Wall clock time and date at job start Mon Mar 30 2020 04:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46901 * 109.46779 * 2 1 4 4 C 1.46902 * 111.00148 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47313 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.46879 * 179.97438 * 5 4 3 7 7 C 1.34675 * 125.98512 * 125.00042 * 6 5 4 8 8 N 1.36879 * 106.81522 * 179.97438 * 7 6 5 9 9 C 1.46499 * 126.39849 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.47021 * 89.99861 * 9 8 7 11 11 O 1.42906 * 109.46836 * 180.02562 * 10 9 8 12 12 C 1.42900 * 113.99414 * 180.02562 * 11 10 9 13 13 C 1.50710 * 109.46865 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99704 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99839 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00547 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99672 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46906 * 89.99858 * 17 15 13 19 19 H 1.48504 * 109.47175 * 209.99844 * 17 15 13 20 20 H 1.48497 * 109.47315 * 330.00142 * 17 15 13 21 21 C 1.35041 * 107.20828 * 0.02562 * 8 7 6 22 22 N 1.30503 * 108.69928 * 359.97438 * 21 8 7 23 23 H 1.09004 * 109.47140 * 299.99825 * 1 2 3 24 24 H 1.08992 * 109.47472 * 60.00018 * 1 2 3 25 25 H 1.08998 * 109.46843 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47285 * 240.00415 * 2 1 3 27 27 H 1.08992 * 109.47445 * 119.99426 * 2 1 3 28 28 H 1.00897 * 111.00248 * 56.04610 * 3 2 1 29 29 H 1.08997 * 109.46943 * 59.99432 * 4 3 2 30 30 H 1.09007 * 109.46792 * 299.99938 * 4 3 2 31 31 H 1.09002 * 109.47155 * 59.99792 * 5 4 3 32 32 H 1.08993 * 109.46997 * 299.99813 * 5 4 3 33 33 H 1.07999 * 126.59056 * 359.73822 * 7 6 5 34 34 H 1.08996 * 109.47327 * 210.00288 * 9 8 7 35 35 H 1.09002 * 109.46825 * 330.00335 * 9 8 7 36 36 H 1.08996 * 109.47418 * 300.00371 * 10 9 8 37 37 H 1.09002 * 109.46934 * 60.00540 * 10 9 8 38 38 H 1.08998 * 109.47753 * 299.99961 * 12 11 10 39 39 H 1.08998 * 109.47209 * 60.00719 * 12 11 10 40 40 H 0.96996 * 120.00476 * 179.97438 * 16 15 13 41 41 H 1.07997 * 125.65385 * 180.02562 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4243 -0.0006 5 6 3.9594 2.8800 0.0001 6 6 5.4658 2.9202 0.0001 7 6 6.2401 3.5666 -0.8923 8 7 7.5394 3.3437 -0.5239 9 6 8.7346 3.8509 -1.2024 10 6 9.1188 5.2089 -0.6115 11 8 10.2844 5.7040 -1.2738 12 6 10.7300 6.9741 -0.7940 13 6 11.9576 7.3975 -1.5589 14 1 12.3576 6.7601 -2.3336 15 6 12.5705 8.5980 -1.2690 16 7 12.0836 9.3740 -0.3254 17 14 14.0924 9.1224 -2.2166 18 1 13.6861 9.9029 -3.4130 19 1 14.9526 9.9632 -1.3457 20 1 14.8484 7.9181 -2.6447 21 6 7.5139 2.5679 0.5811 22 7 6.2704 2.3188 0.8888 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.6441 1.9013 0.7813 29 1 3.8646 0.9205 -0.8908 30 1 3.8654 0.9203 0.8892 31 1 3.5828 3.3834 0.8905 32 1 3.5821 3.3844 -0.8894 33 1 5.9012 4.1459 -1.7384 34 1 9.5567 3.1487 -1.0639 35 1 8.5281 3.9632 -2.2668 36 1 8.2968 5.9111 -0.7500 37 1 9.3254 5.0966 0.4529 38 1 9.9414 7.7131 -0.9355 39 1 10.9706 6.8980 0.2664 40 1 12.5150 10.2184 -0.1212 41 1 8.3791 2.2131 1.1213 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385407053.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:33 Heat of formation + Delta-G solvation = -1.777975 kcal Electronic energy + Delta-G solvation = -19017.652138 eV Core-core repulsion = 15933.164110 eV Total energy + Delta-G solvation = -3084.488027 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.06592 -37.26894 -36.97544 -34.55859 -32.90109 -32.47341 -29.95033 -29.36029 -27.38599 -26.58302 -23.17470 -22.82222 -22.39705 -22.28838 -20.86834 -19.91353 -17.11594 -16.58998 -16.24923 -15.71378 -15.40110 -15.22727 -15.06667 -14.58009 -14.40148 -14.13336 -13.99999 -13.62422 -13.34578 -12.96097 -12.75690 -12.22959 -12.13902 -12.02339 -11.59440 -11.57256 -11.27845 -11.17826 -10.96941 -10.94685 -10.84761 -10.22306 -9.90922 -9.49377 -9.25813 -9.02898 -8.68105 -8.36824 -8.33111 -6.21364 -4.24593 2.06854 2.75978 3.09949 3.23902 3.29311 3.34095 3.93559 4.25321 4.58117 4.63604 4.73059 4.76636 4.91496 4.97762 5.10617 5.14625 5.15228 5.19910 5.27377 5.38923 5.50397 5.52419 5.60396 5.62776 5.68627 5.79670 5.84805 5.94408 5.96895 6.03718 6.37032 6.73495 6.76619 6.91644 7.13392 7.22110 7.25923 7.66161 7.99279 8.09864 8.34708 8.86642 9.40691 10.89951 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.064544 B = 0.002255 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.711405 B =12413.205140 C =12511.684658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 N -0.695 5.695 4 C 0.068 3.932 5 C -0.027 4.027 6 C -0.006 4.006 7 C -0.046 4.046 8 N -0.450 5.450 9 C 0.106 3.894 10 C 0.052 3.948 11 O -0.394 6.394 12 C 0.197 3.803 13 C -0.520 4.520 14 H 0.068 0.932 15 C 0.057 3.943 16 N -0.897 5.897 17 Si 0.911 3.089 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.271 1.271 21 C 0.185 3.815 22 N -0.494 5.494 23 H 0.052 0.948 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.028 0.972 28 H 0.339 0.661 29 H 0.069 0.931 30 H 0.038 0.962 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.173 0.827 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.044 0.956 37 H 0.045 0.955 38 H 0.008 0.992 39 H 0.008 0.992 40 H 0.266 0.734 41 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.463 -15.702 0.679 23.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.076 4.076 3 N -0.326 5.326 4 C -0.062 4.062 5 C -0.065 4.065 6 C -0.135 4.135 7 C -0.180 4.180 8 N -0.133 5.133 9 C -0.016 4.016 10 C -0.027 4.027 11 O -0.313 6.313 12 C 0.123 3.877 13 C -0.558 4.558 14 H 0.086 0.914 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.737 3.263 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.196 1.196 21 C -0.097 4.097 22 N -0.213 5.213 23 H 0.071 0.929 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.046 0.954 28 H 0.157 0.843 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.190 0.810 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.025 0.975 39 H 0.026 0.974 40 H 0.075 0.925 41 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -17.493 -15.972 0.520 23.693 hybrid contribution 1.283 0.877 0.110 1.557 sum -16.210 -15.095 0.630 22.159 Atomic orbital electron populations 1.21772 0.95020 1.01629 1.02390 1.21898 0.95557 0.89645 1.00507 1.60527 1.08529 1.13549 1.49991 1.21852 0.86441 0.96739 1.01135 1.19719 0.87550 0.96480 1.02783 1.20481 0.95685 1.02182 0.95193 1.22531 0.83000 1.08084 1.04343 1.45466 1.06785 1.38009 1.23046 1.21757 0.85306 0.96747 0.97812 1.22441 0.90736 0.93303 0.96240 1.87802 1.41917 1.39976 1.61585 1.20275 0.94653 0.78022 0.94717 1.21020 1.10464 1.04307 1.20008 0.91406 1.24962 0.98108 0.95960 0.95420 1.69955 1.40794 1.12082 1.30692 0.86294 0.81858 0.78635 0.79463 1.20374 1.20980 1.19574 1.24973 0.97289 0.97778 0.89696 1.70122 1.00118 1.24226 1.26812 0.92860 0.91810 0.92302 0.91136 0.95395 0.84329 0.91281 0.94340 0.91175 0.90083 0.81002 0.88015 0.88260 0.93778 0.93727 0.97459 0.97422 0.92479 0.77964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.17 37.16 0.38 -0.57 16 2 C 0.05 0.41 6.41 -3.82 -0.02 0.39 16 3 N -0.69 -6.11 6.50 -113.78 -0.74 -6.85 16 4 C 0.07 0.68 5.65 -3.82 -0.02 0.66 16 5 C -0.03 -0.28 6.04 -27.88 -0.17 -0.44 16 6 C -0.01 -0.08 6.36 -82.85 -0.53 -0.60 16 7 C -0.05 -0.58 11.47 -16.56 -0.19 -0.77 16 8 N -0.45 -5.80 2.75 -118.58 -0.33 -6.12 16 9 C 0.11 1.38 6.52 -4.04 -0.03 1.36 16 10 C 0.05 0.88 6.26 37.16 0.23 1.12 16 11 O -0.39 -8.87 10.33 -35.23 -0.36 -9.23 16 12 C 0.20 5.24 5.69 36.01 0.20 5.44 16 13 C -0.52 -14.87 9.43 -34.44 -0.32 -15.20 16 14 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 17 Si 0.91 21.30 29.54 -169.99 -5.02 16.28 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 C 0.19 2.38 12.56 -90.37 -1.14 1.25 16 22 N -0.49 -7.06 11.23 -10.88 -0.12 -7.18 16 23 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.34 2.65 8.73 -39.29 -0.34 2.30 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.76 8.11 -51.93 -0.42 0.34 16 33 H 0.17 1.77 8.06 -52.49 -0.42 1.34 16 34 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.20 2.00 8.06 -52.49 -0.42 1.57 16 LS Contribution 350.04 15.07 5.28 5.28 Total: -1.00 -31.66 350.04 -9.33 -40.99 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -7.07 Total: -1.73 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -1.70 Total: -5.85 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: -0.45 Total: -45.73 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -0.36 Total: -9.23 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.66 -9.33 -40.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385407053.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.217 kcal (2) G-P(sol) polarization free energy of solvation -31.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds