70505 6.83173 7.21788 8.76749 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.038387 B = 0.002665 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.232792 B =10504.469711 C =10870.693599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.056 3.944 3 N -0.695 5.695 4 C 0.170 3.830 5 H 0.085 0.915 6 C -0.168 4.168 7 C -0.227 4.227 8 C 0.061 3.939 9 N -0.345 5.345 10 N -0.378 5.378 11 C 0.150 3.850 12 C 0.056 3.944 13 O -0.400 6.400 14 C 0.211 3.789 15 C -0.550 4.550 16 H 0.068 0.932 17 C 0.004 3.996 18 N -0.932 5.932 19 Si 0.989 3.011 20 H -0.265 1.265 21 H -0.275 1.275 22 H -0.262 1.262 23 C 0.057 3.943 24 H 0.049 0.951 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.039 0.961 29 H 0.345 0.655 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.194 0.806 34 H 0.093 0.907 35 H 0.130 0.870 36 H 0.037 0.963 37 H 0.035 0.965 38 H -0.013 1.013 39 H -0.016 1.016 40 H 0.272 0.728 41 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.451 -18.893 18.893 27.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.073 4.073 3 N -0.327 5.327 4 C 0.059 3.941 5 H 0.103 0.897 6 C -0.227 4.227 7 C -0.239 4.239 8 C -0.125 4.125 9 N -0.167 5.167 10 N -0.161 5.161 11 C 0.029 3.971 12 C -0.022 4.022 13 O -0.320 6.320 14 C 0.136 3.864 15 C -0.587 4.587 16 H 0.087 0.913 17 C -0.195 4.195 18 N -0.571 5.571 19 Si 0.811 3.189 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.186 1.186 23 C -0.088 4.088 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.164 0.836 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.211 0.789 34 H 0.111 0.889 35 H 0.148 0.852 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.005 0.995 39 H 0.001 0.999 40 H 0.081 0.919 41 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -4.203 -17.457 17.682 25.200 hybrid contribution -0.085 -0.324 0.360 0.492 sum -4.289 -17.781 18.042 25.692 Atomic orbital electron populations 1.21747 0.94718 1.02166 1.01987 1.21937 0.95863 0.88898 1.00591 1.60474 1.07279 1.14228 1.50681 1.19608 0.87175 0.92370 0.94904 0.89664 1.22394 1.02150 1.01823 0.96347 1.20142 1.00031 0.96211 1.07546 1.23984 0.99287 0.90970 0.98245 1.77374 1.02222 1.23334 1.13739 1.48473 1.24568 1.06191 1.36852 1.21377 0.87623 0.99285 0.88841 1.22470 0.91875 0.96147 0.91712 1.87716 1.33550 1.69021 1.41672 1.19882 0.94353 0.88653 0.83553 1.21378 0.93698 1.32422 1.11252 0.91333 1.26060 0.99117 0.95925 0.98386 1.70085 1.19560 1.39334 1.28155 0.85094 0.77924 0.77761 0.78088 1.19044 1.20031 1.18576 1.22882 1.00506 0.86721 0.98722 0.93201 0.91257 0.92386 0.91598 0.94270 0.83636 0.91749 0.92039 0.92545 0.78939 0.88861 0.85156 0.94462 0.94659 0.99508 0.99852 0.91925 0.77999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 10.17 71.98 0.73 -0.96 16 2 C 0.06 0.68 6.20 86.30 0.54 1.22 16 3 N -0.70 -10.43 5.99 -495.45 -2.97 -13.40 16 4 C 0.17 2.57 3.02 44.17 0.13 2.70 16 5 H 0.09 1.20 7.79 -2.39 -0.02 1.18 16 6 C -0.17 -2.02 9.14 71.98 0.66 -1.36 16 7 C -0.23 -4.81 5.09 -20.15 -0.10 -4.91 16 8 C 0.06 1.54 11.66 85.23 0.99 2.53 16 9 N -0.35 -11.14 12.42 -57.03 -0.71 -11.85 16 10 N -0.38 -10.88 3.68 -348.06 -1.28 -12.16 16 11 C 0.15 4.46 6.88 86.38 0.59 5.05 16 12 C 0.06 2.25 6.12 71.98 0.44 2.69 16 13 O -0.40 -19.82 10.33 -148.98 -1.54 -21.35 16 14 C 0.21 12.20 5.69 71.24 0.41 12.60 16 15 C -0.55 -33.02 9.43 25.60 0.24 -32.78 16 16 H 0.07 4.00 7.81 -2.91 -0.02 3.98 16 17 C 0.00 0.21 5.46 84.66 0.46 0.67 16 18 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 19 Si 0.99 44.39 29.54 68.60 2.03 46.42 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 21 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 23 C 0.06 1.27 11.36 83.54 0.95 2.22 16 24 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.07 0.87 8.06 -2.39 -0.02 0.86 16 28 H 0.04 0.39 7.43 -2.39 -0.02 0.37 16 29 H 0.34 4.47 8.47 -89.69 -0.76 3.71 16 30 H 0.06 0.63 7.45 -2.39 -0.02 0.61 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 33 H 0.19 3.83 8.06 -2.91 -0.02 3.81 16 34 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.13 3.09 8.07 -2.39 -0.02 3.07 16 36 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 38 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 39 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 40 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 41 H 0.20 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -71.63 347.72 2.09 -69.54 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 0.23 Total: 9.86 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 6.04 Total: -10.32 kcal Atomic # 7 Polarization: -89.46 SS G_CDS: -4.67 Total: -94.14 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -1.54 Total: -21.35 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -71.63 2.09 -69.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385303655.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.770 kcal (2) G-P(sol) polarization free energy of solvation -71.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds