Wall clock time and date at job start Mon Mar 30 2020 05:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47129 * 2 1 4 4 H 1.09003 * 109.46888 * 182.12347 * 3 2 1 5 5 C 1.50694 * 109.46788 * 62.12361 * 3 2 1 6 6 H 1.08002 * 120.00071 * 245.58417 * 5 3 2 7 7 C 1.37877 * 120.00103 * 65.59115 * 5 3 2 8 8 N 1.31523 * 119.99753 * 193.60925 * 7 5 3 9 9 Si 1.86796 * 120.00255 * 13.60667 * 7 5 3 10 10 H 1.48497 * 109.47234 * 84.77031 * 9 7 5 11 11 H 1.48499 * 109.47528 * 204.77377 * 9 7 5 12 12 H 1.48508 * 109.46879 * 324.77466 * 9 7 5 13 13 N 1.46904 * 109.46834 * 302.12367 * 3 2 1 14 14 C 1.46953 * 110.99585 * 175.46510 * 13 3 2 15 15 C 1.53046 * 109.38200 * 183.17569 * 14 13 3 16 16 N 1.46959 * 109.36832 * 301.63680 * 15 14 13 17 17 C 1.46900 * 111.00023 * 183.16720 * 16 15 14 18 18 H 1.09005 * 110.27135 * 294.77385 * 17 16 15 19 19 C 1.54598 * 110.30492 * 172.58430 * 17 16 15 20 20 C 1.54937 * 102.91647 * 219.12367 * 19 17 16 21 21 N 1.48529 * 103.23091 * 37.41630 * 20 19 17 22 22 C 1.47907 * 105.81712 * 320.79032 * 21 20 19 23 23 C 1.46955 * 110.89555 * 59.28080 * 16 15 14 24 24 C 1.46948 * 111.00007 * 299.26536 * 13 3 2 25 25 H 1.09004 * 109.47658 * 304.96404 * 1 2 3 26 26 H 1.08999 * 109.47376 * 64.96759 * 1 2 3 27 27 H 1.08996 * 109.47281 * 184.96399 * 1 2 3 28 28 H 1.09000 * 109.47162 * 239.99804 * 2 1 3 29 29 H 1.09001 * 109.47459 * 119.99967 * 2 1 3 30 30 H 0.97007 * 119.99472 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.49530 * 303.15789 * 14 13 3 32 32 H 1.09003 * 109.49076 * 63.19986 * 14 13 3 33 33 H 1.09002 * 109.48851 * 61.58092 * 15 14 13 34 34 H 1.09002 * 109.49315 * 181.64126 * 15 14 13 35 35 H 1.08994 * 110.72542 * 337.48259 * 19 17 16 36 36 H 1.09002 * 110.72058 * 100.76823 * 19 17 16 37 37 H 1.09002 * 110.66505 * 278.97695 * 20 19 17 38 38 H 1.08998 * 110.66565 * 155.85342 * 20 19 17 39 39 H 1.00895 * 111.00010 * 81.30282 * 21 20 19 40 40 H 1.08998 * 109.91876 * 265.97662 * 22 21 20 41 41 H 1.08997 * 110.07743 * 144.77581 * 22 21 20 42 42 H 1.09008 * 109.48347 * 180.72619 * 23 16 15 43 43 H 1.08999 * 109.48809 * 60.66652 * 23 16 15 44 44 H 1.09001 * 109.49228 * 296.78188 * 24 13 3 45 45 H 1.09001 * 109.49422 * 56.82530 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1293 1.4428 -0.0381 5 6 1.5810 2.1375 1.2559 6 1 0.8851 2.9611 1.1939 7 6 2.0497 1.7221 2.4842 8 7 1.4618 2.1344 3.5861 9 14 3.5195 0.5736 2.5835 10 1 4.7730 1.3678 2.5276 11 1 3.4703 -0.1845 3.8594 12 1 3.4838 -0.3757 1.4420 13 7 1.5088 2.1497 -1.1730 14 6 1.8901 3.5687 -1.1497 15 6 1.2534 4.2854 -2.3427 16 7 1.6952 3.6441 -3.5890 17 6 1.1641 4.3513 -4.7619 18 1 0.0776 4.2689 -4.7926 19 6 1.7844 3.7815 -6.0583 20 6 2.0070 5.0486 -6.9217 21 7 2.4242 6.0692 -5.9265 22 6 1.5872 5.8316 -4.7304 23 6 1.3139 2.2251 -3.6121 24 6 1.9511 1.5088 -2.4192 25 1 -0.3634 0.5889 0.8422 26 1 -0.3634 0.4348 -0.9311 27 1 -0.3633 -1.0238 0.0889 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7913 1.8418 4.4503 31 1 1.5407 4.0241 -0.2231 32 1 2.9750 3.6547 -1.2106 33 1 0.1678 4.2231 -2.2672 34 1 1.5587 5.3318 -2.3436 35 1 2.7326 3.2871 -5.8473 36 1 1.0920 3.0972 -6.5487 37 1 1.0809 5.3466 -7.4134 38 1 2.7961 4.8808 -7.6547 39 1 3.4045 5.9792 -5.7056 40 1 0.7048 6.4708 -4.7617 41 1 2.1607 6.0348 -3.8261 42 1 1.6634 1.7698 -4.5389 43 1 0.2290 2.1391 -3.5509 44 1 3.0367 1.5714 -2.4949 45 1 1.6465 0.4622 -2.4180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393885358.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:22 Heat of formation + Delta-G solvation = 3.617130 kcal Electronic energy + Delta-G solvation = -21901.774370 eV Core-core repulsion = 18953.353387 eV Total energy + Delta-G solvation = -2948.420984 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.83931 -39.19065 -36.81722 -34.41115 -33.27477 -32.04013 -30.42417 -29.49725 -28.49384 -26.04802 -25.11876 -23.99983 -22.38040 -21.69805 -20.95330 -20.41843 -18.53021 -18.04298 -17.16277 -16.58816 -16.19640 -15.78622 -15.61218 -15.39774 -15.25831 -15.01670 -14.78770 -14.65726 -14.15200 -13.82218 -13.31020 -13.12414 -12.91716 -12.84332 -12.59385 -12.45624 -12.41569 -12.35507 -12.15093 -12.00128 -11.86680 -11.72409 -11.63743 -11.35817 -11.10506 -10.82335 -10.53354 -9.60529 -9.32291 -8.95984 -8.26005 -6.23087 1.32082 1.36370 1.43496 2.35748 2.83654 3.07260 3.22428 3.34626 3.66997 3.97797 4.02537 4.17108 4.24030 4.28690 4.36952 4.43758 4.45926 4.49326 4.51296 4.59361 4.63517 4.70311 4.71815 4.86364 4.94669 4.97214 4.99625 5.04073 5.05527 5.10270 5.15672 5.21331 5.23991 5.36489 5.39718 5.71286 5.78559 5.81332 6.01395 6.05544 6.17102 6.40480 6.44874 6.74162 6.80918 7.39662 8.90137 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.032690 B = 0.004754 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.328883 B = 5888.908460 C = 6168.250358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.118 4.118 3 C 0.194 3.806 4 H -0.019 1.019 5 C -0.495 4.495 6 H 0.040 0.960 7 C 0.023 3.977 8 N -0.942 5.942 9 Si 0.915 3.085 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.227 1.227 13 N -0.529 5.529 14 C 0.072 3.928 15 C 0.067 3.933 16 N -0.534 5.534 17 C 0.053 3.947 18 H 0.043 0.957 19 C -0.142 4.142 20 C 0.047 3.953 21 N -0.679 5.679 22 C 0.048 3.952 23 C 0.069 3.931 24 C 0.052 3.948 25 H 0.031 0.969 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.263 0.737 31 H 0.062 0.938 32 H 0.018 0.982 33 H 0.030 0.970 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.342 0.658 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.095 0.905 43 H 0.033 0.967 44 H 0.023 0.977 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.510 1.116 -20.488 20.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.156 4.156 3 C 0.085 3.915 4 H -0.002 1.002 5 C -0.533 4.533 6 H 0.058 0.942 7 C -0.175 4.175 8 N -0.582 5.582 9 Si 0.740 3.260 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.151 1.151 13 N -0.254 5.254 14 C -0.057 4.057 15 C -0.061 4.061 16 N -0.259 5.259 17 C -0.057 4.057 18 H 0.061 0.939 19 C -0.181 4.181 20 C -0.083 4.083 21 N -0.306 5.306 22 C -0.083 4.083 23 C -0.059 4.059 24 C -0.076 4.076 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.048 0.952 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.158 0.842 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.113 0.887 43 H 0.051 0.949 44 H 0.042 0.958 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.129 1.695 -20.584 20.685 hybrid contribution 0.898 -1.125 1.526 2.097 sum 2.026 0.570 -19.059 19.174 Atomic orbital electron populations 1.21327 0.95121 0.99276 1.01295 1.21911 0.97582 0.96440 0.99680 1.19455 0.91156 0.92119 0.88724 1.00201 1.20984 1.25874 1.16493 0.89935 0.94188 1.25586 0.98968 0.97703 0.95258 1.70087 1.41447 1.48247 0.98405 0.86418 0.80417 0.80515 0.78615 1.20721 1.21520 1.15053 1.62043 1.59572 1.01994 1.01746 1.21911 0.96685 0.89401 0.97700 1.22123 0.97223 0.98307 0.88444 1.62357 1.59378 1.02544 1.01658 1.23007 0.96983 0.95074 0.90650 0.93947 1.23133 1.01638 0.99276 0.94079 1.23120 1.02089 0.88224 0.94842 1.62751 1.08771 1.49699 1.09392 1.22815 0.98383 0.93239 0.93821 1.22083 0.97799 0.88033 0.97957 1.22241 0.97028 0.98847 0.89476 0.94974 0.92637 0.93446 0.92438 0.93607 0.92794 0.91948 0.96417 0.95214 0.89246 0.90831 0.90060 0.90008 0.89142 0.84186 0.90610 0.91065 0.88696 0.94910 0.95832 0.89741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.51 9.52 71.98 0.69 -3.83 16 2 C -0.12 -4.89 4.68 30.59 0.14 -4.75 16 3 C 0.19 8.88 1.33 44.17 0.06 8.93 16 4 H -0.02 -0.93 6.88 -2.39 -0.02 -0.94 16 5 C -0.49 -27.35 6.94 25.60 0.18 -27.17 16 6 H 0.04 2.49 6.85 -2.91 -0.02 2.47 16 7 C 0.02 1.29 5.37 84.65 0.45 1.74 16 8 N -0.94 -58.03 13.96 21.45 0.30 -57.73 16 9 Si 0.92 43.31 25.90 68.60 1.78 45.09 16 10 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 12 H -0.23 -9.74 5.31 99.48 0.53 -9.22 16 13 N -0.53 -21.07 3.81 -874.89 -3.33 -24.41 16 14 C 0.07 2.78 5.32 86.31 0.46 3.24 16 15 C 0.07 2.05 5.30 86.31 0.46 2.50 16 16 N -0.53 -13.99 4.51 -865.34 -3.90 -17.89 16 17 C 0.05 1.11 2.72 45.79 0.12 1.24 16 18 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 19 C -0.14 -2.36 5.53 31.80 0.18 -2.18 16 20 C 0.05 0.69 7.55 86.65 0.65 1.35 16 21 N -0.68 -12.40 7.51 -502.21 -3.77 -16.17 16 22 C 0.05 0.97 6.69 86.44 0.58 1.55 16 23 C 0.07 1.83 5.45 86.31 0.47 2.30 16 24 C 0.05 1.68 5.33 86.31 0.46 2.14 16 25 H 0.03 1.51 7.12 -2.38 -0.02 1.49 16 26 H 0.05 2.09 7.71 -2.39 -0.02 2.07 16 27 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 2.04 6.46 -2.39 -0.02 2.02 16 29 H 0.05 2.00 4.68 -2.39 -0.01 1.99 16 30 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 31 H 0.06 2.81 6.20 -2.39 -0.01 2.80 16 32 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.09 2.44 6.03 -2.39 -0.01 2.42 16 35 H 0.07 1.34 7.90 -2.39 -0.02 1.32 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.34 5.88 8.92 -89.70 -0.80 5.08 16 40 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 1.58 6.09 -2.39 -0.01 1.56 16 42 H 0.09 2.04 7.04 -2.38 -0.02 2.02 16 43 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.08 2.55 6.21 -2.39 -0.01 2.54 16 Total: -1.00 -62.55 324.74 -4.05 -66.60 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -0.02 Total: 17.44 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: 4.90 Total: -12.93 kcal Atomic # 7 Polarization: -105.49 SS G_CDS: -10.71 Total: -116.20 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.78 Total: 45.09 kcal Total: -62.55 -4.05 -66.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393885358.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.218 kcal (2) G-P(sol) polarization free energy of solvation -62.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds