Wall clock time and date at job start Mon Mar 30 2020 05:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00165 * 2 1 4 4 H 1.48494 * 109.47179 * 270.00148 * 3 2 1 5 5 H 1.48503 * 109.47129 * 30.00234 * 3 2 1 6 6 H 1.48501 * 109.47064 * 150.00120 * 3 2 1 7 7 C 1.37873 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00284 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00414 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47357 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46753 * 180.02562 * 10 9 7 12 12 C 1.53010 * 109.46942 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.46974 * 179.97438 * 12 11 10 14 14 C 1.47964 * 110.99882 * 169.99751 * 13 12 11 15 15 C 1.53929 * 86.18040 * 222.41323 * 14 13 12 16 16 N 1.46904 * 113.73116 * 138.07745 * 15 14 13 17 17 C 1.46959 * 111.00007 * 181.89708 * 16 15 14 18 18 C 1.53053 * 109.36396 * 176.81123 * 17 16 15 19 19 N 1.46955 * 109.36242 * 58.40715 * 18 17 16 20 20 C 1.46955 * 110.87898 * 300.67842 * 19 18 17 21 21 C 1.46955 * 110.99824 * 58.10327 * 16 15 14 22 22 C 1.48188 * 111.07389 * 70.56539 * 13 12 11 23 23 H 0.97002 * 119.99930 * 359.97438 * 1 2 3 24 24 H 1.09008 * 109.46388 * 60.00242 * 9 7 2 25 25 H 1.09003 * 109.47283 * 300.00941 * 9 7 2 26 26 H 1.08994 * 109.47004 * 60.00172 * 10 9 7 27 27 H 1.09005 * 109.47072 * 299.99976 * 10 9 7 28 28 H 1.08994 * 109.47637 * 60.00055 * 11 10 9 29 29 H 1.08999 * 109.47240 * 299.99808 * 11 10 9 30 30 H 1.08994 * 109.47053 * 59.99522 * 12 11 10 31 31 H 1.08999 * 109.46853 * 299.99869 * 12 11 10 32 32 H 1.09007 * 113.75730 * 108.09449 * 14 13 12 33 33 H 1.09000 * 113.86084 * 336.74957 * 14 13 12 34 34 H 1.09002 * 113.73961 * 269.25250 * 15 14 13 35 35 H 1.09004 * 109.48713 * 56.84728 * 17 16 15 36 36 H 1.08995 * 109.51046 * 296.79346 * 17 16 15 37 37 H 1.08998 * 109.48872 * 298.43541 * 18 17 16 38 38 H 1.09000 * 109.50504 * 178.38134 * 18 17 16 39 39 H 1.00901 * 111.00068 * 64.54233 * 19 18 17 40 40 H 1.09000 * 109.49195 * 179.29379 * 20 19 18 41 41 H 1.09005 * 109.48958 * 299.35094 * 20 19 18 42 42 H 1.09001 * 109.48648 * 303.15296 * 21 16 15 43 43 H 1.09001 * 109.49302 * 63.19805 * 21 16 15 44 44 H 1.08996 * 113.75705 * 23.23580 * 22 13 12 45 45 H 1.09004 * 113.82569 * 251.80874 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4745 -6.1501 -0.0005 13 7 1.7399 -7.4222 -0.0005 14 6 2.6529 -8.5617 -0.2399 15 6 1.5583 -9.1096 -1.1731 16 7 2.0778 -9.6757 -2.4252 17 6 0.9822 -10.1388 -3.2883 18 6 1.5589 -10.6469 -4.6119 19 7 2.5098 -11.7347 -4.3434 20 6 3.6053 -11.2716 -3.4803 21 6 3.0287 -10.7635 -2.1568 22 6 1.0755 -7.6539 -1.3047 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6246 -2.5571 0.8896 26 1 2.8719 -3.6044 0.8894 27 1 2.8719 -3.6044 -0.8906 28 1 0.8538 -5.0446 -0.8913 29 1 0.8532 -5.0451 0.8886 30 1 3.1005 -6.0924 0.8898 31 1 3.1017 -6.0923 -0.8901 32 1 2.8268 -9.1779 0.6424 33 1 3.5735 -8.2883 -0.7556 34 1 0.8444 -9.7653 -0.6746 35 1 0.2985 -9.3125 -3.4829 36 1 0.4445 -10.9466 -2.7920 37 1 2.0731 -9.8318 -5.1212 38 1 0.7509 -11.0176 -5.2425 39 1 2.0423 -12.5317 -3.9381 40 1 4.2892 -12.0979 -3.2857 41 1 4.1428 -10.4637 -3.9768 42 1 3.8369 -10.3927 -1.5264 43 1 2.5146 -11.5784 -1.6471 44 1 1.5330 -7.1126 -2.1328 45 1 -0.0087 -7.5461 -1.2719 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385348856.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:18 Heat of formation + Delta-G solvation = 1.980461 kcal Electronic energy + Delta-G solvation = -20303.251103 eV Core-core repulsion = 17354.759148 eV Total energy + Delta-G solvation = -2948.491955 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.38630 -39.37762 -36.68187 -35.00093 -34.07456 -31.94541 -31.28133 -28.41815 -27.22507 -26.34979 -24.88478 -24.09715 -22.59603 -21.73986 -21.44062 -20.64335 -18.45329 -17.87025 -16.98303 -16.58946 -16.48352 -16.06552 -16.02715 -15.55140 -15.33003 -14.99719 -14.86530 -14.50397 -14.16045 -13.75802 -13.66374 -13.40533 -13.23182 -12.93127 -12.77557 -12.48412 -12.31089 -12.26939 -12.23189 -12.10285 -12.04824 -11.80273 -11.51146 -11.35486 -11.31594 -10.95537 -10.56896 -9.87505 -9.56907 -9.26167 -8.21137 -6.32954 1.38677 1.40672 1.51868 2.39970 2.62609 3.04386 3.11499 3.29922 3.34927 3.89599 3.95685 4.05562 4.07229 4.10030 4.21279 4.23961 4.27509 4.40182 4.48542 4.52694 4.55788 4.62822 4.66633 4.70733 4.73302 4.80590 4.84160 4.86207 4.98225 5.04281 5.15755 5.18040 5.24569 5.30621 5.39053 5.52747 5.74944 5.84837 5.90568 5.98676 6.02611 6.07132 6.24095 6.45068 6.84430 7.36491 8.90945 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.036080 B = 0.002705 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.856715 B =10349.318364 C =10516.714973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.024 3.976 10 C -0.096 4.096 11 C -0.101 4.101 12 C 0.037 3.963 13 N -0.496 5.496 14 C 0.018 3.982 15 C 0.062 3.938 16 N -0.535 5.535 17 C 0.019 3.981 18 C 0.063 3.937 19 N -0.692 5.692 20 C 0.062 3.938 21 C 0.019 3.981 22 C 0.016 3.984 23 H 0.264 0.736 24 H -0.012 1.012 25 H -0.012 1.012 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.036 0.964 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.345 0.655 40 H 0.095 0.905 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.036 0.964 44 H 0.071 0.929 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.588 -26.343 -5.936 27.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.013 4.013 10 C -0.134 4.134 11 C -0.139 4.139 12 C -0.091 4.091 13 N -0.218 5.218 14 C -0.111 4.111 15 C -0.047 4.047 16 N -0.261 5.261 17 C -0.111 4.111 18 C -0.067 4.067 19 N -0.321 5.321 20 C -0.068 4.068 21 C -0.110 4.110 22 C -0.113 4.113 23 H 0.073 0.927 24 H 0.007 0.993 25 H 0.007 0.993 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.115 0.885 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.055 0.945 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.163 0.837 40 H 0.114 0.886 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.054 0.946 44 H 0.089 0.911 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.682 -25.741 -6.176 27.074 hybrid contribution -0.494 0.802 0.728 1.191 sum 5.188 -24.939 -5.447 26.049 Atomic orbital electron populations 1.70111 1.07900 1.27810 1.51740 1.26042 0.95816 1.03555 0.94686 0.85412 0.78651 0.78205 0.78575 1.19645 1.20628 1.18650 1.21739 0.93580 0.92474 1.50501 0.92142 1.19012 0.94477 0.93337 0.94514 1.21397 0.97962 0.93562 1.00473 1.21407 0.97930 0.93424 1.01148 1.22512 0.95678 0.89628 1.01297 1.68534 1.20192 1.02537 1.30572 1.23995 0.95382 0.93015 0.98707 1.23451 0.96733 0.94745 0.89790 1.62380 1.16247 1.32919 1.14581 1.22836 0.93224 0.99643 0.95383 1.22073 0.95622 0.94054 0.94911 1.60720 1.13258 1.08611 1.49517 1.22104 0.93972 1.00524 0.90159 1.22840 0.96409 0.92397 0.99404 1.23957 1.00638 0.95126 0.91563 0.92741 0.99347 0.99337 0.92944 0.93146 0.93270 0.92891 0.90373 0.93846 0.88515 0.90330 0.90889 0.90472 0.94534 0.91215 0.88868 0.83696 0.88635 0.91197 0.89735 0.94561 0.91104 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.58 13.29 21.45 0.28 -58.29 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 3 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.55 -32.13 9.11 25.60 0.23 -31.89 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.02 1.31 4.97 29.85 0.15 1.46 16 10 C -0.10 -4.10 5.15 30.59 0.16 -3.94 16 11 C -0.10 -3.64 5.28 30.60 0.16 -3.48 16 12 C 0.04 1.08 4.82 86.31 0.42 1.49 16 13 N -0.50 -12.78 6.26 -907.61 -5.68 -18.46 16 14 C 0.02 0.35 6.52 86.41 0.56 0.91 16 15 C 0.06 1.17 3.37 46.48 0.16 1.33 16 16 N -0.54 -9.14 4.67 -874.90 -4.09 -13.23 16 17 C 0.02 0.28 5.58 86.31 0.48 0.76 16 18 C 0.06 0.87 6.72 86.31 0.58 1.45 16 19 N -0.69 -9.03 6.91 -513.43 -3.55 -12.58 16 20 C 0.06 0.79 6.72 86.31 0.58 1.37 16 21 C 0.02 0.25 5.43 86.31 0.47 0.72 16 22 C 0.02 0.39 6.73 86.37 0.58 0.97 16 23 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 24 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 25 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 26 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 28 H 0.05 1.80 7.55 -2.39 -0.02 1.79 16 29 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 30 H 0.08 2.17 8.14 -2.39 -0.02 2.16 16 31 H 0.04 1.22 7.70 -2.39 -0.02 1.20 16 32 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.08 1.55 7.60 -2.39 -0.02 1.53 16 34 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.25 8.00 -2.38 -0.02 1.23 16 36 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.35 3.58 8.89 -89.69 -0.80 2.79 16 40 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.08 1.11 7.03 -2.39 -0.02 1.09 16 43 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.07 1.83 7.79 -2.39 -0.02 1.81 16 45 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -66.19 350.60 -5.89 -72.07 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.13 Total: 11.88 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 4.99 Total: -28.60 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -13.03 Total: -102.56 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -66.19 -5.89 -72.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385348856.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.052 kcal (2) G-P(sol) polarization free energy of solvation -66.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds