Wall clock time and date at job start Mon Mar 30 2020 04:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.47276 * 2 1 4 4 C 1.46901 * 110.99880 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47401 * 325.00504 * 4 3 2 6 6 C 1.53000 * 109.46769 * 85.00797 * 4 3 2 7 7 C 1.50699 * 109.47121 * 205.00533 * 4 3 2 8 8 C 1.39867 * 126.03747 * 319.69260 * 7 4 3 9 9 N 1.30843 * 108.20300 * 179.81811 * 8 7 4 10 10 N 1.40087 * 108.20056 * 0.43796 * 9 8 7 11 11 C 1.46497 * 126.03497 * 179.69620 * 10 9 8 12 12 C 1.52999 * 109.47474 * 305.02659 * 11 10 9 13 13 O 1.42897 * 109.47812 * 180.02562 * 12 11 10 14 14 C 1.42893 * 114.00710 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47544 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99412 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00132 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99672 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00050 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47147 * 59.99203 * 19 17 15 21 21 H 1.48490 * 109.47201 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46960 * 299.99415 * 19 17 15 23 23 C 1.34940 * 107.92754 * 359.71964 * 10 9 8 24 24 H 1.09003 * 109.46846 * 299.99603 * 1 2 3 25 25 H 1.09006 * 109.47089 * 59.99482 * 1 2 3 26 26 H 1.09000 * 109.47556 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46662 * 240.00918 * 2 1 3 28 28 H 1.08991 * 109.47375 * 120.00947 * 2 1 3 29 29 H 1.00892 * 111.00423 * 303.96172 * 3 2 1 30 30 H 1.09001 * 109.47194 * 299.99524 * 6 4 3 31 31 H 1.08992 * 109.47399 * 59.99697 * 6 4 3 32 32 H 1.09004 * 109.46724 * 180.02562 * 6 4 3 33 33 H 1.08007 * 125.90300 * 359.97438 * 8 7 4 34 34 H 1.09005 * 109.47522 * 65.02870 * 11 10 9 35 35 H 1.09002 * 109.47197 * 185.02978 * 11 10 9 36 36 H 1.08999 * 109.47226 * 300.00243 * 12 11 10 37 37 H 1.09007 * 109.47287 * 59.99691 * 12 11 10 38 38 H 1.09001 * 109.47127 * 300.00193 * 14 13 12 39 39 H 1.09010 * 109.46803 * 59.99710 * 14 13 12 40 40 H 0.97001 * 119.99747 * 180.02562 * 18 17 15 41 41 H 1.08005 * 126.12900 * 180.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4241 -0.0006 5 1 3.8741 0.5921 0.5885 6 6 4.0007 1.3124 -1.4379 7 6 3.9563 2.7246 0.6000 8 6 3.3836 3.9827 0.3868 9 7 4.0616 4.8628 1.0780 10 7 5.0948 4.1929 1.7458 11 6 6.0931 4.8068 2.6249 12 6 6.8070 5.9344 1.8767 13 8 7.7812 6.5328 2.7339 14 6 8.5085 7.6038 2.1288 15 6 9.5029 8.1570 3.1167 16 1 9.5723 7.7334 4.1077 17 6 10.3234 9.2047 2.7558 18 7 10.2385 9.7208 1.5491 19 14 11.5566 9.8900 3.9801 20 1 12.5007 8.8176 4.3846 21 1 12.3121 11.0029 3.3513 22 1 10.8373 10.3939 5.1776 23 6 5.0085 2.8823 1.4361 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5139 0.8898 29 1 1.6442 1.9013 -0.7812 30 1 3.6621 0.3718 -1.8723 31 1 3.6148 2.1443 -2.0269 32 1 5.0903 1.3410 -1.4383 33 1 2.5279 4.1914 -0.2382 34 1 5.5994 5.2123 3.5080 35 1 6.8212 4.0546 2.9288 36 1 7.3008 5.5289 0.9936 37 1 6.0790 6.6866 1.5726 38 1 9.0371 7.2334 1.2505 39 1 7.8155 8.3907 1.8307 40 1 10.8160 10.4576 1.2950 41 1 5.6618 2.0994 1.7922 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385303656.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:52 Heat of formation + Delta-G solvation = -1.699320 kcal Electronic energy + Delta-G solvation = -19421.810716 eV Core-core repulsion = 16337.326099 eV Total energy + Delta-G solvation = -3084.484617 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.17149 -38.87126 -38.06875 -35.24368 -34.50744 -33.20391 -31.01894 -29.86437 -28.73544 -28.38326 -24.80872 -24.28139 -23.78464 -22.91064 -21.60121 -20.63893 -18.69685 -18.15554 -17.19629 -17.04895 -16.51361 -16.36010 -16.00847 -15.74168 -15.50578 -15.06241 -14.84620 -14.38758 -14.15291 -13.93059 -13.78644 -13.51859 -13.18117 -12.97639 -12.87780 -12.66995 -12.56684 -12.48314 -12.27629 -12.18457 -12.05593 -11.91014 -11.39654 -11.30681 -10.94236 -10.39562 -10.38205 -9.37207 -9.13997 -8.35734 -6.49705 1.00210 1.39187 1.44840 1.48253 1.54252 1.93861 2.33010 2.98134 3.02051 3.35660 3.69691 3.96867 3.99363 4.10612 4.21426 4.26166 4.30082 4.37484 4.46041 4.51718 4.55539 4.61375 4.71305 4.79529 4.79731 4.93002 4.95629 5.07219 5.10022 5.19615 5.26729 5.33545 5.41551 5.49589 5.78432 5.87524 6.09287 6.26423 6.39328 6.58945 6.70484 6.83046 7.21848 8.76550 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.060617 B = 0.002519 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.804533 B =11113.338456 C =11184.271926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 N -0.692 5.692 4 C 0.172 3.828 5 H 0.087 0.913 6 C -0.171 4.171 7 C -0.227 4.227 8 C 0.061 3.939 9 N -0.345 5.345 10 N -0.377 5.377 11 C 0.150 3.850 12 C 0.056 3.944 13 O -0.401 6.401 14 C 0.211 3.789 15 C -0.551 4.551 16 H 0.068 0.932 17 C 0.004 3.996 18 N -0.932 5.932 19 Si 0.989 3.011 20 H -0.262 1.262 21 H -0.276 1.276 22 H -0.264 1.264 23 C 0.058 3.942 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.036 0.964 28 H 0.068 0.932 29 H 0.344 0.656 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.194 0.806 34 H 0.092 0.908 35 H 0.131 0.869 36 H 0.039 0.961 37 H 0.035 0.965 38 H -0.012 1.012 39 H -0.016 1.016 40 H 0.272 0.728 41 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.629 -21.622 -4.368 27.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.074 4.074 3 N -0.324 5.324 4 C 0.061 3.939 5 H 0.106 0.894 6 C -0.230 4.230 7 C -0.239 4.239 8 C -0.125 4.125 9 N -0.167 5.167 10 N -0.161 5.161 11 C 0.028 3.972 12 C -0.022 4.022 13 O -0.320 6.320 14 C 0.136 3.864 15 C -0.588 4.588 16 H 0.086 0.914 17 C -0.195 4.195 18 N -0.570 5.570 19 Si 0.811 3.189 20 H -0.187 1.187 21 H -0.201 1.201 22 H -0.189 1.189 23 C -0.088 4.088 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.055 0.945 28 H 0.086 0.914 29 H 0.163 0.837 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.211 0.789 34 H 0.110 0.890 35 H 0.149 0.851 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.006 0.994 39 H 0.001 0.999 40 H 0.081 0.919 41 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -15.359 -20.182 -3.184 25.561 hybrid contribution 0.601 -0.152 -1.247 1.393 sum -14.758 -20.334 -4.431 25.513 Atomic orbital electron populations 1.21742 0.94608 1.02169 1.02027 1.21953 0.95938 0.88886 1.00603 1.60497 1.07082 1.14200 1.50576 1.19593 0.87292 0.92448 0.94615 0.89439 1.22415 1.02020 1.01816 0.96711 1.20138 1.00393 0.96218 1.07185 1.23989 0.99374 0.90919 0.98208 1.77382 1.02152 1.23193 1.13944 1.48471 1.23564 1.06036 1.37985 1.21379 0.88781 0.96352 0.90665 1.22473 0.90993 0.95363 0.93346 1.87717 1.52144 1.51366 1.40797 1.19879 0.89667 0.83407 0.93447 1.21350 1.19677 1.17661 1.00159 0.91354 1.26058 0.99398 0.96089 0.97964 1.70079 1.40411 1.25869 1.20684 0.85146 0.77776 0.77962 0.78006 1.18663 1.20089 1.18906 1.22885 1.00434 0.86832 0.98665 0.92942 0.92541 0.91273 0.94531 0.91365 0.83718 0.91635 0.92702 0.92381 0.78943 0.89023 0.85134 0.94284 0.94649 0.99424 0.99863 0.91936 0.77983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.17 71.98 0.73 -0.77 16 2 C 0.06 0.62 6.20 86.30 0.54 1.16 16 3 N -0.69 -9.87 5.99 -495.45 -2.97 -12.84 16 4 C 0.17 2.59 3.02 44.17 0.13 2.72 16 5 H 0.09 1.19 7.79 -2.39 -0.02 1.18 16 6 C -0.17 -2.28 9.14 71.98 0.66 -1.62 16 7 C -0.23 -4.81 5.09 -20.14 -0.10 -4.91 16 8 C 0.06 1.54 11.67 85.23 0.99 2.53 16 9 N -0.35 -11.14 12.42 -57.02 -0.71 -11.85 16 10 N -0.38 -10.87 3.68 -348.06 -1.28 -12.15 16 11 C 0.15 4.44 6.88 86.38 0.59 5.04 16 12 C 0.06 2.23 6.12 71.98 0.44 2.67 16 13 O -0.40 -19.74 10.33 -148.98 -1.54 -21.28 16 14 C 0.21 12.14 5.69 71.24 0.41 12.55 16 15 C -0.55 -32.96 9.43 25.60 0.24 -32.72 16 16 H 0.07 3.97 7.81 -2.91 -0.02 3.95 16 17 C 0.00 0.20 5.46 84.66 0.46 0.67 16 18 N -0.93 -56.68 13.29 21.45 0.28 -56.40 16 19 Si 0.99 44.26 29.54 68.60 2.03 46.29 16 20 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 21 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 23 C 0.06 1.27 11.36 83.54 0.95 2.22 16 24 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 26 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.04 0.36 7.44 -2.39 -0.02 0.34 16 28 H 0.07 0.81 8.06 -2.39 -0.02 0.79 16 29 H 0.34 4.36 8.47 -89.70 -0.76 3.60 16 30 H 0.06 0.71 7.45 -2.39 -0.02 0.69 16 31 H 0.05 0.78 8.13 -2.39 -0.02 0.76 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.19 3.83 8.06 -2.91 -0.02 3.81 16 34 H 0.09 2.71 8.14 -2.38 -0.02 2.69 16 35 H 0.13 3.09 8.07 -2.39 -0.02 3.07 16 36 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 38 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 39 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 40 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 41 H 0.20 2.88 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -71.00 347.72 2.09 -68.90 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 0.23 Total: 9.79 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 6.04 Total: -10.46 kcal Atomic # 7 Polarization: -88.57 SS G_CDS: -4.67 Total: -93.24 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -1.54 Total: -21.28 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -71.00 2.09 -68.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385303656.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.204 kcal (2) G-P(sol) polarization free energy of solvation -70.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds