Wall clock time and date at job start Mon Mar 30 2020 05:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47129 * 2 1 4 4 H 1.09003 * 109.46888 * 182.12347 * 3 2 1 5 5 C 1.50694 * 109.46788 * 62.12361 * 3 2 1 6 6 H 1.08002 * 120.00071 * 245.58417 * 5 3 2 7 7 C 1.37877 * 120.00103 * 65.59115 * 5 3 2 8 8 N 1.31523 * 119.99753 * 193.60925 * 7 5 3 9 9 Si 1.86796 * 120.00255 * 13.60667 * 7 5 3 10 10 H 1.48497 * 109.47234 * 84.77031 * 9 7 5 11 11 H 1.48499 * 109.47528 * 204.77377 * 9 7 5 12 12 H 1.48508 * 109.46879 * 324.77466 * 9 7 5 13 13 N 1.46904 * 109.46834 * 302.12367 * 3 2 1 14 14 C 1.46953 * 110.99585 * 175.46510 * 13 3 2 15 15 C 1.53046 * 109.38200 * 183.17569 * 14 13 3 16 16 N 1.46959 * 109.36832 * 301.63680 * 15 14 13 17 17 C 1.46900 * 111.00023 * 183.16720 * 16 15 14 18 18 H 1.09005 * 110.27135 * 294.77385 * 17 16 15 19 19 C 1.54598 * 110.30492 * 172.58430 * 17 16 15 20 20 C 1.54937 * 102.91647 * 219.12367 * 19 17 16 21 21 N 1.48529 * 103.23091 * 37.41630 * 20 19 17 22 22 C 1.47907 * 105.81712 * 320.79032 * 21 20 19 23 23 C 1.46955 * 110.89555 * 59.28080 * 16 15 14 24 24 C 1.46948 * 111.00007 * 299.26536 * 13 3 2 25 25 H 1.09004 * 109.47658 * 304.96404 * 1 2 3 26 26 H 1.08999 * 109.47376 * 64.96759 * 1 2 3 27 27 H 1.08996 * 109.47281 * 184.96399 * 1 2 3 28 28 H 1.09000 * 109.47162 * 239.99804 * 2 1 3 29 29 H 1.09001 * 109.47459 * 119.99967 * 2 1 3 30 30 H 0.97007 * 119.99472 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.49530 * 303.15789 * 14 13 3 32 32 H 1.09003 * 109.49076 * 63.19986 * 14 13 3 33 33 H 1.09002 * 109.48851 * 61.58092 * 15 14 13 34 34 H 1.09002 * 109.49315 * 181.64126 * 15 14 13 35 35 H 1.08994 * 110.72542 * 337.48259 * 19 17 16 36 36 H 1.09002 * 110.72058 * 100.76823 * 19 17 16 37 37 H 1.09002 * 110.66505 * 278.97695 * 20 19 17 38 38 H 1.08998 * 110.66565 * 155.85342 * 20 19 17 39 39 H 1.00895 * 111.00010 * 81.30282 * 21 20 19 40 40 H 1.08998 * 109.91876 * 265.97662 * 22 21 20 41 41 H 1.08997 * 110.07743 * 144.77581 * 22 21 20 42 42 H 1.09008 * 109.48347 * 180.72619 * 23 16 15 43 43 H 1.08999 * 109.48809 * 60.66652 * 23 16 15 44 44 H 1.09001 * 109.49228 * 296.78188 * 24 13 3 45 45 H 1.09001 * 109.49422 * 56.82530 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1293 1.4428 -0.0381 5 6 1.5810 2.1375 1.2559 6 1 0.8851 2.9611 1.1939 7 6 2.0497 1.7221 2.4842 8 7 1.4618 2.1344 3.5861 9 14 3.5195 0.5736 2.5835 10 1 4.7730 1.3678 2.5276 11 1 3.4703 -0.1845 3.8594 12 1 3.4838 -0.3757 1.4420 13 7 1.5088 2.1497 -1.1730 14 6 1.8901 3.5687 -1.1497 15 6 1.2534 4.2854 -2.3427 16 7 1.6952 3.6441 -3.5890 17 6 1.1641 4.3513 -4.7619 18 1 0.0776 4.2689 -4.7926 19 6 1.7844 3.7815 -6.0583 20 6 2.0070 5.0486 -6.9217 21 7 2.4242 6.0692 -5.9265 22 6 1.5872 5.8316 -4.7304 23 6 1.3139 2.2251 -3.6121 24 6 1.9511 1.5088 -2.4192 25 1 -0.3634 0.5889 0.8422 26 1 -0.3634 0.4348 -0.9311 27 1 -0.3633 -1.0238 0.0889 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7913 1.8418 4.4503 31 1 1.5407 4.0241 -0.2231 32 1 2.9750 3.6547 -1.2106 33 1 0.1678 4.2231 -2.2672 34 1 1.5587 5.3318 -2.3436 35 1 2.7326 3.2871 -5.8473 36 1 1.0920 3.0972 -6.5487 37 1 1.0809 5.3466 -7.4134 38 1 2.7961 4.8808 -7.6547 39 1 3.4045 5.9792 -5.7056 40 1 0.7048 6.4708 -4.7617 41 1 2.1607 6.0348 -3.8261 42 1 1.6634 1.7698 -4.5389 43 1 0.2290 2.1391 -3.5509 44 1 3.0367 1.5714 -2.4949 45 1 1.6465 0.4622 -2.4180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393885358.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:23 Heat of formation + Delta-G solvation = 25.293920 kcal Electronic energy + Delta-G solvation = -21900.834394 eV Core-core repulsion = 18953.353387 eV Total energy + Delta-G solvation = -2947.481007 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.68918 -37.91560 -35.42448 -32.59092 -31.57245 -30.70530 -29.42686 -28.34791 -26.84707 -24.55347 -23.65769 -22.47177 -21.43541 -20.38636 -19.67125 -18.92023 -17.02537 -16.48463 -15.75296 -15.60100 -14.72435 -14.36633 -14.15388 -14.06516 -13.94203 -13.80534 -13.36520 -12.90612 -12.51030 -12.32453 -12.17369 -11.84013 -11.66361 -11.49206 -11.46855 -11.13909 -10.98649 -10.90241 -10.77408 -10.56177 -10.40609 -10.10838 -10.03343 -9.85463 -9.26747 -8.92686 -8.79626 -8.45583 -8.17166 -7.31779 -6.09761 -4.03840 3.26702 3.35489 3.38059 3.92307 4.14328 4.40992 4.54298 4.75379 4.83644 5.03749 5.17567 5.22394 5.29841 5.38535 5.44721 5.52812 5.64008 5.68388 5.72988 5.81585 5.84338 5.89763 5.98712 6.01353 6.09236 6.22928 6.25349 6.34391 6.41150 6.57424 6.59201 6.71250 6.80896 6.95012 7.09024 7.13106 7.17335 7.27105 7.30789 7.50440 7.68020 7.96746 8.09576 8.65244 8.98995 9.55640 11.02776 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.032690 B = 0.004754 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.328883 B = 5888.908460 C = 6168.250358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.118 4.118 3 C 0.190 3.810 4 H -0.009 1.009 5 C -0.504 4.504 6 H 0.081 0.919 7 C 0.077 3.923 8 N -0.893 5.893 9 Si 0.858 3.142 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.253 1.253 13 N -0.520 5.520 14 C 0.068 3.932 15 C 0.054 3.946 16 N -0.532 5.532 17 C 0.053 3.947 18 H 0.046 0.954 19 C -0.149 4.149 20 C 0.043 3.957 21 N -0.673 5.673 22 C 0.045 3.955 23 C 0.063 3.937 24 C 0.052 3.948 25 H 0.070 0.930 26 H 0.046 0.954 27 H 0.020 0.980 28 H 0.026 0.974 29 H 0.057 0.943 30 H 0.263 0.737 31 H 0.096 0.904 32 H 0.027 0.973 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.339 0.661 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.038 0.962 44 H 0.028 0.972 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.753 2.360 -17.461 17.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.156 4.156 3 C 0.083 3.917 4 H 0.008 0.992 5 C -0.542 4.542 6 H 0.099 0.901 7 C -0.126 4.126 8 N -0.531 5.531 9 Si 0.686 3.314 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.178 1.178 13 N -0.245 5.245 14 C -0.061 4.061 15 C -0.074 4.074 16 N -0.258 5.258 17 C -0.057 4.057 18 H 0.064 0.936 19 C -0.189 4.189 20 C -0.086 4.086 21 N -0.300 5.300 22 C -0.085 4.085 23 C -0.066 4.066 24 C -0.077 4.077 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.039 0.961 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.154 0.846 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.056 0.944 44 H 0.046 0.954 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.371 2.940 -17.514 17.763 hybrid contribution 1.190 -1.604 0.638 2.097 sum 1.561 1.336 -16.876 17.001 Atomic orbital electron populations 1.21463 0.95721 0.98288 1.02607 1.21960 0.97076 0.97756 0.98848 1.19596 0.91868 0.91101 0.89117 0.99175 1.20834 1.27532 1.17814 0.88038 0.90149 1.24843 0.96382 0.95684 0.95650 1.69949 1.39461 1.45881 0.97771 0.87351 0.84239 0.81981 0.77850 1.20677 1.21502 1.17792 1.62090 1.59478 1.01673 1.01298 1.22028 0.97214 0.89494 0.97328 1.22328 0.98278 0.97846 0.88939 1.62358 1.59243 1.02514 1.01655 1.22926 0.97091 0.94757 0.90937 0.93641 1.23178 1.01878 0.98721 0.95102 1.23067 1.01248 0.89269 0.95064 1.62745 1.08606 1.49059 1.09589 1.22881 0.98324 0.93626 0.93706 1.22124 0.98335 0.87947 0.98154 1.22149 0.97084 0.98231 0.90222 0.91085 0.93486 0.96116 0.95513 0.92419 0.92711 0.88594 0.95457 0.94285 0.90810 0.90323 0.91287 0.90452 0.90826 0.84555 0.90725 0.90139 0.91383 0.94400 0.95404 0.90650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.55 9.52 37.15 0.35 -2.19 16 2 C -0.12 -2.56 4.68 -26.73 -0.13 -2.69 16 3 C 0.19 4.39 1.33 -68.86 -0.09 4.30 16 4 H -0.01 -0.22 6.88 -51.93 -0.36 -0.58 16 5 C -0.50 -13.45 6.94 -34.44 -0.24 -13.69 16 6 H 0.08 2.35 6.85 -52.49 -0.36 1.99 16 7 C 0.08 2.13 5.37 -17.82 -0.10 2.03 16 8 N -0.89 -26.47 13.96 55.43 0.77 -25.69 16 9 Si 0.86 20.89 25.90 -169.99 -4.40 16.49 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.25 -5.83 5.31 56.52 0.30 -5.53 16 13 N -0.52 -10.45 3.81 -227.89 -0.87 -11.32 16 14 C 0.07 1.29 5.32 -3.77 -0.02 1.27 16 15 C 0.05 0.83 5.30 -3.77 -0.02 0.81 16 16 N -0.53 -7.48 4.51 -224.86 -1.01 -8.50 16 17 C 0.05 0.62 2.72 -66.36 -0.18 0.44 16 18 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 19 C -0.15 -1.49 5.53 -24.87 -0.14 -1.63 16 20 C 0.04 0.39 7.55 -1.90 -0.01 0.38 16 21 N -0.67 -6.94 7.51 -110.09 -0.83 -7.77 16 22 C 0.04 0.50 6.69 -2.75 -0.02 0.48 16 23 C 0.06 0.91 5.45 -3.77 -0.02 0.89 16 24 C 0.05 0.89 5.33 -3.77 -0.02 0.87 16 25 H 0.07 1.67 7.12 -51.93 -0.37 1.30 16 26 H 0.05 0.92 7.71 -51.93 -0.40 0.52 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.03 0.52 6.46 -51.93 -0.34 0.18 16 29 H 0.06 1.32 4.68 -51.93 -0.24 1.08 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.10 2.03 6.20 -51.93 -0.32 1.71 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 1.02 6.03 -51.93 -0.31 0.71 16 35 H 0.08 0.86 7.90 -51.93 -0.41 0.45 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.34 3.29 8.92 -39.29 -0.35 2.94 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.95 6.09 -51.93 -0.32 0.63 16 42 H 0.07 0.87 7.04 -51.92 -0.37 0.50 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 1.27 6.21 -51.93 -0.32 0.94 16 LS Contribution 324.74 15.07 4.89 4.89 Total: -1.00 -28.20 324.74 -10.00 -38.21 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -7.93 Total: 2.42 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -0.63 Total: -8.73 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: -1.94 Total: -53.28 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.40 Total: 16.49 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.20 -10.00 -38.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393885358.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.500 kcal (2) G-P(sol) polarization free energy of solvation -28.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds