Wall clock time and date at job start Mon Mar 30 2020 05:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00165 * 2 1 4 4 H 1.48494 * 109.47179 * 270.00148 * 3 2 1 5 5 H 1.48503 * 109.47129 * 30.00234 * 3 2 1 6 6 H 1.48501 * 109.47064 * 150.00120 * 3 2 1 7 7 C 1.37873 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00284 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00414 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47357 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46753 * 180.02562 * 10 9 7 12 12 C 1.53010 * 109.46942 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.46974 * 179.97438 * 12 11 10 14 14 C 1.47964 * 110.99882 * 169.99751 * 13 12 11 15 15 C 1.53929 * 86.18040 * 222.41323 * 14 13 12 16 16 N 1.46904 * 113.73116 * 138.07745 * 15 14 13 17 17 C 1.46959 * 111.00007 * 181.89708 * 16 15 14 18 18 C 1.53053 * 109.36396 * 176.81123 * 17 16 15 19 19 N 1.46955 * 109.36242 * 58.40715 * 18 17 16 20 20 C 1.46955 * 110.87898 * 300.67842 * 19 18 17 21 21 C 1.46955 * 110.99824 * 58.10327 * 16 15 14 22 22 C 1.48188 * 111.07389 * 70.56539 * 13 12 11 23 23 H 0.97002 * 119.99930 * 359.97438 * 1 2 3 24 24 H 1.09008 * 109.46388 * 60.00242 * 9 7 2 25 25 H 1.09003 * 109.47283 * 300.00941 * 9 7 2 26 26 H 1.08994 * 109.47004 * 60.00172 * 10 9 7 27 27 H 1.09005 * 109.47072 * 299.99976 * 10 9 7 28 28 H 1.08994 * 109.47637 * 60.00055 * 11 10 9 29 29 H 1.08999 * 109.47240 * 299.99808 * 11 10 9 30 30 H 1.08994 * 109.47053 * 59.99522 * 12 11 10 31 31 H 1.08999 * 109.46853 * 299.99869 * 12 11 10 32 32 H 1.09007 * 113.75730 * 108.09449 * 14 13 12 33 33 H 1.09000 * 113.86084 * 336.74957 * 14 13 12 34 34 H 1.09002 * 113.73961 * 269.25250 * 15 14 13 35 35 H 1.09004 * 109.48713 * 56.84728 * 17 16 15 36 36 H 1.08995 * 109.51046 * 296.79346 * 17 16 15 37 37 H 1.08998 * 109.48872 * 298.43541 * 18 17 16 38 38 H 1.09000 * 109.50504 * 178.38134 * 18 17 16 39 39 H 1.00901 * 111.00068 * 64.54233 * 19 18 17 40 40 H 1.09000 * 109.49195 * 179.29379 * 20 19 18 41 41 H 1.09005 * 109.48958 * 299.35094 * 20 19 18 42 42 H 1.09001 * 109.48648 * 303.15296 * 21 16 15 43 43 H 1.09001 * 109.49302 * 63.19805 * 21 16 15 44 44 H 1.08996 * 113.75705 * 23.23580 * 22 13 12 45 45 H 1.09004 * 113.82569 * 251.80874 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4745 -6.1501 -0.0005 13 7 1.7399 -7.4222 -0.0005 14 6 2.6529 -8.5617 -0.2399 15 6 1.5583 -9.1096 -1.1731 16 7 2.0778 -9.6757 -2.4252 17 6 0.9822 -10.1388 -3.2883 18 6 1.5589 -10.6469 -4.6119 19 7 2.5098 -11.7347 -4.3434 20 6 3.6053 -11.2716 -3.4803 21 6 3.0287 -10.7635 -2.1568 22 6 1.0755 -7.6539 -1.3047 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6246 -2.5571 0.8896 26 1 2.8719 -3.6044 0.8894 27 1 2.8719 -3.6044 -0.8906 28 1 0.8538 -5.0446 -0.8913 29 1 0.8532 -5.0451 0.8886 30 1 3.1005 -6.0924 0.8898 31 1 3.1017 -6.0923 -0.8901 32 1 2.8268 -9.1779 0.6424 33 1 3.5735 -8.2883 -0.7556 34 1 0.8444 -9.7653 -0.6746 35 1 0.2985 -9.3125 -3.4829 36 1 0.4445 -10.9466 -2.7920 37 1 2.0731 -9.8318 -5.1212 38 1 0.7509 -11.0176 -5.2425 39 1 2.0423 -12.5317 -3.9381 40 1 4.2892 -12.0979 -3.2857 41 1 4.1428 -10.4637 -3.9768 42 1 3.8369 -10.3927 -1.5264 43 1 2.5146 -11.5784 -1.6471 44 1 1.5330 -7.1126 -2.1328 45 1 -0.0087 -7.5461 -1.2719 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385348856.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:18 Heat of formation + Delta-G solvation = 25.563296 kcal Electronic energy + Delta-G solvation = -20302.228475 eV Core-core repulsion = 17354.759148 eV Total energy + Delta-G solvation = -2947.469326 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.51844 -38.62445 -35.07076 -33.79227 -32.35327 -31.34259 -29.70970 -27.02543 -26.26480 -25.19290 -23.53385 -23.34641 -21.26680 -20.71397 -19.98074 -19.75670 -17.12347 -16.18922 -15.99525 -15.64655 -15.32887 -15.03542 -14.85811 -14.52345 -14.41792 -14.06064 -13.82016 -13.09854 -12.73597 -12.64549 -12.43000 -12.22419 -11.80892 -11.66641 -11.55845 -11.48925 -11.33767 -11.02035 -10.89766 -10.73261 -10.49314 -10.40905 -10.34340 -9.60446 -9.22888 -9.00387 -8.95415 -8.78137 -8.62298 -8.30751 -5.95869 -3.98025 3.34080 3.37128 3.39999 3.43677 3.89854 3.97517 4.14336 4.49151 4.65407 4.71719 4.74542 4.84980 4.92806 4.98211 5.09361 5.16983 5.19600 5.34870 5.39363 5.40876 5.44074 5.45219 5.54876 5.63434 5.68375 5.75029 5.84890 5.92128 6.11392 6.23726 6.36211 6.50179 6.61131 6.69492 6.72429 6.83940 6.95270 6.98745 7.06337 7.24317 7.73228 7.89255 8.05355 8.48237 9.09495 9.65713 11.15554 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.036080 B = 0.002705 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.856715 B =10349.318364 C =10516.714973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.112 4.112 12 C 0.026 3.974 13 N -0.480 5.480 14 C 0.011 3.989 15 C 0.047 3.953 16 N -0.525 5.525 17 C 0.017 3.983 18 C 0.059 3.941 19 N -0.687 5.687 20 C 0.059 3.941 21 C 0.016 3.984 22 C 0.020 3.980 23 H 0.260 0.740 24 H 0.014 0.986 25 H 0.015 0.985 26 H 0.046 0.954 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.039 0.961 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.031 0.969 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.337 0.663 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.031 0.969 44 H 0.080 0.920 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.157 -25.396 -5.821 26.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.150 4.150 12 C -0.103 4.103 13 N -0.203 5.203 14 C -0.118 4.118 15 C -0.062 4.062 16 N -0.250 5.250 17 C -0.113 4.113 18 C -0.071 4.071 19 N -0.315 5.315 20 C -0.071 4.071 21 C -0.114 4.114 22 C -0.109 4.109 23 H 0.069 0.931 24 H 0.032 0.968 25 H 0.034 0.966 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.050 0.950 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.154 0.846 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.049 0.951 44 H 0.099 0.901 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.242 -24.766 -6.057 25.847 hybrid contribution -0.002 0.543 0.711 0.895 sum 4.240 -24.223 -5.346 25.166 Atomic orbital electron populations 1.69973 1.06052 1.26502 1.51084 1.25037 0.94849 0.99236 0.95444 0.86607 0.79853 0.83549 0.78067 1.20692 1.21231 1.19906 1.21293 0.93014 0.91218 1.50258 0.92777 1.19088 0.94019 0.91343 0.97120 1.21595 0.99073 0.93971 1.00048 1.21593 0.97754 0.93684 1.01945 1.22723 0.96655 0.90020 1.00871 1.68556 1.19328 1.02625 1.29761 1.23974 0.95617 0.94209 0.98016 1.23662 0.97187 0.95886 0.89448 1.62402 1.15695 1.31871 1.15062 1.22836 0.93516 0.99752 0.95198 1.22121 0.95387 0.94336 0.95265 1.60731 1.13143 1.08405 1.49255 1.22119 0.93903 1.00373 0.90707 1.22820 0.96745 0.92795 0.98994 1.23971 1.00963 0.93567 0.92427 0.93060 0.96754 0.96649 0.93471 0.93681 0.92703 0.91820 0.90875 0.94243 0.89857 0.90550 0.91070 0.89847 0.95032 0.89827 0.90188 0.84629 0.90264 0.89890 0.89982 0.95066 0.90134 0.89637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.60 13.29 55.43 0.74 -26.87 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.09 29.54 -169.99 -5.02 17.06 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 11 C -0.11 -2.00 5.28 -26.73 -0.14 -2.14 16 12 C 0.03 0.38 4.82 -3.82 -0.02 0.36 16 13 N -0.48 -6.44 6.26 -238.23 -1.49 -7.94 16 14 C 0.01 0.12 6.52 -2.76 -0.02 0.10 16 15 C 0.05 0.48 3.37 -69.41 -0.23 0.24 16 16 N -0.52 -4.84 4.67 -227.89 -1.06 -5.90 16 17 C 0.02 0.14 5.58 -3.76 -0.02 0.11 16 18 C 0.06 0.44 6.72 -3.77 -0.03 0.41 16 19 N -0.69 -5.07 6.91 -113.63 -0.79 -5.85 16 20 C 0.06 0.42 6.72 -3.77 -0.03 0.40 16 21 C 0.02 0.12 5.43 -3.77 -0.02 0.10 16 22 C 0.02 0.24 6.73 -2.63 -0.02 0.22 16 23 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.01 0.40 8.14 -51.92 -0.42 -0.02 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.99 7.55 -51.93 -0.39 0.59 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.04 0.58 7.70 -51.93 -0.40 0.18 16 32 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 33 H 0.08 0.83 7.60 -51.93 -0.39 0.44 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.70 8.00 -51.93 -0.42 0.29 16 36 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.34 2.10 8.89 -39.29 -0.35 1.75 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.63 7.03 -51.93 -0.37 0.26 16 43 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.08 1.05 7.79 -51.93 -0.40 0.64 16 45 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 350.60 15.07 5.28 5.28 Total: -1.00 -30.92 350.60 -12.16 -43.07 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -8.60 Total: -2.71 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -1.21 Total: -16.15 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -2.61 Total: -46.56 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.92 -12.16 -43.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385348856.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.635 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds