Wall clock time and date at job start Mon Mar 30 2020 04:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47419 * 2 1 4 4 C 1.53006 * 109.46899 * 240.00204 * 2 1 3 5 5 C 1.50699 * 109.47224 * 59.99917 * 4 2 1 6 6 H 1.08003 * 119.99570 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00202 * 180.02562 * 5 4 2 8 8 N 1.31507 * 119.99971 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00036 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46763 * 89.99875 * 9 7 5 11 11 H 1.48489 * 109.47128 * 209.99832 * 9 7 5 12 12 H 1.48501 * 109.47017 * 330.00477 * 9 7 5 13 13 C 1.52997 * 109.47290 * 120.00517 * 2 1 3 14 14 N 1.46900 * 109.47220 * 299.99528 * 13 2 1 15 15 C 1.46894 * 111.00559 * 180.02562 * 14 13 2 16 16 C 1.52997 * 109.47515 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47060 * 180.02562 * 16 15 14 18 18 C 1.50703 * 109.46912 * 179.97438 * 17 16 15 19 19 N 1.33309 * 126.54982 * 269.68790 * 18 17 16 20 20 N 1.29002 * 107.35464 * 179.83401 * 19 18 17 21 21 N 1.28786 * 108.72526 * 0.43219 * 20 19 18 22 22 H 0.96997 * 125.44735 * 179.72062 * 21 20 19 23 23 N 1.28884 * 109.09854 * 359.72584 * 21 20 19 24 24 H 1.08999 * 109.46440 * 299.99957 * 1 2 3 25 25 H 1.09000 * 109.47224 * 59.99719 * 1 2 3 26 26 H 1.08995 * 109.47458 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46838 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47152 * 300.00325 * 3 2 1 29 29 H 1.08994 * 109.46840 * 60.00733 * 3 2 1 30 30 H 1.09004 * 109.47505 * 180.02562 * 4 2 1 31 31 H 1.09005 * 109.46948 * 299.99946 * 4 2 1 32 32 H 0.97001 * 120.00681 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.46989 * 179.97438 * 13 2 1 34 34 H 1.09005 * 109.47424 * 59.99523 * 13 2 1 35 35 H 1.00899 * 110.99900 * 56.04218 * 14 13 2 36 36 H 1.09002 * 109.47104 * 59.99767 * 15 14 13 37 37 H 1.08998 * 109.46828 * 300.00600 * 15 14 13 38 38 H 1.09002 * 109.47153 * 59.99762 * 16 15 14 39 39 H 1.09001 * 109.46832 * 299.99953 * 16 15 14 40 40 H 1.09001 * 109.47194 * 299.99650 * 17 16 15 41 41 H 1.08992 * 109.47399 * 59.99823 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9170 0.8675 -2.3805 7 6 1.8702 -0.4821 -3.7321 8 7 2.6254 -1.5519 -3.8528 9 14 1.2468 0.3981 -5.2572 10 1 2.2249 1.4397 -5.6620 11 1 1.0815 -0.5812 -6.3611 12 1 -0.0612 1.0357 -4.9609 13 6 2.0400 -0.7213 1.2491 14 7 1.5505 -0.0289 2.4487 15 6 2.0219 -0.6947 3.6702 16 6 1.4925 0.0531 4.8955 17 6 1.9841 -0.6400 6.1678 18 6 1.4631 0.0969 7.3747 19 7 2.0653 1.1002 8.0134 20 7 1.2952 1.4547 8.9857 21 7 0.2479 0.7053 8.9780 22 1 -0.4881 0.7606 9.6074 23 7 0.3341 -0.1299 8.0002 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6768 1.9562 0.8900 30 1 3.1300 -0.7217 -1.2492 31 1 1.6766 -1.7489 -1.2493 32 1 2.8597 -1.8834 -4.7338 33 1 3.1300 -0.7217 1.2489 34 1 1.6766 -1.7490 1.2491 35 1 0.5440 0.0413 2.4402 36 1 3.1118 -0.6942 3.6868 37 1 1.6589 -1.7223 3.6872 38 1 0.4026 0.0522 4.8788 39 1 1.8553 1.0808 4.8787 40 1 1.6217 -1.6679 6.1848 41 1 3.0739 -0.6388 6.1843 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000392574335.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:22 Heat of formation + Delta-G solvation = 94.299558 kcal Electronic energy + Delta-G solvation = -19688.772619 eV Core-core repulsion = 16640.743577 eV Total energy + Delta-G solvation = -3048.029042 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.175 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.75965 -37.83168 -36.06618 -34.52016 -33.87980 -32.38200 -31.22827 -27.35415 -26.60602 -26.28911 -24.86332 -24.60185 -22.76342 -21.86604 -21.40070 -19.44428 -17.83487 -17.33303 -16.23920 -15.99378 -15.25852 -14.84066 -14.56094 -14.18537 -13.96282 -13.74357 -13.06654 -12.81298 -12.54711 -12.31206 -12.16921 -11.97235 -11.81097 -11.56999 -11.36065 -11.32065 -11.02160 -10.91741 -10.76677 -10.71439 -10.54917 -10.45874 -10.22412 -10.08873 -9.64961 -8.98830 -8.80286 -8.29488 -8.06352 -5.94062 -3.93979 0.82851 1.80226 2.01205 3.35065 3.41518 3.44242 3.56653 4.01309 4.40470 4.52689 4.86764 4.89364 5.13113 5.25931 5.38460 5.41751 5.44278 5.51605 5.67847 5.74284 5.80112 5.99991 6.06032 6.10476 6.12072 6.29188 6.37200 6.54298 6.69827 6.82274 6.86312 7.24091 7.25792 7.29703 7.43319 7.69517 7.73999 7.88609 7.93193 8.06459 8.51074 9.11427 9.68669 11.17631 Molecular weight = 267.18amu Principal moments of inertia in cm(-1) A = 0.056690 B = 0.002603 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.791664 B =10756.000127 C =10887.321066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.059 4.059 3 C -0.116 4.116 4 C 0.033 3.967 5 C -0.506 4.506 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.070 3.930 14 N -0.688 5.688 15 C 0.060 3.940 16 C -0.111 4.111 17 C -0.024 4.024 18 C 0.182 3.818 19 N -0.274 5.274 20 N -0.055 5.055 21 N -0.233 5.233 22 H 0.473 0.527 23 N -0.302 5.302 24 H 0.033 0.967 25 H 0.064 0.936 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.053 0.947 29 H 0.042 0.958 30 H 0.015 0.985 31 H 0.012 0.988 32 H 0.258 0.742 33 H 0.066 0.934 34 H 0.023 0.977 35 H 0.338 0.662 36 H 0.073 0.927 37 H 0.028 0.972 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.618 1.634 23.633 24.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.059 4.059 3 C -0.173 4.173 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 C -0.058 4.058 14 N -0.320 5.320 15 C -0.070 4.070 16 C -0.151 4.151 17 C -0.065 4.065 18 C -0.101 4.101 19 N -0.147 5.147 20 N -0.050 5.050 21 N -0.079 5.079 22 H 0.327 0.673 23 N -0.154 5.154 24 H 0.052 0.948 25 H 0.083 0.917 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.033 0.967 31 H 0.031 0.969 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.041 0.959 35 H 0.156 0.844 36 H 0.092 0.908 37 H 0.046 0.954 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.979 2.409 23.946 24.394 hybrid contribution -1.364 -0.744 -0.831 1.762 sum -5.343 1.664 23.115 23.783 Atomic orbital electron populations 1.21770 0.96148 1.00325 1.00394 1.20629 0.94685 0.96150 0.94443 1.21599 0.99799 0.95807 1.00139 1.19132 0.96134 0.94977 0.90202 1.21241 1.30745 1.11821 0.90616 0.92309 1.25018 0.95460 0.95115 0.99053 1.69962 1.37399 1.23161 1.23260 0.86664 0.79230 0.79417 0.83108 1.20778 1.21422 1.19969 1.22106 0.99821 0.94630 0.89268 1.60530 1.16300 1.53895 1.01255 1.21892 1.00694 0.95007 0.89431 1.21533 1.00987 1.00759 0.91780 1.20012 1.01960 0.98007 0.86499 1.25804 0.88729 0.95672 0.99873 1.75920 1.23174 1.12572 1.03058 1.78970 0.93867 1.15679 1.16488 1.47805 1.18188 1.20258 1.21622 0.67305 1.74738 1.22218 1.16511 1.01903 0.94836 0.91739 0.94129 0.94152 0.92753 0.93888 0.96659 0.96922 0.93185 0.91515 0.95867 0.84359 0.90815 0.95409 0.91771 0.90345 0.88740 0.88119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 7.89 37.16 0.29 -2.10 16 2 C -0.06 -1.17 0.60 -154.51 -0.09 -1.26 16 3 C -0.12 -2.26 8.06 37.16 0.30 -1.96 16 4 C 0.03 0.83 4.04 -27.88 -0.11 0.72 16 5 C -0.51 -13.86 7.65 -34.44 -0.26 -14.12 16 6 H 0.06 1.57 5.68 -52.48 -0.30 1.27 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 9 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 13 C 0.07 1.20 4.65 -3.83 -0.02 1.18 16 14 N -0.69 -9.66 5.71 -113.78 -0.65 -10.31 16 15 C 0.06 0.66 5.69 -3.83 -0.02 0.64 16 16 C -0.11 -1.06 5.46 -26.73 -0.15 -1.21 16 17 C -0.02 -0.19 5.84 -27.88 -0.16 -0.36 16 18 C 0.18 1.81 7.62 -156.63 -1.19 0.62 16 19 N -0.27 -3.13 12.50 32.45 0.41 -2.72 16 20 N -0.05 -0.53 13.48 60.35 0.81 0.28 16 21 N -0.23 -1.62 7.91 60.34 0.48 -1.14 16 22 H 0.47 1.03 8.96 -340.52 -3.05 -2.02 16 23 N -0.30 -2.75 12.36 32.47 0.40 -2.35 16 24 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 25 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 29 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.34 4.57 6.77 -39.29 -0.27 4.30 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 333.91 15.07 5.03 5.03 Total: -1.00 -32.18 333.91 -8.57 -40.74 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -9.25 Total: -3.59 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -1.52 Total: -16.41 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 2.18 Total: -42.41 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.18 -8.57 -40.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392574335.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.044 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds