Wall clock time and date at job start Mon Mar 30 2020 05:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46846 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47372 * 119.99935 * 9 7 5 12 12 H 1.48500 * 109.47110 * 240.00168 * 9 7 5 13 13 N 1.46898 * 109.47092 * 295.00148 * 3 2 1 14 14 C 1.46949 * 111.00003 * 298.79603 * 13 3 2 15 15 C 1.53059 * 109.36642 * 176.81251 * 14 13 3 16 16 N 1.46956 * 109.36181 * 58.40232 * 15 14 13 17 17 C 1.46898 * 110.99773 * 176.81393 * 16 15 14 18 18 H 1.09001 * 110.27537 * 63.16575 * 17 16 15 19 19 C 1.54590 * 110.31222 * 300.96815 * 17 16 15 20 20 C 1.54929 * 102.92344 * 219.12723 * 19 17 16 21 21 N 1.48532 * 103.22899 * 37.41364 * 20 19 17 22 22 C 1.47904 * 105.81684 * 320.78936 * 21 20 19 23 23 C 1.46958 * 110.88074 * 300.67886 * 16 15 14 24 24 C 1.46965 * 111.00031 * 174.99518 * 13 3 2 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.49209 * 296.77605 * 14 13 3 32 32 H 1.08996 * 109.49243 * 56.84614 * 14 13 3 33 33 H 1.08999 * 109.48324 * 298.43348 * 15 14 13 34 34 H 1.08992 * 109.50562 * 178.37761 * 15 14 13 35 35 H 1.09004 * 110.72168 * 337.48840 * 19 17 16 36 36 H 1.09003 * 110.72538 * 100.76480 * 19 17 16 37 37 H 1.08994 * 110.67043 * 278.97572 * 20 19 17 38 38 H 1.09010 * 110.67002 * 155.84666 * 20 19 17 39 39 H 1.00904 * 111.00218 * 81.30710 * 21 20 19 40 40 H 1.08991 * 109.91817 * 265.97457 * 22 21 20 41 41 H 1.09010 * 110.07506 * 144.77365 * 22 21 20 42 42 H 1.09005 * 109.49011 * 299.35549 * 23 16 15 43 43 H 1.09000 * 109.49091 * 179.29389 * 23 16 15 44 44 H 1.08997 * 109.48762 * 303.15826 * 24 13 3 45 45 H 1.09006 * 109.48391 * 63.22400 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5989 1.5440 0.1931 11 1 6.4001 1.6155 2.6092 12 1 6.4962 -0.5192 1.4627 13 7 1.6514 2.0992 -1.2552 14 6 2.2439 1.4150 -2.4129 15 6 1.7523 2.0793 -3.7013 16 7 2.1220 3.5016 -3.6878 17 6 1.7333 4.1584 -4.9430 18 1 0.6500 4.1356 -5.0615 19 6 2.4212 3.4700 -6.1441 20 6 2.7916 4.6625 -7.0613 21 7 3.1882 5.7216 -6.0984 22 6 2.2430 5.6113 -4.9661 23 6 1.5295 4.1858 -2.5300 24 6 2.0210 3.5215 -1.2417 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0605 2.9503 31 1 3.3304 1.4846 -2.3597 32 1 1.9456 0.3667 -2.4077 33 1 0.6684 1.9858 -3.7678 34 1 2.2129 1.5920 -4.5606 35 1 3.3166 2.9379 -5.8228 36 1 1.7305 2.7949 -6.6493 37 1 1.9292 4.9791 -7.6478 38 1 3.6264 4.4024 -7.7124 39 1 4.1398 5.5913 -5.7891 40 1 1.4074 6.2958 -5.1119 41 1 2.7521 5.8412 -4.0300 42 1 0.4429 4.1163 -2.5833 43 1 1.8277 5.2342 -2.5353 44 1 1.5602 4.0089 -0.3825 45 1 3.1050 3.6149 -1.1752 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393885364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:30 Heat of formation + Delta-G solvation = -3.662362 kcal Electronic energy + Delta-G solvation = -21938.363671 eV Core-core repulsion = 18989.627025 eV Total energy + Delta-G solvation = -2948.736646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.79274 -39.12322 -36.70268 -34.31032 -33.04349 -31.91474 -30.34275 -29.58344 -28.16894 -26.10029 -24.73931 -24.16113 -22.38510 -21.58465 -20.89928 -20.51545 -18.39422 -17.85679 -17.06649 -16.51327 -16.29111 -15.79570 -15.49291 -15.39588 -15.14966 -14.90568 -14.76770 -14.25119 -13.82624 -13.47792 -13.28479 -13.13441 -12.91685 -12.76816 -12.66503 -12.48798 -12.37422 -12.32344 -12.12913 -12.01227 -11.83914 -11.72722 -11.58517 -11.42555 -11.09213 -10.94320 -10.42892 -9.61740 -9.25777 -8.92077 -8.03308 -6.25363 1.34175 1.37732 1.47257 2.39439 2.87578 3.14766 3.34482 3.42292 3.67999 4.01829 4.05912 4.23904 4.27267 4.37739 4.39956 4.52131 4.52960 4.58464 4.63385 4.66902 4.73118 4.77313 4.87483 4.89103 4.95104 4.98303 5.04766 5.11041 5.15409 5.18527 5.25415 5.29323 5.40839 5.48654 5.62740 5.78501 5.79488 6.02447 6.10124 6.17351 6.23095 6.39888 6.44349 6.65824 6.95567 7.45197 8.91592 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.022079 B = 0.005352 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.888745 B = 5230.416904 C = 5894.926074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.107 4.107 3 C 0.220 3.780 4 H 0.003 0.997 5 C -0.545 4.545 6 H 0.046 0.954 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 0.944 3.056 10 H -0.275 1.275 11 H -0.281 1.281 12 H -0.280 1.280 13 N -0.531 5.531 14 C 0.067 3.933 15 C 0.071 3.929 16 N -0.538 5.538 17 C 0.054 3.946 18 H 0.047 0.953 19 C -0.146 4.146 20 C 0.048 3.952 21 N -0.679 5.679 22 C 0.051 3.949 23 C 0.069 3.931 24 C 0.066 3.934 25 H 0.054 0.946 26 H 0.032 0.968 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.033 0.967 30 H 0.261 0.739 31 H 0.017 0.983 32 H 0.068 0.932 33 H 0.035 0.965 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.341 0.659 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.037 0.963 43 H 0.089 0.911 44 H 0.060 0.940 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.714 6.303 -15.462 17.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.145 4.145 3 C 0.113 3.887 4 H 0.021 0.979 5 C -0.584 4.584 6 H 0.064 0.936 7 C -0.177 4.177 8 N -0.550 5.550 9 Si 0.771 3.229 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.205 1.205 13 N -0.255 5.255 14 C -0.061 4.061 15 C -0.057 4.057 16 N -0.264 5.264 17 C -0.056 4.056 18 H 0.064 0.936 19 C -0.185 4.185 20 C -0.082 4.082 21 N -0.306 5.306 22 C -0.079 4.079 23 C -0.059 4.059 24 C -0.063 4.063 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.035 0.965 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.156 0.844 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.055 0.945 43 H 0.107 0.893 44 H 0.079 0.921 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -4.025 6.812 -15.634 17.522 hybrid contribution 1.403 -1.112 1.332 2.231 sum -2.623 5.700 -14.302 15.618 Atomic orbital electron populations 1.21556 0.96277 0.99799 1.00552 1.21460 0.94486 0.98138 1.00429 1.19035 0.91791 0.91539 0.86381 0.97938 1.21948 0.94064 1.37369 1.05069 0.93603 1.25567 1.01559 0.94998 0.95574 1.70001 1.36076 1.39137 1.09799 0.85725 0.81761 0.77706 0.77727 1.20013 1.20696 1.20536 1.62601 1.57486 1.01941 1.03468 1.21938 0.96472 0.97694 0.90017 1.22087 0.98163 0.88283 0.97196 1.62300 1.59386 1.02477 1.02236 1.23003 0.97802 0.95409 0.89369 0.93551 1.23161 1.01017 0.99184 0.95158 1.23111 1.01825 0.88312 0.94921 1.62777 1.06738 1.48136 1.12954 1.22782 0.96937 0.93899 0.94316 1.22106 0.96662 0.97975 0.89119 1.21902 0.97780 0.89724 0.96856 0.92648 0.94902 0.93489 0.91934 0.94823 0.92959 0.96465 0.91377 0.94635 0.89633 0.91427 0.90079 0.89674 0.89395 0.84377 0.90148 0.91268 0.94481 0.89275 0.92121 0.96353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.96 9.80 71.98 0.71 -4.25 16 2 C -0.11 -5.06 5.07 30.59 0.15 -4.91 16 3 C 0.22 10.97 1.75 44.17 0.08 11.05 16 4 H 0.00 0.15 8.11 -2.39 -0.02 0.13 16 5 C -0.55 -29.64 7.13 25.60 0.18 -29.46 16 6 H 0.05 2.56 5.80 -2.91 -0.02 2.55 16 7 C 0.02 1.25 5.29 84.65 0.45 1.70 16 8 N -0.91 -51.98 11.29 21.45 0.24 -51.73 16 9 Si 0.94 44.00 29.54 68.60 2.03 46.03 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 N -0.53 -22.28 4.15 -874.87 -3.63 -25.91 16 14 C 0.07 2.61 4.96 86.31 0.43 3.03 16 15 C 0.07 2.13 5.38 86.31 0.46 2.60 16 16 N -0.54 -15.37 4.49 -865.34 -3.89 -19.25 16 17 C 0.05 1.21 2.72 45.79 0.12 1.33 16 18 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 19 C -0.15 -2.78 5.45 31.79 0.17 -2.61 16 20 C 0.05 0.79 7.55 86.65 0.65 1.44 16 21 N -0.68 -13.31 7.51 -502.20 -3.77 -17.09 16 22 C 0.05 1.07 6.69 86.45 0.58 1.65 16 23 C 0.07 2.09 5.35 86.31 0.46 2.55 16 24 C 0.07 2.58 5.32 86.31 0.46 3.04 16 25 H 0.05 2.09 7.75 -2.39 -0.02 2.07 16 26 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.06 3.37 5.95 -2.39 -0.01 3.35 16 29 H 0.03 1.55 6.11 -2.39 -0.01 1.54 16 30 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 31 H 0.02 0.76 6.51 -2.39 -0.02 0.75 16 32 H 0.07 2.66 6.07 -2.39 -0.01 2.65 16 33 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.09 2.28 6.74 -2.39 -0.02 2.26 16 35 H 0.07 1.49 7.62 -2.38 -0.02 1.47 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.09 1.21 8.14 -2.38 -0.02 1.20 16 39 H 0.34 6.57 8.92 -89.69 -0.80 5.77 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.07 1.59 6.43 -2.38 -0.02 1.58 16 42 H 0.04 1.10 8.14 -2.38 -0.02 1.09 16 43 H 0.09 2.35 6.31 -2.39 -0.02 2.33 16 44 H 0.06 2.38 8.12 -2.39 -0.02 2.37 16 45 H 0.02 0.81 6.89 -2.38 -0.02 0.79 16 Total: -1.00 -58.62 329.69 -3.95 -62.57 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.16 Total: 18.22 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: 4.91 Total: -12.84 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -11.05 Total: -113.98 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -58.62 -3.95 -62.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393885364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.905 kcal (2) G-P(sol) polarization free energy of solvation -58.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds