Wall clock time and date at job start Mon Mar 30 2020 04:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46901 * 109.46779 * 2 1 4 4 C 1.46902 * 111.00148 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47313 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.46879 * 179.97438 * 5 4 3 7 7 C 1.34675 * 125.98512 * 125.00042 * 6 5 4 8 8 N 1.36879 * 106.81522 * 179.97438 * 7 6 5 9 9 C 1.46499 * 126.39849 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.47021 * 89.99861 * 9 8 7 11 11 O 1.42906 * 109.46836 * 180.02562 * 10 9 8 12 12 C 1.42900 * 113.99414 * 180.02562 * 11 10 9 13 13 C 1.50710 * 109.46865 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99704 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99839 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00547 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99672 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46906 * 89.99858 * 17 15 13 19 19 H 1.48504 * 109.47175 * 209.99844 * 17 15 13 20 20 H 1.48497 * 109.47315 * 330.00142 * 17 15 13 21 21 C 1.35041 * 107.20828 * 0.02562 * 8 7 6 22 22 N 1.30503 * 108.69928 * 359.97438 * 21 8 7 23 23 H 1.09004 * 109.47140 * 299.99825 * 1 2 3 24 24 H 1.08992 * 109.47472 * 60.00018 * 1 2 3 25 25 H 1.08998 * 109.46843 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47285 * 240.00415 * 2 1 3 27 27 H 1.08992 * 109.47445 * 119.99426 * 2 1 3 28 28 H 1.00897 * 111.00248 * 56.04610 * 3 2 1 29 29 H 1.08997 * 109.46943 * 59.99432 * 4 3 2 30 30 H 1.09007 * 109.46792 * 299.99938 * 4 3 2 31 31 H 1.09002 * 109.47155 * 59.99792 * 5 4 3 32 32 H 1.08993 * 109.46997 * 299.99813 * 5 4 3 33 33 H 1.07999 * 126.59056 * 359.73822 * 7 6 5 34 34 H 1.08996 * 109.47327 * 210.00288 * 9 8 7 35 35 H 1.09002 * 109.46825 * 330.00335 * 9 8 7 36 36 H 1.08996 * 109.47418 * 300.00371 * 10 9 8 37 37 H 1.09002 * 109.46934 * 60.00540 * 10 9 8 38 38 H 1.08998 * 109.47753 * 299.99961 * 12 11 10 39 39 H 1.08998 * 109.47209 * 60.00719 * 12 11 10 40 40 H 0.96996 * 120.00476 * 179.97438 * 16 15 13 41 41 H 1.07997 * 125.65385 * 180.02562 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4243 -0.0006 5 6 3.9594 2.8800 0.0001 6 6 5.4658 2.9202 0.0001 7 6 6.2401 3.5666 -0.8923 8 7 7.5394 3.3437 -0.5239 9 6 8.7346 3.8509 -1.2024 10 6 9.1188 5.2089 -0.6115 11 8 10.2844 5.7040 -1.2738 12 6 10.7300 6.9741 -0.7940 13 6 11.9576 7.3975 -1.5589 14 1 12.3576 6.7601 -2.3336 15 6 12.5705 8.5980 -1.2690 16 7 12.0836 9.3740 -0.3254 17 14 14.0924 9.1224 -2.2166 18 1 13.6861 9.9029 -3.4130 19 1 14.9526 9.9632 -1.3457 20 1 14.8484 7.9181 -2.6447 21 6 7.5139 2.5679 0.5811 22 7 6.2704 2.3188 0.8888 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.6441 1.9013 0.7813 29 1 3.8646 0.9205 -0.8908 30 1 3.8654 0.9203 0.8892 31 1 3.5828 3.3834 0.8905 32 1 3.5821 3.3844 -0.8894 33 1 5.9012 4.1459 -1.7384 34 1 9.5567 3.1487 -1.0639 35 1 8.5281 3.9632 -2.2668 36 1 8.2968 5.9111 -0.7500 37 1 9.3254 5.0966 0.4529 38 1 9.9414 7.7131 -0.9355 39 1 10.9706 6.8980 0.2664 40 1 12.5150 10.2184 -0.1212 41 1 8.3791 2.2131 1.1213 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385407053.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:32 Heat of formation + Delta-G solvation = -21.339559 kcal Electronic energy + Delta-G solvation = -19018.500392 eV Core-core repulsion = 15933.164110 eV Total energy + Delta-G solvation = -3085.336281 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.05784 -38.86625 -37.81971 -35.72475 -34.85606 -33.40788 -30.88039 -30.61177 -29.01832 -27.73270 -24.72092 -24.19143 -23.64100 -22.95185 -21.87733 -20.87331 -18.73453 -18.22563 -17.11995 -16.95454 -16.93862 -16.70298 -16.07936 -15.95378 -15.32401 -15.19184 -15.00524 -14.82492 -14.44694 -14.27812 -13.91058 -13.72735 -12.97142 -12.91024 -12.85095 -12.79680 -12.61660 -12.48257 -12.30413 -12.23554 -12.07640 -11.87195 -11.36683 -10.96688 -10.90060 -10.56610 -10.37782 -9.41607 -9.30666 -8.35837 -6.49186 1.06437 1.40356 1.42743 1.54626 1.71164 2.10850 2.33628 2.98690 3.14796 3.22738 3.67331 3.70487 3.96424 4.08493 4.12446 4.22582 4.25706 4.32396 4.36110 4.41646 4.51045 4.62249 4.63767 4.72141 4.78150 4.81338 4.96353 5.08492 5.12017 5.14134 5.16693 5.33903 5.38471 5.50333 5.78533 5.88330 6.04356 6.22648 6.40643 6.46988 6.71815 7.10994 7.22740 8.76297 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.064544 B = 0.002255 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.711405 B =12413.205140 C =12511.684658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 N -0.696 5.696 4 C 0.079 3.921 5 C -0.022 4.022 6 C -0.019 4.019 7 C -0.055 4.055 8 N -0.453 5.453 9 C 0.122 3.878 10 C 0.048 3.952 11 O -0.401 6.401 12 C 0.210 3.790 13 C -0.551 4.551 14 H 0.067 0.933 15 C 0.006 3.994 16 N -0.931 5.931 17 Si 0.985 3.015 18 H -0.268 1.268 19 H -0.276 1.276 20 H -0.262 1.262 21 C 0.179 3.821 22 N -0.521 5.521 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.026 0.974 28 H 0.345 0.655 29 H 0.060 0.940 30 H 0.022 0.978 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.192 0.808 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.040 0.960 37 H 0.043 0.957 38 H -0.012 1.012 39 H -0.011 1.011 40 H 0.271 0.729 41 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.316 -16.145 -0.219 23.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.078 4.078 3 N -0.328 5.328 4 C -0.050 4.050 5 C -0.061 4.061 6 C -0.148 4.148 7 C -0.187 4.187 8 N -0.136 5.136 9 C -0.001 4.001 10 C -0.030 4.030 11 O -0.320 6.320 12 C 0.135 3.865 13 C -0.588 4.588 14 H 0.085 0.915 15 C -0.193 4.193 16 N -0.569 5.569 17 Si 0.808 3.192 18 H -0.193 1.193 19 H -0.201 1.201 20 H -0.186 1.186 21 C -0.103 4.103 22 N -0.240 5.240 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.045 0.955 28 H 0.164 0.836 29 H 0.079 0.921 30 H 0.040 0.960 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.209 0.791 34 H 0.137 0.863 35 H 0.130 0.870 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.005 0.995 39 H 0.006 0.994 40 H 0.080 0.920 41 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -17.383 -16.437 -0.374 23.926 hybrid contribution 1.137 0.966 0.453 1.559 sum -16.246 -15.470 0.079 22.434 Atomic orbital electron populations 1.21732 0.93701 1.02427 1.02413 1.21956 0.96636 0.88987 1.00262 1.60533 1.07607 1.14324 1.50339 1.21662 0.87229 0.96265 0.99894 1.19738 0.86254 0.96725 1.03356 1.20893 0.96752 1.02055 0.95056 1.22940 0.82849 1.08080 1.04869 1.45480 1.06786 1.38131 1.23232 1.21597 0.86005 0.94456 0.98000 1.22668 0.88648 0.95406 0.96315 1.87740 1.44057 1.38071 1.62110 1.19885 0.93794 0.79339 0.93465 1.21389 1.11618 1.05148 1.20666 0.91457 1.25988 1.01451 0.95654 0.96196 1.70065 1.42358 1.12570 1.31956 0.85146 0.77457 0.78481 0.78119 1.19308 1.20113 1.18615 1.25533 0.97763 0.97367 0.89616 1.70131 1.00965 1.25198 1.27703 0.92392 0.92175 0.91156 0.91493 0.95549 0.83645 0.92111 0.95974 0.91076 0.88910 0.79061 0.86256 0.86992 0.94196 0.93844 0.99471 0.99354 0.91979 0.75623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.17 71.98 0.73 -0.91 16 2 C 0.05 0.75 6.41 86.30 0.55 1.30 16 3 N -0.70 -11.69 6.50 -513.89 -3.34 -15.03 16 4 C 0.08 1.56 5.65 86.30 0.49 2.05 16 5 C -0.02 -0.44 6.04 29.85 0.18 -0.26 16 6 C -0.02 -0.47 6.36 41.39 0.26 -0.21 16 7 C -0.05 -1.30 11.47 83.09 0.95 -0.34 16 8 N -0.45 -11.01 2.75 -529.07 -1.46 -12.47 16 9 C 0.12 2.96 6.52 86.38 0.56 3.52 16 10 C 0.05 1.62 6.26 71.98 0.45 2.07 16 11 O -0.40 -18.07 10.33 -148.98 -1.54 -19.61 16 12 C 0.21 11.39 5.69 71.24 0.41 11.80 16 13 C -0.55 -31.70 9.43 25.60 0.24 -31.46 16 14 H 0.07 3.78 7.81 -2.91 -0.02 3.76 16 15 C 0.01 0.33 5.46 84.65 0.46 0.79 16 16 N -0.93 -54.93 13.29 21.45 0.28 -54.64 16 17 Si 0.99 43.08 29.54 68.60 2.03 45.10 16 18 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 19 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 20 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 21 C 0.18 4.41 12.56 180.26 2.26 6.68 16 22 N -0.52 -14.57 11.23 -188.32 -2.12 -16.68 16 23 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.35 5.07 8.73 -89.70 -0.78 4.29 16 29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.02 0.50 8.14 -2.38 -0.02 0.49 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.09 1.62 8.11 -2.39 -0.02 1.60 16 33 H 0.19 3.60 8.06 -2.91 -0.02 3.58 16 34 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 38 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 39 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 40 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 41 H 0.23 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -67.42 350.04 1.62 -65.80 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.21 Total: 12.49 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: 7.56 Total: -4.96 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -6.63 Total: -98.82 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -1.54 Total: -19.61 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -67.42 1.62 -65.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385407053.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.460 kcal (2) G-P(sol) polarization free energy of solvation -67.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds