Wall clock time and date at job start Mon Mar 30 2020 04:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.47276 * 2 1 4 4 C 1.46901 * 110.99880 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47401 * 325.00504 * 4 3 2 6 6 C 1.53000 * 109.46769 * 85.00797 * 4 3 2 7 7 C 1.50699 * 109.47121 * 205.00533 * 4 3 2 8 8 C 1.39867 * 126.03747 * 319.69260 * 7 4 3 9 9 N 1.30843 * 108.20300 * 179.81811 * 8 7 4 10 10 N 1.40087 * 108.20056 * 0.43796 * 9 8 7 11 11 C 1.46497 * 126.03497 * 179.69620 * 10 9 8 12 12 C 1.52999 * 109.47474 * 305.02659 * 11 10 9 13 13 O 1.42897 * 109.47812 * 180.02562 * 12 11 10 14 14 C 1.42893 * 114.00710 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47544 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99412 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00132 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99672 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00050 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47147 * 59.99203 * 19 17 15 21 21 H 1.48490 * 109.47201 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46960 * 299.99415 * 19 17 15 23 23 C 1.34940 * 107.92754 * 359.71964 * 10 9 8 24 24 H 1.09003 * 109.46846 * 299.99603 * 1 2 3 25 25 H 1.09006 * 109.47089 * 59.99482 * 1 2 3 26 26 H 1.09000 * 109.47556 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46662 * 240.00918 * 2 1 3 28 28 H 1.08991 * 109.47375 * 120.00947 * 2 1 3 29 29 H 1.00892 * 111.00423 * 303.96172 * 3 2 1 30 30 H 1.09001 * 109.47194 * 299.99524 * 6 4 3 31 31 H 1.08992 * 109.47399 * 59.99697 * 6 4 3 32 32 H 1.09004 * 109.46724 * 180.02562 * 6 4 3 33 33 H 1.08007 * 125.90300 * 359.97438 * 8 7 4 34 34 H 1.09005 * 109.47522 * 65.02870 * 11 10 9 35 35 H 1.09002 * 109.47197 * 185.02978 * 11 10 9 36 36 H 1.08999 * 109.47226 * 300.00243 * 12 11 10 37 37 H 1.09007 * 109.47287 * 59.99691 * 12 11 10 38 38 H 1.09001 * 109.47127 * 300.00193 * 14 13 12 39 39 H 1.09010 * 109.46803 * 59.99710 * 14 13 12 40 40 H 0.97001 * 119.99747 * 180.02562 * 18 17 15 41 41 H 1.08005 * 126.12900 * 180.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4241 -0.0006 5 1 3.8741 0.5921 0.5885 6 6 4.0007 1.3124 -1.4379 7 6 3.9563 2.7246 0.6000 8 6 3.3836 3.9827 0.3868 9 7 4.0616 4.8628 1.0780 10 7 5.0948 4.1929 1.7458 11 6 6.0931 4.8068 2.6249 12 6 6.8070 5.9344 1.8767 13 8 7.7812 6.5328 2.7339 14 6 8.5085 7.6038 2.1288 15 6 9.5029 8.1570 3.1167 16 1 9.5723 7.7334 4.1077 17 6 10.3234 9.2047 2.7558 18 7 10.2385 9.7208 1.5491 19 14 11.5566 9.8900 3.9801 20 1 12.5007 8.8176 4.3846 21 1 12.3121 11.0029 3.3513 22 1 10.8373 10.3939 5.1776 23 6 5.0085 2.8823 1.4361 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5139 0.8898 29 1 1.6442 1.9013 -0.7812 30 1 3.6621 0.3718 -1.8723 31 1 3.6148 2.1443 -2.0269 32 1 5.0903 1.3410 -1.4383 33 1 2.5279 4.1914 -0.2382 34 1 5.5994 5.2123 3.5080 35 1 6.8212 4.0546 2.9288 36 1 7.3008 5.5289 0.9936 37 1 6.0790 6.6866 1.5726 38 1 9.0371 7.2334 1.2505 39 1 7.8155 8.3907 1.8307 40 1 10.8160 10.4576 1.2950 41 1 5.6618 2.0994 1.7922 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385303656.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:53 Heat of formation + Delta-G solvation = 20.610092 kcal Electronic energy + Delta-G solvation = -19420.843307 eV Core-core repulsion = 16337.326099 eV Total energy + Delta-G solvation = -3083.517208 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.17396 -37.52940 -36.88781 -33.76480 -32.77674 -32.32161 -29.89657 -28.48176 -27.95616 -26.73301 -23.37217 -22.93587 -22.36697 -22.20289 -20.59212 -19.68212 -17.01920 -16.47818 -15.90100 -15.66689 -15.34549 -15.17057 -14.75913 -14.65687 -14.24637 -13.86881 -13.54735 -13.36260 -13.14639 -12.85048 -12.70518 -12.39683 -12.05391 -12.01178 -11.65275 -11.58014 -11.39612 -11.15446 -10.91768 -10.82787 -10.76097 -10.32799 -10.13345 -9.29524 -9.19149 -8.91435 -8.66872 -8.27878 -8.25703 -6.14516 -4.17281 2.00163 2.57195 2.87465 3.30151 3.32959 3.36647 3.96536 4.29388 4.50493 4.73816 4.83837 4.87390 4.88414 5.07037 5.08522 5.12566 5.17599 5.21696 5.28426 5.42327 5.52576 5.54199 5.57019 5.66784 5.72307 5.81176 5.89513 5.91807 6.09833 6.12247 6.20278 6.74020 6.83255 7.03011 7.12577 7.15670 7.36246 7.73411 7.84245 8.08031 8.45643 8.94061 9.47385 10.96864 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.060617 B = 0.002519 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.804533 B =11113.338456 C =11184.271926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 N -0.682 5.682 4 C 0.166 3.834 5 H 0.079 0.921 6 C -0.176 4.176 7 C -0.229 4.229 8 C 0.061 3.939 9 N -0.292 5.292 10 N -0.362 5.362 11 C 0.137 3.863 12 C 0.056 3.944 13 O -0.396 6.396 14 C 0.198 3.802 15 C -0.518 4.518 16 H 0.067 0.933 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.911 3.089 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.059 3.941 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.027 0.973 28 H 0.070 0.930 29 H 0.340 0.660 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.176 0.824 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.040 0.960 37 H 0.053 0.947 38 H 0.006 0.994 39 H 0.008 0.992 40 H 0.265 0.735 41 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.854 -20.010 -4.968 26.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.075 4.075 3 N -0.313 5.313 4 C 0.055 3.945 5 H 0.097 0.903 6 C -0.236 4.236 7 C -0.241 4.241 8 C -0.126 4.126 9 N -0.113 5.113 10 N -0.144 5.144 11 C 0.015 3.985 12 C -0.023 4.023 13 O -0.315 6.315 14 C 0.124 3.876 15 C -0.556 4.556 16 H 0.085 0.915 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.738 3.262 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.088 4.088 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.045 0.955 28 H 0.089 0.911 29 H 0.158 0.842 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.193 0.807 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.024 0.976 39 H 0.026 0.974 40 H 0.075 0.925 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -15.550 -18.537 -3.771 24.488 hybrid contribution 0.793 -0.579 -0.959 1.372 sum -14.758 -19.116 -4.730 24.609 Atomic orbital electron populations 1.21770 0.95079 1.01559 1.02454 1.21933 0.95584 0.89680 1.00310 1.60533 1.07428 1.13179 1.50113 1.19613 0.86839 0.93802 0.94228 0.90309 1.22482 1.02466 1.01261 0.97347 1.19764 1.00924 0.95646 1.07807 1.23551 0.99437 0.90523 0.99076 1.77429 1.00613 1.21305 1.11989 1.48527 1.23577 1.05124 1.37194 1.21551 0.88388 0.97105 0.91410 1.22324 0.92292 0.94586 0.93068 1.87769 1.51412 1.52369 1.39982 1.20242 0.90133 0.83108 0.94085 1.20994 1.18447 1.16459 0.99744 0.91484 1.24969 0.97523 0.96245 0.95797 1.69957 1.39512 1.25479 1.18654 0.86350 0.80663 0.78430 0.80766 1.19985 1.21114 1.19945 1.22240 0.99982 0.87340 0.99226 0.91769 0.92891 0.92374 0.95453 0.91129 0.84181 0.92992 0.92267 0.91832 0.80734 0.88955 0.88010 0.94154 0.92902 0.97570 0.97411 0.92494 0.81298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.17 37.16 0.38 -0.52 16 2 C 0.05 0.36 6.20 -3.82 -0.02 0.34 16 3 N -0.68 -5.50 5.99 -107.95 -0.65 -6.14 16 4 C 0.17 1.43 3.02 -68.86 -0.21 1.22 16 5 H 0.08 0.65 7.79 -51.93 -0.40 0.24 16 6 C -0.18 -1.36 9.14 37.16 0.34 -1.02 16 7 C -0.23 -2.60 5.09 -105.05 -0.53 -3.13 16 8 C 0.06 0.78 11.67 -17.36 -0.20 0.58 16 9 N -0.29 -4.67 12.42 30.63 0.38 -4.29 16 10 N -0.36 -5.32 3.68 -61.37 -0.23 -5.54 16 11 C 0.14 2.06 6.88 -4.04 -0.03 2.03 16 12 C 0.06 1.08 6.12 37.16 0.23 1.30 16 13 O -0.40 -9.52 10.33 -35.23 -0.36 -9.88 16 14 C 0.20 5.50 5.69 36.01 0.20 5.71 16 15 C -0.52 -15.28 9.43 -34.44 -0.32 -15.60 16 16 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 19 Si 0.91 21.81 29.54 -169.99 -5.02 16.79 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 23 C 0.06 0.71 11.36 -17.23 -0.20 0.51 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.03 0.17 7.44 -51.93 -0.39 -0.22 16 28 H 0.07 0.49 8.06 -51.93 -0.42 0.07 16 29 H 0.34 2.44 8.47 -39.30 -0.33 2.11 16 30 H 0.05 0.35 7.45 -51.93 -0.39 -0.04 16 31 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.18 1.80 8.06 -52.48 -0.42 1.37 16 34 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 35 H 0.10 1.30 8.07 -51.93 -0.42 0.88 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.05 1.07 8.14 -51.92 -0.42 0.65 16 38 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 39 H 0.01 0.23 8.14 -51.92 -0.42 -0.19 16 40 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.17 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 347.72 15.07 5.24 5.24 Total: -1.00 -32.60 347.72 -7.33 -39.93 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -6.97 Total: -2.79 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -0.46 Total: -7.04 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.24 Total: -42.23 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -0.36 Total: -9.88 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.60 -7.33 -39.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385303656.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.538 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds