Wall clock time and date at job start Mon Mar 30 2020 05:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46846 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47372 * 119.99935 * 9 7 5 12 12 H 1.48500 * 109.47110 * 240.00168 * 9 7 5 13 13 N 1.46898 * 109.47092 * 295.00148 * 3 2 1 14 14 C 1.46949 * 111.00003 * 298.79603 * 13 3 2 15 15 C 1.53059 * 109.36642 * 176.81251 * 14 13 3 16 16 N 1.46956 * 109.36181 * 58.40232 * 15 14 13 17 17 C 1.46898 * 110.99773 * 176.81393 * 16 15 14 18 18 H 1.09001 * 110.27537 * 63.16575 * 17 16 15 19 19 C 1.54590 * 110.31222 * 300.96815 * 17 16 15 20 20 C 1.54929 * 102.92344 * 219.12723 * 19 17 16 21 21 N 1.48532 * 103.22899 * 37.41364 * 20 19 17 22 22 C 1.47904 * 105.81684 * 320.78936 * 21 20 19 23 23 C 1.46958 * 110.88074 * 300.67886 * 16 15 14 24 24 C 1.46965 * 111.00031 * 174.99518 * 13 3 2 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.49209 * 296.77605 * 14 13 3 32 32 H 1.08996 * 109.49243 * 56.84614 * 14 13 3 33 33 H 1.08999 * 109.48324 * 298.43348 * 15 14 13 34 34 H 1.08992 * 109.50562 * 178.37761 * 15 14 13 35 35 H 1.09004 * 110.72168 * 337.48840 * 19 17 16 36 36 H 1.09003 * 110.72538 * 100.76480 * 19 17 16 37 37 H 1.08994 * 110.67043 * 278.97572 * 20 19 17 38 38 H 1.09010 * 110.67002 * 155.84666 * 20 19 17 39 39 H 1.00904 * 111.00218 * 81.30710 * 21 20 19 40 40 H 1.08991 * 109.91817 * 265.97457 * 22 21 20 41 41 H 1.09010 * 110.07506 * 144.77365 * 22 21 20 42 42 H 1.09005 * 109.49011 * 299.35549 * 23 16 15 43 43 H 1.09000 * 109.49091 * 179.29389 * 23 16 15 44 44 H 1.08997 * 109.48762 * 303.15826 * 24 13 3 45 45 H 1.09006 * 109.48391 * 63.22400 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5989 1.5440 0.1931 11 1 6.4001 1.6155 2.6092 12 1 6.4962 -0.5192 1.4627 13 7 1.6514 2.0992 -1.2552 14 6 2.2439 1.4150 -2.4129 15 6 1.7523 2.0793 -3.7013 16 7 2.1220 3.5016 -3.6878 17 6 1.7333 4.1584 -4.9430 18 1 0.6500 4.1356 -5.0615 19 6 2.4212 3.4700 -6.1441 20 6 2.7916 4.6625 -7.0613 21 7 3.1882 5.7216 -6.0984 22 6 2.2430 5.6113 -4.9661 23 6 1.5295 4.1858 -2.5300 24 6 2.0210 3.5215 -1.2417 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0605 2.9503 31 1 3.3304 1.4846 -2.3597 32 1 1.9456 0.3667 -2.4077 33 1 0.6684 1.9858 -3.7678 34 1 2.2129 1.5920 -4.5606 35 1 3.3166 2.9379 -5.8228 36 1 1.7305 2.7949 -6.6493 37 1 1.9292 4.9791 -7.6478 38 1 3.6264 4.4024 -7.7124 39 1 4.1398 5.5913 -5.7891 40 1 1.4074 6.2958 -5.1119 41 1 2.7521 5.8412 -4.0300 42 1 0.4429 4.1163 -2.5833 43 1 1.8277 5.2342 -2.5353 44 1 1.5602 4.0089 -0.3825 45 1 3.1050 3.6149 -1.1752 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393885364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:30 Heat of formation + Delta-G solvation = 15.778563 kcal Electronic energy + Delta-G solvation = -21937.520649 eV Core-core repulsion = 18989.627025 eV Total energy + Delta-G solvation = -2947.893624 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.58430 -37.77259 -35.23517 -32.48975 -31.31230 -30.52615 -29.28164 -28.37157 -26.48711 -24.50625 -23.29500 -22.50524 -21.41527 -20.24426 -19.54450 -18.85249 -16.99190 -16.26542 -15.53649 -15.48795 -14.66055 -14.27863 -14.09320 -13.98096 -13.91826 -13.59815 -13.14565 -12.65605 -12.37228 -12.10436 -11.85465 -11.67546 -11.44979 -11.37210 -11.27226 -11.13703 -10.96271 -10.84312 -10.62728 -10.55447 -10.39540 -10.24767 -9.79229 -9.65410 -9.33870 -9.07839 -8.74387 -8.35742 -8.06201 -7.10707 -5.98108 -4.11177 3.25864 3.34766 3.38759 4.01434 4.21213 4.40441 4.60810 4.90240 5.03970 5.11209 5.24658 5.26226 5.41126 5.48085 5.52135 5.63325 5.74465 5.77545 5.85758 5.90764 5.96123 6.00443 6.05867 6.16038 6.27470 6.39969 6.45112 6.59475 6.64075 6.68564 6.79083 6.88388 7.07438 7.17019 7.20416 7.30029 7.38695 7.40781 7.62228 7.76565 7.98778 8.16407 8.33081 8.47108 8.99369 9.56396 11.00943 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.022079 B = 0.005352 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.888745 B = 5230.416904 C = 5894.926074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C 0.214 3.786 4 H 0.038 0.962 5 C -0.540 4.540 6 H 0.058 0.942 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.535 5.535 14 C 0.063 3.937 15 C 0.059 3.941 16 N -0.529 5.529 17 C 0.053 3.947 18 H 0.043 0.957 19 C -0.150 4.150 20 C 0.043 3.957 21 N -0.674 5.674 22 C 0.047 3.953 23 C 0.057 3.943 24 C 0.065 3.935 25 H 0.045 0.955 26 H 0.039 0.961 27 H 0.025 0.975 28 H 0.092 0.908 29 H 0.032 0.968 30 H 0.260 0.740 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.031 0.969 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.340 0.660 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.033 0.967 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.410 5.819 -13.391 14.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.151 4.151 3 C 0.107 3.893 4 H 0.056 0.944 5 C -0.579 4.579 6 H 0.076 0.924 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.714 3.286 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.260 5.260 14 C -0.066 4.066 15 C -0.069 4.069 16 N -0.254 5.254 17 C -0.057 4.057 18 H 0.061 0.939 19 C -0.190 4.190 20 C -0.086 4.086 21 N -0.301 5.301 22 C -0.083 4.083 23 C -0.071 4.071 24 C -0.064 4.064 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.044 0.956 28 H 0.111 0.889 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.050 0.950 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.155 0.845 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.051 0.949 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.720 6.319 -13.544 15.401 hybrid contribution 1.303 -0.989 0.703 1.780 sum -2.417 5.330 -12.841 14.112 Atomic orbital electron populations 1.21705 0.98904 0.98365 1.00507 1.21623 0.92193 0.99275 1.01970 1.19263 0.93143 0.91079 0.85765 0.94445 1.21779 0.92841 1.37810 1.05429 0.92406 1.24906 0.97758 0.95075 0.95702 1.69884 1.34667 1.38521 1.09430 0.86636 0.86319 0.77672 0.77965 1.19928 1.21058 1.21061 1.62640 1.57753 1.01222 1.04379 1.21969 0.98304 0.97476 0.88861 1.22239 0.98038 0.87763 0.98852 1.62327 1.59060 1.02809 1.01214 1.22922 0.97455 0.94926 0.90390 0.93869 1.23193 1.01506 0.98691 0.95593 1.23063 1.00915 0.89393 0.95271 1.62750 1.06734 1.47539 1.13045 1.22827 0.96684 0.94383 0.94416 1.22259 0.96677 0.97402 0.90744 1.21891 0.99494 0.90345 0.94634 0.93560 0.94206 0.95628 0.88931 0.94889 0.93001 0.93576 0.90934 0.95042 0.91505 0.90175 0.91279 0.90518 0.90822 0.84488 0.90920 0.90277 0.94879 0.91244 0.91535 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.80 37.16 0.36 -2.42 16 2 C -0.11 -2.62 5.07 -26.74 -0.14 -2.76 16 3 C 0.21 5.18 1.75 -68.87 -0.12 5.06 16 4 H 0.04 1.02 8.11 -51.93 -0.42 0.60 16 5 C -0.54 -14.24 7.13 -34.44 -0.25 -14.48 16 6 H 0.06 1.57 5.80 -52.49 -0.30 1.26 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.89 -24.72 11.29 55.43 0.63 -24.10 16 9 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.54 -11.11 4.15 -227.88 -0.95 -12.05 16 14 C 0.06 1.21 4.96 -3.77 -0.02 1.19 16 15 C 0.06 0.94 5.38 -3.76 -0.02 0.92 16 16 N -0.53 -7.97 4.49 -224.87 -1.01 -8.98 16 17 C 0.05 0.67 2.72 -66.36 -0.18 0.48 16 18 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 19 C -0.15 -1.64 5.45 -24.88 -0.14 -1.78 16 20 C 0.04 0.42 7.55 -1.90 -0.01 0.41 16 21 N -0.67 -7.42 7.51 -110.09 -0.83 -8.24 16 22 C 0.05 0.55 6.69 -2.75 -0.02 0.53 16 23 C 0.06 0.90 5.35 -3.77 -0.02 0.88 16 24 C 0.07 1.25 5.32 -3.76 -0.02 1.23 16 25 H 0.05 0.90 7.75 -51.93 -0.40 0.50 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 29 H 0.03 0.75 6.11 -51.93 -0.32 0.44 16 30 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.05 1.00 6.51 -51.93 -0.34 0.67 16 32 H 0.07 1.43 6.07 -51.93 -0.32 1.11 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.97 6.74 -51.93 -0.35 0.62 16 35 H 0.08 0.97 7.62 -51.93 -0.40 0.58 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 39 H 0.34 3.61 8.92 -39.29 -0.35 3.26 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.98 6.43 -51.92 -0.33 0.65 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.97 6.31 -51.93 -0.33 0.64 16 44 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 45 H 0.05 0.99 6.89 -51.93 -0.36 0.63 16 LS Contribution 329.69 15.07 4.97 4.97 Total: -1.00 -27.01 329.69 -10.75 -37.76 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -7.89 Total: 3.57 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -0.66 Total: -9.00 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -2.16 Total: -53.38 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.01 -10.75 -37.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393885364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.542 kcal (2) G-P(sol) polarization free energy of solvation -27.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds