Wall clock time and date at job start Mon Mar 30 2020 05:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47365 * 2 1 4 4 H 1.09004 * 109.47138 * 180.76293 * 3 2 1 5 5 C 1.50703 * 109.47243 * 60.75940 * 3 2 1 6 6 H 1.07994 * 120.00432 * 240.00049 * 5 3 2 7 7 C 1.37877 * 119.99535 * 60.00374 * 5 3 2 8 8 N 1.31513 * 120.00630 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 119.99864 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46932 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47323 * 119.99846 * 9 7 5 12 12 H 1.48501 * 109.47050 * 240.00243 * 9 7 5 13 13 N 1.46896 * 109.46963 * 300.76304 * 3 2 1 14 14 C 1.46955 * 111.00181 * 180.78543 * 13 3 2 15 15 C 1.53054 * 109.36573 * 183.18979 * 14 13 3 16 16 N 1.46960 * 109.36254 * 301.59521 * 15 14 13 17 17 C 1.46896 * 110.99902 * 183.18950 * 16 15 14 18 18 H 1.08998 * 110.76385 * 297.65698 * 17 16 15 19 19 C 1.55401 * 110.84850 * 60.91652 * 17 16 15 20 20 C 1.54906 * 101.74193 * 153.85882 * 19 17 16 21 21 N 1.47837 * 104.79995 * 323.02184 * 20 19 17 22 22 C 1.47445 * 108.56538 * 24.09119 * 21 20 19 23 23 C 1.46955 * 110.87785 * 59.32189 * 16 15 14 24 24 C 1.46960 * 110.99902 * 304.58227 * 13 3 2 25 25 H 1.09002 * 109.47052 * 294.51004 * 1 2 3 26 26 H 1.09002 * 109.47027 * 54.50702 * 1 2 3 27 27 H 1.09001 * 109.46913 * 174.50786 * 1 2 3 28 28 H 1.08995 * 109.47507 * 239.99292 * 2 1 3 29 29 H 1.09005 * 109.46752 * 119.99579 * 2 1 3 30 30 H 0.96992 * 120.00684 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.49280 * 63.21710 * 14 13 3 32 32 H 1.09010 * 109.50420 * 303.16148 * 14 13 3 33 33 H 1.08997 * 109.48599 * 181.63113 * 15 14 13 34 34 H 1.09000 * 109.50722 * 61.57491 * 15 14 13 35 35 H 1.09003 * 110.86942 * 35.77351 * 19 17 16 36 36 H 1.08996 * 111.06041 * 272.03553 * 19 17 16 37 37 H 1.09000 * 110.37173 * 204.19041 * 20 19 17 38 38 H 1.08998 * 110.36873 * 81.85197 * 20 19 17 39 39 H 1.00892 * 111.00169 * 146.36051 * 21 20 19 40 40 H 1.09004 * 109.88493 * 118.41853 * 22 21 20 41 41 H 1.09001 * 109.89385 * 239.44244 * 22 21 20 42 42 H 1.08999 * 109.49280 * 60.64891 * 23 16 15 43 43 H 1.09004 * 109.48737 * 180.71102 * 23 16 15 44 44 H 1.09000 * 109.48903 * 296.77594 * 24 13 3 45 45 H 1.08999 * 109.48563 * 56.82475 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4424 -0.0137 5 6 1.5532 2.1475 1.2398 6 1 0.9312 3.0260 1.1524 7 6 1.9020 1.6709 2.4857 8 7 2.6599 0.6014 2.5922 9 14 1.2979 2.5443 4.0225 10 1 0.4681 3.7128 3.6339 11 1 0.4834 1.6070 4.8368 12 1 2.4627 3.0079 4.8185 13 7 1.5354 2.1402 -1.1901 14 6 2.0214 3.5264 -1.2335 15 6 1.4111 4.2406 -2.4419 16 7 1.7753 3.5192 -3.6693 17 6 1.2707 4.2169 -4.8594 18 1 0.1818 4.2639 -4.8471 19 6 1.8801 5.6426 -4.9646 20 6 1.8084 5.9043 -6.4897 21 7 2.1056 4.5965 -7.1117 22 6 1.7730 3.5317 -6.1476 23 6 1.2894 2.1330 -3.6259 24 6 1.8997 1.4188 -2.4175 25 1 -0.3633 0.4263 0.9351 26 1 -0.3633 0.5967 -0.8367 27 1 -0.3633 -1.0230 -0.0984 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.9050 0.2659 3.4686 31 1 3.1079 3.5284 -1.3204 32 1 1.7287 4.0435 -0.3196 33 1 1.7927 5.2603 -2.4925 34 1 0.3259 4.2629 -2.3416 35 1 2.9127 5.6503 -4.6153 36 1 1.2790 6.3671 -4.4153 37 1 2.5545 6.6426 -6.7835 38 1 0.8101 6.2400 -6.7705 39 1 1.5906 4.4796 -7.9714 40 1 0.9907 2.8923 -6.5567 41 1 2.6608 2.9380 -5.9298 42 1 0.2029 2.1310 -3.5390 43 1 1.5823 1.6162 -4.5398 44 1 2.9848 1.3969 -2.5180 45 1 1.5183 0.3990 -2.3667 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393885362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:27 Heat of formation + Delta-G solvation = 17.766030 kcal Electronic energy + Delta-G solvation = -21795.739352 eV Core-core repulsion = 18847.931910 eV Total energy + Delta-G solvation = -2947.807441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.51596 -37.77842 -35.32729 -32.65537 -31.15234 -30.58230 -29.29669 -28.52337 -26.43169 -24.61747 -23.34398 -22.60649 -20.99355 -20.44342 -19.67762 -18.73513 -16.86387 -16.54721 -16.06984 -15.03908 -14.44012 -14.31410 -14.13964 -14.09845 -13.61078 -13.50302 -13.17477 -12.78806 -12.60782 -12.25313 -12.01796 -11.86073 -11.73453 -11.38051 -11.20763 -10.97156 -10.91600 -10.84578 -10.71496 -10.47966 -10.33358 -10.11004 -9.86314 -9.60460 -9.35245 -8.77195 -8.61689 -8.38497 -8.11050 -7.10756 -5.98749 -4.02108 3.29855 3.38236 3.41833 3.92659 4.18937 4.41900 4.48962 4.74472 4.96294 5.05211 5.15929 5.27608 5.33658 5.43319 5.49158 5.58163 5.67798 5.73343 5.84533 5.88359 5.93806 5.97983 6.10133 6.12512 6.24754 6.45223 6.51981 6.59937 6.65769 6.68162 6.74599 6.80306 7.11735 7.15547 7.25643 7.31344 7.39407 7.44507 7.66604 7.77253 7.85672 8.22009 8.36541 8.62882 9.03413 9.61873 11.07772 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.032786 B = 0.004570 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.816139 B = 6125.534790 C = 6664.464313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.112 4.112 3 C 0.217 3.783 4 H -0.002 1.002 5 C -0.494 4.494 6 H 0.061 0.939 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.530 5.530 14 C 0.068 3.932 15 C 0.059 3.941 16 N -0.526 5.526 17 C 0.062 3.938 18 H 0.043 0.957 19 C -0.122 4.122 20 C 0.046 3.954 21 N -0.683 5.683 22 C 0.054 3.946 23 C 0.060 3.940 24 C 0.054 3.946 25 H 0.054 0.946 26 H 0.045 0.955 27 H 0.014 0.986 28 H 0.014 0.986 29 H 0.091 0.909 30 H 0.259 0.741 31 H 0.028 0.972 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.035 0.965 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.040 0.960 39 H 0.336 0.664 40 H 0.047 0.953 41 H 0.087 0.913 42 H 0.036 0.964 43 H 0.068 0.932 44 H 0.028 0.972 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.156 6.360 -15.121 16.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.151 4.151 3 C 0.111 3.889 4 H 0.015 0.985 5 C -0.533 4.533 6 H 0.079 0.921 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.256 5.256 14 C -0.061 4.061 15 C -0.069 4.069 16 N -0.251 5.251 17 C -0.048 4.048 18 H 0.061 0.939 19 C -0.160 4.160 20 C -0.083 4.083 21 N -0.312 5.312 22 C -0.075 4.075 23 C -0.068 4.068 24 C -0.075 4.075 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.033 0.967 28 H 0.033 0.967 29 H 0.110 0.890 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.058 0.942 39 H 0.151 0.849 40 H 0.065 0.935 41 H 0.105 0.895 42 H 0.054 0.946 43 H 0.087 0.913 44 H 0.046 0.954 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.373 6.245 -14.825 16.261 hybrid contribution -1.318 0.361 0.876 1.623 sum -3.691 6.606 -13.949 15.870 Atomic orbital electron populations 1.21459 0.97360 0.97177 1.01761 1.21589 0.95103 0.98276 1.00099 1.19247 0.92720 0.90794 0.86126 0.98488 1.21080 1.30794 1.11798 0.89615 0.92065 1.24895 0.95246 0.95100 0.98875 1.69882 1.36877 1.22849 1.23584 0.86539 0.78490 0.79676 0.83297 1.19811 1.21122 1.21213 1.62270 1.59742 1.01326 1.02240 1.21973 0.96708 0.90923 0.96482 1.22242 0.98387 0.96957 0.89293 1.62264 1.59079 1.02355 1.01451 1.22871 0.96330 0.94239 0.91318 0.93943 1.22806 1.02684 0.95286 0.95201 1.22798 0.99273 0.92129 0.94100 1.61867 1.60832 1.01993 1.06489 1.22652 1.00352 0.93812 0.90702 1.22188 0.97600 0.88506 0.98511 1.22123 0.97611 0.97824 0.89957 0.92721 0.93639 0.96684 0.96735 0.89027 0.93104 0.95416 0.89485 0.91227 0.94630 0.89526 0.91104 0.90292 0.94200 0.84881 0.93491 0.89452 0.94608 0.91314 0.95366 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 9.44 37.16 0.35 -2.28 16 2 C -0.11 -2.66 4.97 -26.73 -0.13 -2.80 16 3 C 0.22 5.35 1.76 -68.87 -0.12 5.23 16 4 H 0.00 -0.07 8.14 -51.93 -0.42 -0.49 16 5 C -0.49 -13.10 6.77 -34.44 -0.23 -13.33 16 6 H 0.06 1.64 6.74 -52.49 -0.35 1.28 16 7 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 8 N -0.89 -25.10 11.31 55.43 0.63 -24.47 16 9 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.53 -11.15 3.68 -227.87 -0.84 -11.99 16 14 C 0.07 1.33 5.38 -3.77 -0.02 1.31 16 15 C 0.06 0.94 5.43 -3.76 -0.02 0.92 16 16 N -0.53 -7.87 4.53 -224.14 -1.02 -8.88 16 17 C 0.06 0.77 2.65 -65.75 -0.17 0.60 16 18 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 19 C -0.12 -1.34 5.41 -24.45 -0.13 -1.47 16 20 C 0.05 0.44 7.58 -2.30 -0.02 0.42 16 21 N -0.68 -7.06 7.39 -110.80 -0.82 -7.88 16 22 C 0.05 0.61 6.11 -2.84 -0.02 0.60 16 23 C 0.06 0.92 5.41 -3.77 -0.02 0.90 16 24 C 0.05 0.99 5.15 -3.76 -0.02 0.97 16 25 H 0.05 1.29 7.44 -51.93 -0.39 0.91 16 26 H 0.04 0.96 7.36 -51.93 -0.38 0.58 16 27 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.01 0.31 6.31 -51.93 -0.33 -0.02 16 29 H 0.09 2.43 6.05 -51.93 -0.31 2.12 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 1.81 6.42 -51.92 -0.33 1.48 16 33 H 0.07 1.00 7.00 -51.93 -0.36 0.63 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.07 0.72 8.02 -51.93 -0.42 0.30 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.34 2.79 8.91 -39.30 -0.35 2.44 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.09 1.13 7.69 -51.93 -0.40 0.73 16 42 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.93 6.90 -51.93 -0.36 0.57 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.08 1.43 6.03 -51.93 -0.31 1.12 16 LS Contribution 331.89 15.07 5.00 5.00 Total: -1.00 -27.69 331.89 -10.80 -38.49 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -8.08 Total: 1.06 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -0.65 Total: -7.41 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -2.05 Total: -53.22 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.69 -10.80 -38.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393885362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.261 kcal (2) G-P(sol) polarization free energy of solvation -27.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds