Wall clock time and date at job start Mon Mar 30 2020 04:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46502 * 119.99648 * 2 1 4 4 C 1.50706 * 109.46622 * 269.99313 * 3 2 1 5 5 H 1.08005 * 120.00138 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99722 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00217 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00073 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46845 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47399 * 119.99815 * 8 6 4 11 11 H 1.48498 * 109.47295 * 240.00422 * 8 6 4 12 12 C 1.34769 * 119.99980 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00146 * 180.02562 * 12 2 1 14 14 C 1.50705 * 120.00183 * 0.02562 * 12 2 1 15 15 N 1.46896 * 109.47180 * 179.97438 * 14 12 2 16 16 C 1.48463 * 111.00388 * 52.32921 * 15 14 12 17 17 C 1.54916 * 103.21455 * 159.94053 * 16 15 14 18 18 C 1.54411 * 102.98432 * 322.21510 * 17 16 15 19 19 H 1.09002 * 112.27016 * 260.04227 * 18 17 16 20 20 C 1.54232 * 108.98192 * 134.45797 * 18 17 16 21 21 N 1.48556 * 104.55254 * 223.14843 * 20 18 17 22 22 C 1.48496 * 104.20915 * 39.99013 * 21 20 18 23 23 C 1.47879 * 111.00187 * 169.99884 * 15 14 12 24 24 H 1.08999 * 111.76285 * 336.94621 * 23 15 14 25 25 H 1.09005 * 109.46533 * 90.00333 * 1 2 3 26 26 H 1.08999 * 109.46897 * 210.00189 * 1 2 3 27 27 H 1.08997 * 109.47352 * 330.00998 * 1 2 3 28 28 H 1.08996 * 109.47065 * 149.99995 * 3 2 1 29 29 H 1.08994 * 109.47523 * 29.99471 * 3 2 1 30 30 H 0.97000 * 119.99651 * 0.02562 * 7 6 4 31 31 H 1.08999 * 109.46882 * 299.99369 * 14 12 2 32 32 H 1.08998 * 109.46787 * 59.99447 * 14 12 2 33 33 H 1.08989 * 110.67443 * 278.37829 * 16 15 14 34 34 H 1.09004 * 110.66007 * 41.51529 * 16 15 14 35 35 H 1.08995 * 110.71023 * 203.83371 * 17 16 15 36 36 H 1.09000 * 110.70713 * 80.58910 * 17 16 15 37 37 H 1.08999 * 110.42339 * 341.91556 * 20 18 17 38 38 H 1.09005 * 110.42340 * 104.25779 * 20 18 17 39 39 H 1.00902 * 110.99930 * 280.44610 * 21 20 18 40 40 H 1.08995 * 110.37388 * 201.82912 * 22 21 20 41 41 H 1.09005 * 110.37018 * 79.49816 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0975 1.0959 -2.2418 6 6 3.1269 2.8773 -1.6729 7 7 3.5550 3.6171 -0.6733 8 14 3.4390 3.4161 -3.4341 9 1 2.8609 2.4160 -4.3674 10 1 2.8018 4.7369 -3.6680 11 1 4.9016 3.5237 -3.6670 12 6 2.1389 -1.1671 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 7 2.3400 -3.5888 0.0005 16 6 3.3296 -3.4429 1.0976 17 6 3.8780 -4.8810 1.2735 18 6 2.6253 -5.7584 1.0609 19 1 2.1901 -6.0922 2.0028 20 6 2.9860 -6.9291 0.1238 21 7 1.8385 -7.0229 -0.8150 22 6 1.4912 -5.6092 -1.1085 23 6 1.6511 -4.8752 0.2403 24 1 0.7001 -4.7347 0.7542 25 1 -0.3632 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 3.1499 1.1385 0.5138 29 1 1.6084 2.0284 0.5137 30 1 3.3939 3.3368 0.2412 31 1 0.7585 -2.5299 0.8903 32 1 0.7591 -2.5302 -0.8896 33 1 4.1276 -2.7595 0.8076 34 1 2.8431 -3.1022 2.0116 35 1 4.2805 -5.0200 2.2768 36 1 4.6345 -5.0999 0.5198 37 1 3.9054 -6.7118 -0.4199 38 1 3.0909 -7.8531 0.6925 39 1 1.0613 -7.5052 -0.3891 40 1 0.4622 -5.5365 -1.4604 41 1 2.1764 -5.1960 -1.8488 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385384124.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:53 Heat of formation + Delta-G solvation = -12.197946 kcal Electronic energy + Delta-G solvation = -21136.192270 eV Core-core repulsion = 18051.252399 eV Total energy + Delta-G solvation = -3084.939871 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.38491 -38.83502 -35.69901 -34.77810 -32.92829 -32.18707 -28.96152 -27.94499 -27.31468 -26.03292 -24.80581 -22.67249 -22.08534 -21.25638 -19.60548 -18.73321 -17.05225 -16.94984 -16.43228 -15.63197 -15.39570 -15.07416 -14.75977 -14.27504 -13.73665 -13.56182 -13.37356 -13.02641 -12.70978 -12.58582 -12.32144 -12.08854 -11.90977 -11.69510 -11.55220 -11.30442 -11.24242 -11.11915 -10.94340 -10.76266 -10.58271 -10.52849 -10.11945 -9.16161 -9.10419 -8.70817 -8.37945 -8.30766 -7.63568 -6.38641 -4.10326 3.29876 3.44576 3.49626 3.59868 3.64280 4.05383 4.09665 4.33409 4.54305 4.59079 4.79901 5.01651 5.12492 5.13114 5.21396 5.22006 5.33522 5.37323 5.44262 5.47483 5.54049 5.64630 5.72595 5.81536 5.84865 5.89910 6.03402 6.07313 6.15052 6.34987 6.48445 6.74020 6.95230 7.00847 7.11693 7.16626 7.38466 8.03284 8.25120 8.44351 8.78200 8.99868 9.59304 10.98914 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.029902 B = 0.004273 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.175046 B = 6551.369990 C = 6608.908587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.600 5.600 3 C 0.237 3.763 4 C -0.604 4.604 5 H 0.052 0.948 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 1.077 2.923 9 H -0.290 1.290 10 H -0.287 1.287 11 H -0.286 1.286 12 C 0.506 3.494 13 O -0.526 6.526 14 C 0.029 3.971 15 N -0.487 5.487 16 C 0.033 3.967 17 C -0.116 4.116 18 C -0.136 4.136 19 H 0.081 0.919 20 C 0.050 3.950 21 N -0.669 5.669 22 C 0.054 3.946 23 C 0.030 3.970 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.033 0.967 29 H 0.021 0.979 30 H 0.267 0.733 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.118 0.882 34 H 0.033 0.967 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.332 0.668 40 H 0.069 0.931 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.269 -18.623 4.704 20.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.333 5.333 3 C 0.117 3.883 4 C -0.643 4.643 5 H 0.071 0.929 6 C -0.185 4.185 7 N -0.548 5.548 8 Si 0.906 3.094 9 H -0.216 1.216 10 H -0.213 1.213 11 H -0.212 1.212 12 C 0.292 3.708 13 O -0.403 6.403 14 C -0.102 4.102 15 N -0.212 5.212 16 C -0.094 4.094 17 C -0.155 4.155 18 C -0.156 4.156 19 H 0.100 0.900 20 C -0.080 4.080 21 N -0.295 5.295 22 C -0.077 4.077 23 C -0.081 4.081 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.051 0.949 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.135 0.865 34 H 0.052 0.948 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.146 0.854 40 H 0.087 0.913 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.314 -17.568 2.617 18.540 hybrid contribution -1.899 -0.709 2.640 3.328 sum -7.213 -18.277 5.257 20.340 Atomic orbital electron populations 1.21626 0.81301 1.01503 1.01374 1.47952 1.06120 1.07425 1.71757 1.19354 0.91927 0.78809 0.98233 1.22300 1.40539 1.09540 0.91942 0.92950 1.25818 0.93268 0.93320 1.06062 1.70753 1.44252 1.39692 1.00076 0.83427 0.76751 0.75466 0.73791 1.21562 1.21329 1.21182 1.20110 0.88193 0.84777 0.77738 1.90593 1.13689 1.86598 1.49393 1.22287 0.94985 0.90798 1.02137 1.64727 1.12528 0.99618 1.44313 1.23566 0.97111 0.97244 0.91456 1.22610 0.96569 0.94599 1.01704 1.23326 0.96657 0.96904 0.98738 0.90014 1.23115 0.95859 0.96631 0.92349 1.63324 1.09291 1.14193 1.42670 1.23063 1.01429 0.86773 0.96396 1.23938 0.96073 0.91214 0.96851 0.92070 0.92944 0.92730 0.91432 0.94897 0.96156 0.92253 0.92743 0.88311 0.86452 0.94822 0.91370 0.90311 0.89641 0.91155 0.85353 0.91263 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.36 10.29 59.85 0.62 1.98 16 2 N -0.60 -12.81 2.86 -182.95 -0.52 -13.34 16 3 C 0.24 6.20 4.52 -5.19 -0.02 6.17 16 4 C -0.60 -17.55 9.39 -34.44 -0.32 -17.87 16 5 H 0.05 1.55 7.81 -52.48 -0.41 1.14 16 6 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 7 N -0.91 -28.01 13.65 55.43 0.76 -27.25 16 8 Si 1.08 26.07 29.90 -169.99 -5.08 20.99 16 9 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 C 0.51 10.55 7.38 -10.99 -0.08 10.47 16 13 O -0.53 -13.04 13.07 5.56 0.07 -12.97 16 14 C 0.03 0.45 4.07 -4.98 -0.02 0.43 16 15 N -0.49 -7.32 4.72 -222.60 -1.05 -8.37 16 16 C 0.03 0.51 5.29 -1.95 -0.01 0.50 16 17 C -0.12 -1.37 6.60 -24.98 -0.16 -1.53 16 18 C -0.14 -1.38 4.02 -88.18 -0.35 -1.74 16 19 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 20 C 0.05 0.48 7.01 -2.26 -0.02 0.46 16 21 N -0.67 -6.66 7.62 -109.79 -0.84 -7.50 16 22 C 0.05 0.59 7.16 -2.21 -0.02 0.58 16 23 C 0.03 0.34 3.48 -65.38 -0.23 0.12 16 24 H 0.06 0.65 7.66 -51.93 -0.40 0.26 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.66 6.44 -51.93 -0.33 0.33 16 27 H 0.07 1.03 7.89 -51.93 -0.41 0.62 16 28 H 0.03 0.96 7.28 -51.93 -0.38 0.58 16 29 H 0.02 0.53 7.76 -51.93 -0.40 0.13 16 30 H 0.27 8.14 7.22 -40.82 -0.29 7.85 16 31 H 0.05 0.72 7.13 -51.93 -0.37 0.35 16 32 H 0.10 1.39 8.11 -51.93 -0.42 0.97 16 33 H 0.12 2.21 5.94 -51.94 -0.31 1.90 16 34 H 0.03 0.51 8.02 -51.93 -0.42 0.09 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.95 7.19 -51.93 -0.37 0.58 16 37 H 0.09 0.91 7.19 -51.93 -0.37 0.54 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.33 2.66 8.92 -39.29 -0.35 2.31 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.10 1.29 7.96 -51.93 -0.41 0.88 16 LS Contribution 321.05 15.07 4.84 4.84 Total: -1.00 -33.61 321.05 -9.11 -42.72 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.56 Total: 0.84 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -0.72 Total: 0.04 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -1.65 Total: -56.45 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.07 Total: -12.97 kcal Atomic # 14 Polarization: 26.07 SS G_CDS: -5.08 Total: 20.99 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.61 -9.11 -42.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385384124.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.524 kcal (2) G-P(sol) polarization free energy of solvation -33.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds