Wall clock time and date at job start Mon Mar 30 2020 05:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47365 * 2 1 4 4 H 1.09004 * 109.47138 * 180.76293 * 3 2 1 5 5 C 1.50703 * 109.47243 * 60.75940 * 3 2 1 6 6 H 1.07994 * 120.00432 * 240.00049 * 5 3 2 7 7 C 1.37877 * 119.99535 * 60.00374 * 5 3 2 8 8 N 1.31513 * 120.00630 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 119.99864 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46932 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47323 * 119.99846 * 9 7 5 12 12 H 1.48501 * 109.47050 * 240.00243 * 9 7 5 13 13 N 1.46896 * 109.46963 * 300.76304 * 3 2 1 14 14 C 1.46955 * 111.00181 * 180.78543 * 13 3 2 15 15 C 1.53054 * 109.36573 * 183.18979 * 14 13 3 16 16 N 1.46960 * 109.36254 * 301.59521 * 15 14 13 17 17 C 1.46896 * 110.99902 * 183.18950 * 16 15 14 18 18 H 1.08998 * 110.76385 * 297.65698 * 17 16 15 19 19 C 1.55401 * 110.84850 * 60.91652 * 17 16 15 20 20 C 1.54906 * 101.74193 * 153.85882 * 19 17 16 21 21 N 1.47837 * 104.79995 * 323.02184 * 20 19 17 22 22 C 1.47445 * 108.56538 * 24.09119 * 21 20 19 23 23 C 1.46955 * 110.87785 * 59.32189 * 16 15 14 24 24 C 1.46960 * 110.99902 * 304.58227 * 13 3 2 25 25 H 1.09002 * 109.47052 * 294.51004 * 1 2 3 26 26 H 1.09002 * 109.47027 * 54.50702 * 1 2 3 27 27 H 1.09001 * 109.46913 * 174.50786 * 1 2 3 28 28 H 1.08995 * 109.47507 * 239.99292 * 2 1 3 29 29 H 1.09005 * 109.46752 * 119.99579 * 2 1 3 30 30 H 0.96992 * 120.00684 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.49280 * 63.21710 * 14 13 3 32 32 H 1.09010 * 109.50420 * 303.16148 * 14 13 3 33 33 H 1.08997 * 109.48599 * 181.63113 * 15 14 13 34 34 H 1.09000 * 109.50722 * 61.57491 * 15 14 13 35 35 H 1.09003 * 110.86942 * 35.77351 * 19 17 16 36 36 H 1.08996 * 111.06041 * 272.03553 * 19 17 16 37 37 H 1.09000 * 110.37173 * 204.19041 * 20 19 17 38 38 H 1.08998 * 110.36873 * 81.85197 * 20 19 17 39 39 H 1.00892 * 111.00169 * 146.36051 * 21 20 19 40 40 H 1.09004 * 109.88493 * 118.41853 * 22 21 20 41 41 H 1.09001 * 109.89385 * 239.44244 * 22 21 20 42 42 H 1.08999 * 109.49280 * 60.64891 * 23 16 15 43 43 H 1.09004 * 109.48737 * 180.71102 * 23 16 15 44 44 H 1.09000 * 109.48903 * 296.77594 * 24 13 3 45 45 H 1.08999 * 109.48563 * 56.82475 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4424 -0.0137 5 6 1.5532 2.1475 1.2398 6 1 0.9312 3.0260 1.1524 7 6 1.9020 1.6709 2.4857 8 7 2.6599 0.6014 2.5922 9 14 1.2979 2.5443 4.0225 10 1 0.4681 3.7128 3.6339 11 1 0.4834 1.6070 4.8368 12 1 2.4627 3.0079 4.8185 13 7 1.5354 2.1402 -1.1901 14 6 2.0214 3.5264 -1.2335 15 6 1.4111 4.2406 -2.4419 16 7 1.7753 3.5192 -3.6693 17 6 1.2707 4.2169 -4.8594 18 1 0.1818 4.2639 -4.8471 19 6 1.8801 5.6426 -4.9646 20 6 1.8084 5.9043 -6.4897 21 7 2.1056 4.5965 -7.1117 22 6 1.7730 3.5317 -6.1476 23 6 1.2894 2.1330 -3.6259 24 6 1.8997 1.4188 -2.4175 25 1 -0.3633 0.4263 0.9351 26 1 -0.3633 0.5967 -0.8367 27 1 -0.3633 -1.0230 -0.0984 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.9050 0.2659 3.4686 31 1 3.1079 3.5284 -1.3204 32 1 1.7287 4.0435 -0.3196 33 1 1.7927 5.2603 -2.4925 34 1 0.3259 4.2629 -2.3416 35 1 2.9127 5.6503 -4.6153 36 1 1.2790 6.3671 -4.4153 37 1 2.5545 6.6426 -6.7835 38 1 0.8101 6.2400 -6.7705 39 1 1.5906 4.4796 -7.9714 40 1 0.9907 2.8923 -6.5567 41 1 2.6608 2.9380 -5.9298 42 1 0.2029 2.1310 -3.5390 43 1 1.5823 1.6162 -4.5398 44 1 2.9848 1.3969 -2.5180 45 1 1.5183 0.3990 -2.3667 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393885362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:26 Heat of formation + Delta-G solvation = -2.015540 kcal Electronic energy + Delta-G solvation = -21796.597145 eV Core-core repulsion = 18847.931910 eV Total energy + Delta-G solvation = -2948.665234 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.72344 -39.08422 -36.80857 -34.42803 -32.90537 -31.95849 -30.35761 -29.73168 -28.13147 -26.24000 -24.87224 -24.19759 -21.93212 -21.67438 -21.09683 -20.39333 -18.16419 -17.78540 -17.67037 -16.74131 -15.88631 -15.66533 -15.61801 -15.46502 -15.31658 -14.66419 -14.57679 -14.11988 -13.88472 -13.51682 -13.44941 -13.33834 -13.13251 -12.82604 -12.74494 -12.43073 -12.38716 -12.32081 -12.10297 -12.01730 -11.83417 -11.71776 -11.55866 -11.41171 -11.09502 -10.73761 -10.43983 -9.43532 -9.26113 -8.89305 -8.07172 -6.17049 1.40651 1.43261 1.53843 2.43587 2.83601 3.20395 3.34620 3.37377 3.58018 3.91750 4.03893 4.13917 4.23103 4.36888 4.38851 4.42859 4.46524 4.50155 4.62318 4.67334 4.71193 4.77830 4.86737 4.87799 4.92669 5.00788 5.03671 5.04928 5.12333 5.15511 5.23544 5.26934 5.44789 5.50342 5.73491 5.77386 5.87443 5.88895 6.06349 6.17160 6.33091 6.44624 6.51115 6.76547 6.95746 7.50711 8.98712 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.032786 B = 0.004570 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.816139 B = 6125.534790 C = 6664.464313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.108 4.108 3 C 0.223 3.777 4 H -0.048 1.048 5 C -0.501 4.501 6 H 0.056 0.944 7 C 0.014 3.986 8 N -0.920 5.920 9 Si 0.952 3.048 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.284 1.284 13 N -0.530 5.530 14 C 0.069 3.931 15 C 0.073 3.927 16 N -0.536 5.536 17 C 0.062 3.938 18 H 0.048 0.952 19 C -0.121 4.121 20 C 0.051 3.949 21 N -0.692 5.692 22 C 0.059 3.941 23 C 0.070 3.930 24 C 0.054 3.946 25 H 0.031 0.969 26 H 0.053 0.947 27 H 0.039 0.961 28 H 0.029 0.971 29 H 0.061 0.939 30 H 0.259 0.741 31 H 0.009 0.991 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.035 0.965 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.057 0.943 39 H 0.349 0.651 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.037 0.963 43 H 0.092 0.908 44 H 0.012 0.988 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.670 7.351 -16.809 18.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.146 4.146 3 C 0.116 3.884 4 H -0.031 1.031 5 C -0.539 4.539 6 H 0.074 0.926 7 C -0.184 4.184 8 N -0.561 5.561 9 Si 0.779 3.221 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.210 1.210 13 N -0.255 5.255 14 C -0.059 4.059 15 C -0.055 4.055 16 N -0.261 5.261 17 C -0.047 4.047 18 H 0.066 0.934 19 C -0.159 4.159 20 C -0.078 4.078 21 N -0.323 5.323 22 C -0.070 4.070 23 C -0.058 4.058 24 C -0.074 4.074 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.027 0.973 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.053 0.947 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.166 0.834 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.056 0.944 43 H 0.110 0.890 44 H 0.030 0.970 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.897 7.249 -16.546 18.479 hybrid contribution -0.787 0.058 1.344 1.559 sum -4.684 7.306 -15.201 17.504 Atomic orbital electron populations 1.21302 0.95574 0.98684 1.00793 1.21458 0.96534 0.97310 0.99326 1.19035 0.89976 0.91915 0.87465 1.03099 1.21264 1.30441 1.11625 0.90606 0.92609 1.25613 0.95435 0.95739 1.01656 1.70018 1.37888 1.24055 1.24115 0.85589 0.77983 0.78772 0.79804 1.19124 1.20783 1.21041 1.62246 1.59248 1.01928 1.02093 1.21945 0.95773 0.90429 0.97803 1.22051 0.97896 0.97328 0.88222 1.62229 1.59625 1.02316 1.01967 1.22942 0.96613 0.94840 0.90346 0.93388 1.22802 1.01694 0.94756 0.96672 1.22804 1.00519 0.91844 0.92676 1.61812 1.61501 1.02059 1.06911 1.22536 0.99903 0.94101 0.90477 1.22086 0.97264 0.88772 0.97671 1.22180 0.96911 0.98238 0.90117 0.94980 0.92805 0.94230 0.95213 0.92046 0.93155 0.97321 0.91271 0.89371 0.94681 0.91221 0.90050 0.89689 0.92438 0.83412 0.91951 0.91328 0.94449 0.88973 0.96981 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.57 9.44 71.98 0.68 -3.89 16 2 C -0.11 -5.19 4.97 30.59 0.15 -5.04 16 3 C 0.22 11.37 1.76 44.17 0.08 11.44 16 4 H -0.05 -2.86 8.14 -2.38 -0.02 -2.87 16 5 C -0.50 -27.20 6.77 25.60 0.17 -27.02 16 6 H 0.06 3.04 6.74 -2.91 -0.02 3.02 16 7 C 0.01 0.76 5.30 84.65 0.45 1.21 16 8 N -0.92 -53.18 11.31 21.45 0.24 -52.93 16 9 Si 0.95 43.76 29.54 68.60 2.03 45.79 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 N -0.53 -22.57 3.68 -874.84 -3.22 -25.79 16 14 C 0.07 2.76 5.38 86.31 0.46 3.22 16 15 C 0.07 2.25 5.43 86.31 0.47 2.72 16 16 N -0.54 -15.19 4.53 -863.05 -3.91 -19.10 16 17 C 0.06 1.37 2.65 46.19 0.12 1.50 16 18 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16 19 C -0.12 -2.38 5.41 32.07 0.17 -2.21 16 20 C 0.05 0.81 7.58 86.77 0.66 1.47 16 21 N -0.69 -12.40 7.39 -504.45 -3.73 -16.13 16 22 C 0.06 1.19 6.11 86.64 0.53 1.72 16 23 C 0.07 2.03 5.41 86.31 0.47 2.49 16 24 C 0.05 1.98 5.15 86.31 0.44 2.42 16 25 H 0.03 1.49 7.44 -2.39 -0.02 1.48 16 26 H 0.05 2.20 7.36 -2.39 -0.02 2.18 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.03 1.30 6.31 -2.39 -0.02 1.29 16 29 H 0.06 3.35 6.05 -2.38 -0.01 3.34 16 30 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 31 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.07 2.96 6.42 -2.38 -0.02 2.95 16 33 H 0.09 2.39 7.00 -2.39 -0.02 2.37 16 34 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.08 1.42 8.02 -2.39 -0.02 1.40 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.35 4.71 8.91 -89.70 -0.80 3.91 16 40 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.65 7.69 -2.39 -0.02 1.63 16 42 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.09 2.26 6.90 -2.39 -0.02 2.25 16 44 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.08 2.85 6.03 -2.39 -0.01 2.83 16 Total: -1.00 -60.62 331.89 -3.58 -64.20 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.15 Total: 13.93 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 4.86 Total: -9.96 kcal Atomic # 7 Polarization: -103.33 SS G_CDS: -10.62 Total: -113.96 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -60.62 -3.58 -64.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393885362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.186 kcal (2) G-P(sol) polarization free energy of solvation -60.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds